Wall clock time and date at job start Mon Mar 30 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47286 * 2 1 4 4 C 1.38399 * 119.84442 * 265.01835 * 3 2 1 5 5 C 1.37917 * 120.15177 * 179.76473 * 4 3 2 6 6 C 1.39667 * 119.84081 * 0.44310 * 5 4 3 7 7 C 1.47735 * 120.14443 * 179.81122 * 6 5 4 8 8 O 1.21593 * 119.99544 * 189.15295 * 7 6 5 9 9 N 1.34770 * 120.00117 * 9.15742 * 7 6 5 10 10 C 1.36874 * 120.00129 * 187.49050 * 9 7 6 11 11 H 1.08004 * 119.99615 * 45.88251 * 10 9 7 12 12 C 1.39044 * 120.00119 * 225.88866 * 10 9 7 13 13 N 1.31364 * 120.00248 * 31.33210 * 12 10 9 14 14 Si 1.86801 * 119.99828 * 211.33416 * 12 10 9 15 15 H 1.48501 * 109.47262 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47043 * 120.00266 * 14 12 10 17 17 H 1.48502 * 109.47100 * 239.99736 * 14 12 10 18 18 C 1.46503 * 120.00092 * 7.48553 * 9 7 6 19 19 C 1.52999 * 109.47315 * 271.58484 * 18 9 7 20 20 C 1.39627 * 119.70502 * 359.53744 * 6 5 4 21 21 C 1.37952 * 119.83957 * 0.25277 * 20 6 5 22 22 C 1.50707 * 119.92300 * 180.02562 * 21 20 6 23 23 C 1.53000 * 109.47006 * 265.00151 * 22 21 20 24 24 H 1.08999 * 109.46744 * 60.00450 * 1 2 3 25 25 H 1.08993 * 109.47278 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47152 * 300.00637 * 1 2 3 27 27 H 1.09000 * 109.47152 * 239.99363 * 2 1 3 28 28 H 1.09007 * 109.46674 * 119.99811 * 2 1 3 29 29 H 1.07998 * 119.92747 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.07813 * 180.23678 * 5 4 3 31 31 H 0.96992 * 120.00524 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.47141 * 151.58285 * 18 9 7 33 33 H 1.09001 * 109.47104 * 31.58395 * 18 9 7 34 34 H 1.09003 * 109.46894 * 314.60662 * 19 18 9 35 35 H 1.08994 * 109.47358 * 74.60884 * 19 18 9 36 36 H 1.08998 * 109.47255 * 194.61231 * 19 18 9 37 37 H 1.07996 * 120.07836 * 180.22760 * 20 6 5 38 38 H 1.09004 * 109.46918 * 24.99467 * 22 21 20 39 39 H 1.09000 * 109.47502 * 144.99493 * 22 21 20 40 40 H 1.08994 * 109.46796 * 299.99299 * 23 22 21 41 41 H 1.09002 * 109.47387 * 59.99885 * 23 22 21 42 42 H 1.09004 * 109.47023 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3603 2.0354 -1.1959 5 6 2.8161 3.3370 -1.2037 6 6 2.9552 4.0319 -0.0002 7 6 3.4467 5.4251 -0.0004 8 8 3.7253 5.9716 1.0495 9 7 3.5863 6.0902 -1.1642 10 6 4.1838 7.3216 -1.1813 11 1 5.1033 7.4832 -0.6382 12 6 3.6069 8.3643 -1.8976 13 7 2.3016 8.4255 -2.0325 14 14 4.6880 9.6784 -2.6683 15 1 6.1131 9.3825 -2.3736 16 1 4.4793 9.6914 -4.1385 17 1 4.3309 11.0056 -2.1059 18 6 3.0987 5.4953 -2.4110 19 6 4.1998 4.6308 -3.0284 20 6 2.6221 3.4059 1.2027 21 6 2.1633 2.1049 1.1954 22 6 1.8028 1.4277 2.4925 23 6 2.9996 0.6175 2.9947 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.2551 1.4959 -2.1256 30 1 3.0680 3.8167 -2.1380 31 1 1.8991 9.1530 -2.5318 32 1 2.8244 6.2869 -3.1083 33 1 2.2258 4.8770 -2.2015 34 1 5.1457 5.1717 -2.9992 35 1 4.2938 3.7037 -2.4630 36 1 3.9443 4.4012 -4.0628 37 1 2.7239 3.9388 2.1365 38 1 1.5372 2.1810 3.2342 39 1 0.9551 0.7617 2.3314 40 1 3.2652 -0.1358 2.2531 41 1 3.8473 1.2835 3.1559 42 1 2.7390 0.1280 3.9331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337209483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:41 Heat of formation + Delta-G solvation = 14.877325 kcal Electronic energy + Delta-G solvation = -21795.714976 eV Core-core repulsion = 18741.886337 eV Total energy + Delta-G solvation = -3053.828639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.59157 -39.70567 -37.38007 -35.77350 -34.27331 -34.06511 -31.96916 -30.65024 -29.82480 -27.23829 -25.35083 -24.59523 -23.98189 -22.41951 -22.15070 -20.72659 -18.87635 -17.66528 -17.58389 -17.03767 -16.72138 -15.92351 -15.63268 -15.50420 -15.13380 -14.71322 -14.63582 -14.43629 -14.15185 -13.87288 -13.71967 -13.53029 -13.26446 -12.99612 -12.91790 -12.77091 -12.64408 -12.40773 -12.15702 -12.10531 -12.02188 -11.91897 -11.80858 -11.49562 -11.05331 -10.86590 -10.37386 -9.71682 -9.46827 -9.35631 -8.45668 -6.14932 0.07242 0.49765 1.35041 1.39600 1.55225 2.12105 2.27382 2.76329 3.01207 3.09908 3.79988 3.88261 3.96282 4.00464 4.11544 4.19300 4.34808 4.39037 4.50072 4.58466 4.61040 4.64970 4.67966 4.69490 4.82424 4.89100 4.96000 5.05416 5.10665 5.11444 5.14032 5.19599 5.30489 5.36256 5.42028 5.44253 5.52413 5.55006 5.62076 5.75404 6.12647 6.19442 6.53499 7.14272 7.34350 8.03693 8.58465 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029298 B = 0.004778 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.454823 B = 5859.329660 C = 6333.240629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.067 4.067 4 C -0.124 4.124 5 C -0.177 4.177 6 C -0.142 4.142 7 C 0.474 3.526 8 O -0.636 6.636 9 N -0.438 5.438 10 C -0.363 4.363 11 H 0.059 0.941 12 C 0.018 3.982 13 N -0.874 5.874 14 Si 0.979 3.021 15 H -0.266 1.266 16 H -0.256 1.256 17 H -0.280 1.280 18 C 0.086 3.914 19 C -0.190 4.190 20 C -0.092 4.092 21 C -0.093 4.093 22 C -0.084 4.084 23 C -0.143 4.143 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.213 0.787 31 H 0.277 0.723 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.036 0.964 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 -19.105 -2.608 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.068 4.068 4 C -0.141 4.141 5 C -0.193 4.193 6 C -0.145 4.145 7 C 0.267 3.733 8 O -0.525 6.525 9 N -0.155 5.155 10 C -0.490 4.490 11 H 0.077 0.923 12 C -0.188 4.188 13 N -0.509 5.509 14 Si 0.801 3.199 15 H -0.190 1.190 16 H -0.181 1.181 17 H -0.206 1.206 18 C -0.037 4.037 19 C -0.247 4.247 20 C -0.112 4.112 21 C -0.093 4.093 22 C -0.121 4.121 23 C -0.200 4.200 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.177 0.823 30 H 0.228 0.772 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.138 -18.695 -2.227 19.087 hybrid contribution 0.447 1.688 0.248 1.764 sum -2.691 -17.007 -1.979 17.332 Atomic orbital electron populations 1.21766 0.94093 1.02686 1.01857 1.20690 0.96594 0.90436 1.04343 1.20313 0.97053 0.97487 0.91921 1.21416 0.99648 0.94079 0.98986 1.24374 0.97664 0.96237 1.01073 1.20143 1.04746 0.93546 0.96082 1.19350 0.81771 0.87933 0.84289 1.90509 1.57397 1.71669 1.32919 1.43584 1.51150 1.16029 1.04690 1.19240 1.05788 0.88400 1.35562 0.92340 1.26314 0.96046 0.99207 0.97262 1.70210 1.11046 1.33255 1.36352 0.85159 0.79013 0.76953 0.78801 1.18962 1.18052 1.20565 1.22223 0.97184 0.97332 0.86954 1.22684 0.99091 1.00354 1.02529 1.21090 0.98263 0.95307 0.96512 1.19875 1.00052 0.92551 0.96832 1.20633 0.99824 0.99282 0.92382 1.21746 0.96823 0.99607 1.01860 0.92985 0.90330 0.93184 0.89236 0.89581 0.82340 0.77199 0.91382 0.91584 0.89335 0.92614 0.89075 0.87976 0.88264 0.92067 0.88495 0.91457 0.94453 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.72 71.98 0.70 -1.52 16 2 C -0.08 -1.39 5.37 29.85 0.16 -1.23 16 3 C -0.07 -1.71 5.14 -19.80 -0.10 -1.82 16 4 C -0.12 -3.31 9.66 22.23 0.21 -3.10 16 5 C -0.18 -6.19 6.25 22.54 0.14 -6.05 16 6 C -0.14 -6.38 5.76 -20.09 -0.12 -6.50 16 7 C 0.47 26.91 7.55 86.75 0.66 27.57 16 8 O -0.64 -41.80 16.37 -4.01 -0.07 -41.86 16 9 N -0.44 -23.93 2.45 -690.29 -1.69 -25.63 16 10 C -0.36 -21.55 8.63 84.10 0.73 -20.82 16 11 H 0.06 3.72 8.00 -2.91 -0.02 3.70 16 12 C 0.02 0.99 4.58 84.96 0.39 1.38 16 13 N -0.87 -49.62 12.83 21.68 0.28 -49.34 16 14 Si 0.98 42.40 29.65 68.60 2.03 44.44 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 17 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 18 C 0.09 3.69 5.26 86.38 0.45 4.15 16 19 C -0.19 -6.20 9.16 71.98 0.66 -5.54 16 20 C -0.09 -3.78 9.22 22.54 0.21 -3.57 16 21 C -0.09 -2.83 5.13 -19.90 -0.10 -2.93 16 22 C -0.08 -1.95 5.38 29.85 0.16 -1.79 16 23 C -0.14 -2.86 9.72 71.98 0.70 -2.16 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.83 6.79 -2.39 -0.02 0.82 16 27 H 0.09 1.18 8.05 -2.39 -0.02 1.16 16 28 H 0.09 1.25 5.60 -2.38 -0.01 1.24 16 29 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.21 6.91 1.34 -55.78 -0.07 6.83 16 31 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.07 3.05 6.57 -2.39 -0.02 3.04 16 33 H 0.09 3.57 5.12 -2.39 -0.01 3.55 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.76 5.11 -2.39 -0.01 2.75 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.10 4.46 7.68 -2.91 -0.02 4.43 16 38 H 0.06 1.52 8.05 -2.38 -0.02 1.50 16 39 H 0.10 1.77 5.59 -2.39 -0.01 1.76 16 40 H 0.07 1.18 6.79 -2.39 -0.02 1.16 16 41 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -77.55 329.07 6.35 -71.20 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.95 Total: 25.12 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 4.85 Total: -23.93 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -1.42 Total: -74.96 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -0.07 Total: -41.86 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.44 kcal Total: -77.55 6.35 -71.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337209483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.077 kcal (2) G-P(sol) polarization free energy of solvation -77.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds