Wall clock time and date at job start Mon Mar 30 2020 02:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.47264 * 2 1 4 4 C 1.38382 * 119.85215 * 265.30153 * 3 2 1 5 5 C 1.37933 * 120.14181 * 180.25841 * 4 3 2 6 6 C 1.39597 * 119.85287 * 359.44000 * 5 4 3 7 7 C 1.47849 * 120.14556 * 180.30535 * 6 5 4 8 8 O 1.21551 * 120.00028 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99923 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00065 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.46831 * 35.00299 * 10 9 7 12 12 C 1.53003 * 109.47060 * 275.00135 * 10 9 7 13 13 C 1.50702 * 109.47095 * 155.00211 * 10 9 7 14 14 H 1.07999 * 120.00016 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99780 * 179.97438 * 13 10 9 16 16 N 1.31509 * 120.00223 * 0.02562 * 15 13 10 17 17 Si 1.86808 * 119.99588 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47317 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46919 * 120.00517 * 17 15 13 20 20 H 1.48501 * 109.46811 * 240.00260 * 17 15 13 21 21 C 1.39560 * 119.71293 * 0.28034 * 6 5 4 22 22 C 1.37981 * 119.84941 * 359.97438 * 21 6 5 23 23 C 1.50696 * 119.92492 * 180.02562 * 22 21 6 24 24 C 1.53000 * 109.47605 * 265.00282 * 23 22 21 25 25 H 1.08999 * 109.46838 * 300.00016 * 1 2 3 26 26 H 1.09000 * 109.47170 * 59.99786 * 1 2 3 27 27 H 1.08997 * 109.46610 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47285 * 239.99795 * 2 1 3 29 29 H 1.09000 * 109.47298 * 119.99676 * 2 1 3 30 30 H 1.07998 * 119.92827 * 359.97306 * 4 3 2 31 31 H 1.08002 * 120.07617 * 179.72206 * 5 4 3 32 32 H 0.97006 * 120.00122 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.47128 * 300.00054 * 12 10 9 34 34 H 1.08998 * 109.47023 * 60.00050 * 12 10 9 35 35 H 1.08998 * 109.46778 * 180.02562 * 12 10 9 36 36 H 0.97003 * 120.00328 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.07565 * 179.97438 * 21 6 5 38 38 H 1.09005 * 109.47431 * 25.00732 * 23 22 21 39 39 H 1.09000 * 109.47150 * 145.00157 * 23 22 21 40 40 H 1.08996 * 109.47164 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.46891 * 300.00027 * 24 23 22 42 42 H 1.09000 * 109.46969 * 59.99764 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3547 2.0375 -1.1962 5 6 2.8201 3.3359 -1.2027 6 6 2.9546 4.0320 -0.0001 7 6 3.4464 5.4262 -0.0002 8 8 3.5620 6.0300 1.0485 9 7 3.7665 6.0278 -1.1629 10 6 4.2544 7.4092 -1.1630 11 1 4.8600 7.5806 -0.2731 12 6 3.0640 8.3705 -1.1627 13 6 5.0913 7.6463 -2.3936 14 1 5.2440 6.8481 -3.1048 15 6 5.6609 8.8827 -2.6121 16 7 5.4745 9.8549 -1.7464 17 14 6.6977 9.1768 -4.1380 18 1 6.7525 7.9325 -4.9466 19 1 6.0916 10.2655 -4.9460 20 1 8.0727 9.5665 -3.7345 21 6 2.6222 3.4061 1.2022 22 6 2.1628 2.1051 1.1952 23 6 1.8029 1.4279 2.4924 24 6 2.9997 0.6172 2.9938 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.2460 1.4994 -2.1262 31 1 3.0756 3.8147 -2.1365 32 1 3.6739 5.5461 -1.9998 33 1 2.4583 8.1990 -2.0525 34 1 2.4587 8.1990 -0.2726 35 1 3.4270 9.3982 -1.1632 36 1 5.8750 10.7249 -1.9002 37 1 2.7244 3.9390 2.1360 38 1 1.5379 2.1812 3.2343 39 1 0.9549 0.7622 2.3317 40 1 2.7392 0.1270 3.9319 41 1 3.2646 -0.1362 2.2520 42 1 3.8478 1.2829 3.1545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341762180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:53 Heat of formation + Delta-G solvation = -58.755441 kcal Electronic energy + Delta-G solvation = -20903.586289 eV Core-core repulsion = 17846.564693 eV Total energy + Delta-G solvation = -3057.021596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.31751 -39.90958 -36.79456 -35.68423 -34.36488 -34.26171 -31.39346 -30.77044 -29.62485 -27.38514 -25.75862 -24.76920 -23.24436 -22.47012 -22.11136 -20.73067 -19.17364 -17.80187 -17.47975 -16.76223 -16.48058 -16.17477 -15.88004 -15.49231 -14.80595 -14.68370 -14.61200 -14.53013 -14.33351 -14.12432 -13.80292 -13.41912 -13.20646 -13.02088 -12.93201 -12.77968 -12.75688 -12.45892 -12.31476 -12.13801 -12.10107 -12.01145 -11.66392 -11.43753 -11.14093 -10.85400 -10.63087 -9.94490 -9.78486 -9.51261 -8.20132 -6.38435 -0.10999 0.39957 1.43822 1.44267 1.57054 1.92515 2.31764 2.55511 2.87571 3.10444 3.72524 3.76138 3.90220 4.00321 4.14940 4.24567 4.42990 4.49301 4.56348 4.56806 4.61992 4.69656 4.79153 4.87368 4.89572 5.03276 5.04260 5.07641 5.11394 5.13418 5.24325 5.36139 5.36961 5.38518 5.49749 5.52278 5.55968 5.63714 5.67830 5.86302 5.99384 6.04929 6.68352 6.87996 7.27624 7.45461 8.86866 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029923 B = 0.003653 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.495373 B = 7662.174965 C = 8078.666590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.055 4.055 4 C -0.119 4.119 5 C -0.091 4.091 6 C -0.151 4.151 7 C 0.537 3.463 8 O -0.602 6.602 9 N -0.697 5.697 10 C 0.269 3.731 11 H -0.002 1.002 12 C -0.133 4.133 13 C -0.548 4.548 14 H 0.074 0.926 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.976 3.024 18 H -0.259 1.259 19 H -0.277 1.277 20 H -0.283 1.283 21 C -0.077 4.077 22 C -0.091 4.091 23 C -0.086 4.086 24 C -0.146 4.146 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.159 0.841 31 H 0.137 0.863 32 H 0.404 0.596 33 H 0.042 0.958 34 H 0.009 0.991 35 H 0.070 0.930 36 H 0.266 0.734 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.223 -22.942 1.151 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.056 4.056 4 C -0.137 4.137 5 C -0.109 4.109 6 C -0.154 4.154 7 C 0.326 3.674 8 O -0.486 6.486 9 N -0.346 5.346 10 C 0.166 3.834 11 H 0.016 0.984 12 C -0.192 4.192 13 C -0.586 4.586 14 H 0.092 0.908 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.801 3.199 18 H -0.182 1.182 19 H -0.202 1.202 20 H -0.209 1.209 21 C -0.096 4.096 22 C -0.091 4.091 23 C -0.123 4.123 24 C -0.203 4.203 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.176 0.824 31 H 0.155 0.845 32 H 0.240 0.760 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.083 -22.299 1.886 24.152 hybrid contribution 0.739 1.086 -0.693 1.486 sum -8.344 -21.212 1.193 22.826 Atomic orbital electron populations 1.21767 0.93881 1.02765 1.02036 1.20731 0.96742 0.90462 1.04504 1.20322 0.95979 0.97417 0.91836 1.21301 0.99291 0.93922 0.99186 1.21495 0.97441 0.95493 0.96496 1.19953 1.06254 0.93006 0.96211 1.19003 0.77391 0.87250 0.83757 1.90670 1.56947 1.67819 1.33125 1.46223 1.64235 1.15836 1.08307 1.18414 0.91709 0.77032 0.96269 0.98414 1.21903 0.97368 1.02718 0.97240 1.21554 1.31890 0.98178 1.07017 0.90750 1.25846 0.97326 0.95384 1.00073 1.70062 1.44765 1.03549 1.37246 0.85233 0.77695 0.78596 0.78415 1.18236 1.20234 1.20892 1.21143 0.96648 0.95014 0.96771 1.19933 0.99706 0.92714 0.96762 1.20656 0.99753 0.99484 0.92378 1.21764 0.96984 0.99711 1.01859 0.92848 0.92856 0.90530 0.89308 0.89410 0.82377 0.84482 0.75991 0.93920 0.97158 0.91152 0.92438 0.86886 0.91437 0.88507 0.90573 0.91624 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.72 71.98 0.70 -0.92 16 2 C -0.09 -1.07 5.37 29.85 0.16 -0.91 16 3 C -0.06 -1.08 5.14 -19.80 -0.10 -1.18 16 4 C -0.12 -2.46 9.66 22.23 0.21 -2.24 16 5 C -0.09 -2.45 9.54 22.53 0.21 -2.24 16 6 C -0.15 -5.31 5.87 -20.09 -0.12 -5.42 16 7 C 0.54 24.44 7.74 86.79 0.67 25.12 16 8 O -0.60 -32.69 16.01 -3.88 -0.06 -32.75 16 9 N -0.70 -31.59 5.02 -448.98 -2.25 -33.84 16 10 C 0.27 14.70 2.56 44.25 0.11 14.81 16 11 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 12 C -0.13 -7.10 9.26 71.98 0.67 -6.43 16 13 C -0.55 -29.86 8.73 25.60 0.22 -29.64 16 14 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 15 C 0.01 0.75 5.30 84.65 0.45 1.20 16 16 N -0.92 -53.66 11.32 21.45 0.24 -53.42 16 17 Si 0.98 42.46 29.54 68.60 2.03 44.48 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 C -0.08 -2.45 9.22 22.53 0.21 -2.24 16 22 C -0.09 -2.14 5.13 -19.90 -0.10 -2.24 16 23 C -0.09 -1.50 5.37 29.85 0.16 -1.34 16 24 C -0.15 -2.26 9.72 71.98 0.70 -1.56 16 25 H 0.05 0.64 6.79 -2.39 -0.02 0.63 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 0.84 8.05 -2.39 -0.02 0.82 16 29 H 0.09 0.92 5.59 -2.39 -0.01 0.91 16 30 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 31 H 0.14 3.33 6.41 -2.91 -0.02 3.31 16 32 H 0.40 15.37 6.57 -92.70 -0.61 14.76 16 33 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 4.03 6.07 -2.39 -0.01 4.02 16 36 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.11 3.95 7.65 -2.91 -0.02 3.92 16 38 H 0.07 1.25 8.05 -2.38 -0.02 1.23 16 39 H 0.10 1.28 5.60 -2.39 -0.01 1.26 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 0.89 6.79 -2.39 -0.02 0.88 16 42 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -71.01 339.65 4.52 -66.49 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.41 Total: 24.27 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.16 Total: -15.24 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -2.01 Total: -87.26 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.06 Total: -32.75 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -71.01 4.52 -66.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341762180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.737 kcal (2) G-P(sol) polarization free energy of solvation -71.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds