Wall clock time and date at job start Mon Mar 30 2020 02:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.47264 * 2 1 4 4 C 1.38382 * 119.85215 * 265.30153 * 3 2 1 5 5 C 1.37933 * 120.14181 * 180.25841 * 4 3 2 6 6 C 1.39597 * 119.85287 * 359.44000 * 5 4 3 7 7 C 1.47849 * 120.14556 * 180.30535 * 6 5 4 8 8 O 1.21551 * 120.00028 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99923 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00065 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.46831 * 35.00299 * 10 9 7 12 12 C 1.53003 * 109.47060 * 275.00135 * 10 9 7 13 13 C 1.50702 * 109.47095 * 155.00211 * 10 9 7 14 14 H 1.07999 * 120.00016 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99780 * 179.97438 * 13 10 9 16 16 N 1.31509 * 120.00223 * 0.02562 * 15 13 10 17 17 Si 1.86808 * 119.99588 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47317 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46919 * 120.00517 * 17 15 13 20 20 H 1.48501 * 109.46811 * 240.00260 * 17 15 13 21 21 C 1.39560 * 119.71293 * 0.28034 * 6 5 4 22 22 C 1.37981 * 119.84941 * 359.97438 * 21 6 5 23 23 C 1.50696 * 119.92492 * 180.02562 * 22 21 6 24 24 C 1.53000 * 109.47605 * 265.00282 * 23 22 21 25 25 H 1.08999 * 109.46838 * 300.00016 * 1 2 3 26 26 H 1.09000 * 109.47170 * 59.99786 * 1 2 3 27 27 H 1.08997 * 109.46610 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47285 * 239.99795 * 2 1 3 29 29 H 1.09000 * 109.47298 * 119.99676 * 2 1 3 30 30 H 1.07998 * 119.92827 * 359.97306 * 4 3 2 31 31 H 1.08002 * 120.07617 * 179.72206 * 5 4 3 32 32 H 0.97006 * 120.00122 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.47128 * 300.00054 * 12 10 9 34 34 H 1.08998 * 109.47023 * 60.00050 * 12 10 9 35 35 H 1.08998 * 109.46778 * 180.02562 * 12 10 9 36 36 H 0.97003 * 120.00328 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.07565 * 179.97438 * 21 6 5 38 38 H 1.09005 * 109.47431 * 25.00732 * 23 22 21 39 39 H 1.09000 * 109.47150 * 145.00157 * 23 22 21 40 40 H 1.08996 * 109.47164 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.46891 * 300.00027 * 24 23 22 42 42 H 1.09000 * 109.46969 * 59.99764 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3547 2.0375 -1.1962 5 6 2.8201 3.3359 -1.2027 6 6 2.9546 4.0320 -0.0001 7 6 3.4464 5.4262 -0.0002 8 8 3.5620 6.0300 1.0485 9 7 3.7665 6.0278 -1.1629 10 6 4.2544 7.4092 -1.1630 11 1 4.8600 7.5806 -0.2731 12 6 3.0640 8.3705 -1.1627 13 6 5.0913 7.6463 -2.3936 14 1 5.2440 6.8481 -3.1048 15 6 5.6609 8.8827 -2.6121 16 7 5.4745 9.8549 -1.7464 17 14 6.6977 9.1768 -4.1380 18 1 6.7525 7.9325 -4.9466 19 1 6.0916 10.2655 -4.9460 20 1 8.0727 9.5665 -3.7345 21 6 2.6222 3.4061 1.2022 22 6 2.1628 2.1051 1.1952 23 6 1.8029 1.4279 2.4924 24 6 2.9997 0.6172 2.9938 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.2460 1.4994 -2.1262 31 1 3.0756 3.8147 -2.1365 32 1 3.6739 5.5461 -1.9998 33 1 2.4583 8.1990 -2.0525 34 1 2.4587 8.1990 -0.2726 35 1 3.4270 9.3982 -1.1632 36 1 5.8750 10.7249 -1.9002 37 1 2.7244 3.9390 2.1360 38 1 1.5379 2.1812 3.2343 39 1 0.9549 0.7622 2.3317 40 1 2.7392 0.1270 3.9319 41 1 3.2646 -0.1362 2.2520 42 1 3.8478 1.2829 3.1545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341762180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:53 Heat of formation + Delta-G solvation = -40.933602 kcal Electronic energy + Delta-G solvation = -20902.813476 eV Core-core repulsion = 17846.564693 eV Total energy + Delta-G solvation = -3056.248783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.05891 -38.40735 -34.84636 -34.63337 -33.50290 -32.35763 -29.97011 -29.63552 -28.25488 -25.26312 -24.78235 -23.71636 -21.93987 -21.52230 -20.49639 -19.13501 -17.59923 -16.26141 -15.99151 -15.42218 -15.12765 -14.68684 -14.23738 -14.16533 -13.82016 -13.69824 -13.57692 -13.30842 -13.08383 -12.57446 -12.51541 -12.37950 -11.89185 -11.75028 -11.51779 -11.43318 -11.20304 -11.08737 -10.95059 -10.82606 -10.72671 -10.64813 -10.29603 -10.23474 -9.10940 -9.02531 -8.75054 -8.56850 -8.52813 -7.88421 -6.11982 -4.21283 1.06648 1.45036 3.24030 3.30501 3.31928 3.34659 4.07046 4.20333 4.38198 4.59322 4.69250 4.82168 4.87518 5.11147 5.15368 5.20383 5.23230 5.27975 5.38272 5.42358 5.51074 5.57220 5.65133 5.69360 5.79589 5.92157 5.97115 6.00401 6.13620 6.18327 6.45035 6.55966 6.63448 6.84347 6.97636 7.00724 7.16126 7.46077 7.57549 7.70485 7.92535 8.15352 8.66637 8.78519 9.11894 9.46289 10.94134 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029923 B = 0.003653 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.495373 B = 7662.174965 C = 8078.666590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.067 4.067 4 C -0.124 4.124 5 C -0.090 4.090 6 C -0.122 4.122 7 C 0.541 3.459 8 O -0.553 6.553 9 N -0.702 5.702 10 C 0.263 3.737 11 H 0.050 0.950 12 C -0.147 4.147 13 C -0.533 4.533 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C -0.061 4.061 22 C -0.092 4.092 23 C -0.086 4.086 24 C -0.148 4.148 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.388 0.612 33 H 0.026 0.974 34 H 0.015 0.985 35 H 0.091 0.909 36 H 0.264 0.736 37 H 0.133 0.867 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 -19.557 3.093 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.068 4.068 4 C -0.142 4.142 5 C -0.109 4.109 6 C -0.125 4.125 7 C 0.327 3.673 8 O -0.433 6.433 9 N -0.349 5.349 10 C 0.162 3.838 11 H 0.068 0.932 12 C -0.206 4.206 13 C -0.572 4.572 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.729 3.271 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.079 4.079 22 C -0.092 4.092 23 C -0.123 4.123 24 C -0.205 4.205 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.221 0.779 33 H 0.045 0.955 34 H 0.034 0.966 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.151 0.849 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.329 -18.873 3.850 20.986 hybrid contribution 0.562 0.135 -1.371 1.488 sum -7.767 -18.738 2.479 20.435 Atomic orbital electron populations 1.21764 0.94739 1.01561 1.02431 1.20621 0.96204 0.92821 1.02939 1.19844 0.98317 0.95939 0.92664 1.20912 1.00862 0.94996 0.97468 1.21358 0.97541 0.94497 0.97477 1.20287 1.02847 0.95255 0.94102 1.18263 0.78663 0.85547 0.84860 1.90714 1.54894 1.66122 1.31556 1.46492 1.64168 1.17136 1.07147 1.18784 0.92004 0.74673 0.98370 0.93234 1.22079 0.97559 1.04029 0.96902 1.21253 1.31557 0.97534 1.06850 0.92019 1.24890 0.96213 0.95748 0.96861 1.69913 1.43856 1.03035 1.35259 0.86389 0.79947 0.78245 0.82486 1.19724 1.20859 1.20849 1.21150 0.95313 0.93489 0.97997 1.19651 1.00811 0.94014 0.94735 1.20578 0.98596 0.99273 0.93887 1.21773 0.98154 1.00005 1.00607 0.92368 0.92447 0.92488 0.91114 0.90607 0.85823 0.85474 0.77865 0.95452 0.96590 0.89065 0.92612 0.84902 0.90948 0.90747 0.92487 0.92551 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.72 37.16 0.36 -0.75 16 2 C -0.09 -0.74 5.37 -27.88 -0.15 -0.89 16 3 C -0.07 -0.76 5.14 -104.53 -0.54 -1.30 16 4 C -0.12 -1.48 9.66 -39.64 -0.38 -1.86 16 5 C -0.09 -1.27 9.54 -39.19 -0.37 -1.65 16 6 C -0.12 -2.08 5.87 -104.96 -0.62 -2.70 16 7 C 0.54 11.66 7.74 -12.33 -0.10 11.56 16 8 O -0.55 -13.92 16.01 5.32 0.09 -13.84 16 9 N -0.70 -15.35 5.02 -55.88 -0.28 -15.63 16 10 C 0.26 6.88 2.56 -69.08 -0.18 6.71 16 11 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 12 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 13 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.88 -25.12 11.32 55.43 0.63 -24.50 16 17 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.06 -0.94 9.22 -39.18 -0.36 -1.30 16 22 C -0.09 -1.14 5.13 -104.68 -0.54 -1.68 16 23 C -0.09 -0.83 5.37 -27.88 -0.15 -0.98 16 24 C -0.15 -1.30 9.72 37.16 0.36 -0.94 16 25 H 0.06 0.45 6.79 -51.93 -0.35 0.10 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 29 H 0.08 0.58 5.59 -51.93 -0.29 0.29 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.13 1.64 6.41 -52.49 -0.34 1.30 16 32 H 0.39 7.34 6.57 -40.82 -0.27 7.07 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.13 2.12 7.65 -52.49 -0.40 1.72 16 38 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 39 H 0.07 0.61 5.60 -51.93 -0.29 0.32 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.47 6.79 -51.93 -0.35 0.12 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -31.07 339.65 -8.52 -39.59 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.34 Total: 5.64 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -2.71 Total: -12.13 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.35 Total: -40.13 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.07 -8.52 -39.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341762180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.345 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds