Wall clock time and date at job start Mon Mar 30 2020 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47432 * 2 1 4 4 C 1.38377 * 119.85374 * 265.00335 * 3 2 1 5 5 C 1.37943 * 120.14482 * 180.02562 * 4 3 2 6 6 C 1.39589 * 119.85380 * 359.97438 * 5 4 3 7 7 C 1.47846 * 120.14445 * 179.97438 * 6 5 4 8 8 O 1.21554 * 119.99990 * 179.97438 * 7 6 5 9 9 N 1.34776 * 119.99942 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00020 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.47151 * 325.00020 * 10 9 7 12 12 C 1.53007 * 109.47408 * 84.99910 * 10 9 7 13 13 C 1.50698 * 109.47215 * 205.00231 * 10 9 7 14 14 H 1.07998 * 120.00246 * 325.86999 * 13 10 9 15 15 C 1.37884 * 120.00344 * 145.87194 * 13 10 9 16 16 N 1.31509 * 119.99984 * 177.63821 * 15 13 10 17 17 Si 1.86802 * 119.99604 * 357.63544 * 15 13 10 18 18 H 1.48503 * 109.47051 * 274.92178 * 17 15 13 19 19 H 1.48495 * 109.47203 * 34.92166 * 17 15 13 20 20 H 1.48502 * 109.47092 * 154.92682 * 17 15 13 21 21 C 1.39554 * 119.70980 * 0.24889 * 6 5 4 22 22 C 1.37979 * 119.85443 * 359.51552 * 21 6 5 23 23 C 1.50704 * 119.92976 * 180.22614 * 22 21 6 24 24 C 1.52994 * 109.47423 * 265.26364 * 23 22 21 25 25 H 1.09005 * 109.46748 * 300.00285 * 1 2 3 26 26 H 1.09000 * 109.47131 * 60.00052 * 1 2 3 27 27 H 1.09003 * 109.47452 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46748 * 239.99715 * 2 1 3 29 29 H 1.09000 * 109.47131 * 119.99948 * 2 1 3 30 30 H 1.07998 * 119.92741 * 0.02562 * 4 3 2 31 31 H 1.08008 * 120.06781 * 179.97438 * 5 4 3 32 32 H 0.97004 * 120.00024 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.46913 * 176.13554 * 12 10 9 34 34 H 1.08998 * 109.46973 * 296.14057 * 12 10 9 35 35 H 1.08997 * 109.46643 * 56.13715 * 12 10 9 36 36 H 0.97006 * 119.99900 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.07307 * 179.75315 * 21 6 5 38 38 H 1.09006 * 109.46637 * 25.26390 * 23 22 21 39 39 H 1.09001 * 109.46847 * 145.25336 * 23 22 21 40 40 H 1.08998 * 109.47233 * 59.99566 * 24 23 22 41 41 H 1.08999 * 109.47207 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.46529 * 299.99757 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3606 2.0353 -1.1956 5 6 2.8215 3.3354 -1.2025 6 6 2.9561 4.0314 0.0000 7 6 3.4501 5.4249 0.0001 8 8 3.5658 6.0286 1.0487 9 7 3.7721 6.0258 -1.1625 10 6 4.2620 7.4063 -1.1624 11 1 3.7606 7.9698 -0.3755 12 6 5.7713 7.4119 -0.9110 13 6 3.9729 8.0421 -2.4978 14 1 4.0069 7.4466 -3.3981 15 6 3.6649 9.3842 -2.5702 16 7 3.4582 9.9492 -3.7396 17 14 3.5412 10.3997 -1.0072 18 1 2.1771 10.2648 -0.4359 19 1 4.5407 9.9150 -0.0216 20 1 3.8074 11.8264 -1.3215 21 6 2.6278 3.4041 1.2026 22 6 2.1633 2.1049 1.1952 23 6 1.8034 1.4276 2.4925 24 6 3.0001 0.6169 2.9938 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2556 1.4959 -2.1253 31 1 3.0777 3.8138 -2.1364 32 1 3.6793 5.5441 -1.9994 33 1 6.1472 8.4328 -0.9790 34 1 5.9754 7.0150 0.0834 35 1 6.2664 6.7919 -1.6584 36 1 3.2412 10.8933 -3.7905 37 1 2.7335 3.9357 2.1368 38 1 1.5385 2.1811 3.2344 39 1 0.9552 0.7621 2.3318 40 1 3.8482 1.2825 3.1544 41 1 2.7397 0.1267 3.9318 42 1 3.2649 -0.1364 2.2518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341762181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:57 Heat of formation + Delta-G solvation = -41.220428 kcal Electronic energy + Delta-G solvation = -20981.783723 eV Core-core repulsion = 17925.522502 eV Total energy + Delta-G solvation = -3056.261220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11709 -38.53205 -34.94619 -34.68522 -33.52892 -32.35114 -30.30813 -29.83979 -28.62772 -25.31986 -24.81982 -23.76341 -21.94710 -21.55697 -20.40053 -19.32444 -17.70402 -16.44011 -16.28438 -15.50682 -15.19825 -14.77555 -14.28030 -14.04114 -13.86312 -13.73291 -13.67318 -13.30928 -13.18817 -12.59261 -12.53796 -12.48043 -12.35922 -11.95288 -11.67771 -11.46929 -11.36291 -11.23086 -11.12450 -10.86182 -10.82534 -10.67862 -10.53788 -9.88501 -9.22975 -9.18606 -8.78692 -8.72606 -8.59324 -8.06416 -6.23311 -4.27285 1.01871 1.41810 3.22759 3.27800 3.34737 3.42394 3.96577 4.12044 4.33109 4.56704 4.66591 4.79392 4.84368 5.06137 5.13382 5.15068 5.21159 5.24891 5.34320 5.39608 5.48291 5.53558 5.62726 5.67487 5.76383 5.89153 5.95133 5.96994 6.10002 6.15333 6.32751 6.41776 6.50444 6.55890 6.60546 6.68298 6.93980 6.96449 7.19190 7.38338 7.54391 8.13796 8.56183 8.76495 8.96270 9.38574 10.88385 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028388 B = 0.003970 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.101497 B = 7050.755288 C = 7478.299583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.066 4.066 4 C -0.124 4.124 5 C -0.088 4.088 6 C -0.124 4.124 7 C 0.542 3.458 8 O -0.557 6.557 9 N -0.697 5.697 10 C 0.231 3.769 11 H 0.050 0.950 12 C -0.148 4.148 13 C -0.531 4.531 14 H 0.079 0.921 15 C 0.081 3.919 16 N -0.889 5.889 17 Si 0.874 3.126 18 H -0.273 1.273 19 H -0.260 1.260 20 H -0.285 1.285 21 C -0.060 4.060 22 C -0.092 4.092 23 C -0.086 4.086 24 C -0.148 4.148 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.393 0.607 33 H 0.055 0.945 34 H 0.029 0.971 35 H 0.045 0.955 36 H 0.268 0.732 37 H 0.133 0.867 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 -20.546 8.017 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.066 4.066 4 C -0.142 4.142 5 C -0.107 4.107 6 C -0.127 4.127 7 C 0.328 3.672 8 O -0.438 6.438 9 N -0.345 5.345 10 C 0.129 3.871 11 H 0.068 0.932 12 C -0.207 4.207 13 C -0.569 4.569 14 H 0.097 0.903 15 C -0.123 4.123 16 N -0.526 5.526 17 Si 0.701 3.299 18 H -0.198 1.198 19 H -0.184 1.184 20 H -0.211 1.211 21 C -0.079 4.079 22 C -0.092 4.092 23 C -0.124 4.124 24 C -0.205 4.205 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.227 0.773 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.151 0.849 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.621 -19.883 8.627 21.975 hybrid contribution -0.116 0.540 0.114 0.564 sum -3.737 -19.343 8.741 21.553 Atomic orbital electron populations 1.21768 0.94688 1.01598 1.02479 1.20624 0.96259 0.92773 1.02951 1.19857 0.98093 0.95975 0.92662 1.20930 1.00756 0.94990 0.97519 1.21378 0.97391 0.94435 0.97471 1.20218 1.03255 0.95052 0.94168 1.18354 0.78320 0.85743 0.84793 1.90701 1.55536 1.65949 1.31600 1.46572 1.64046 1.16437 1.07438 1.19130 0.90985 0.78683 0.98297 0.93200 1.22239 0.98823 1.01041 0.98628 1.21003 1.49068 0.95044 0.91815 0.90323 1.24926 0.93558 0.97613 0.96208 1.69877 1.46424 1.12451 1.23801 0.86897 0.79804 0.79288 0.83945 1.19829 1.18400 1.21144 1.21138 0.95342 0.93507 0.97936 1.19648 1.00798 0.94040 0.94750 1.20580 0.98623 0.99283 0.93872 1.21771 0.98116 0.99993 1.00634 0.92374 0.92385 0.92459 0.91067 0.90611 0.85719 0.85328 0.77272 0.92590 0.95167 0.93575 0.92229 0.84942 0.90968 0.90695 0.92358 0.92477 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.72 37.16 0.36 -0.76 16 2 C -0.09 -0.73 5.37 -27.89 -0.15 -0.88 16 3 C -0.07 -0.73 5.14 -104.54 -0.54 -1.26 16 4 C -0.12 -1.45 9.66 -39.64 -0.38 -1.83 16 5 C -0.09 -1.22 9.54 -39.19 -0.37 -1.60 16 6 C -0.12 -2.06 5.87 -104.97 -0.62 -2.67 16 7 C 0.54 11.21 7.74 -12.33 -0.10 11.12 16 8 O -0.56 -13.35 16.01 5.32 0.09 -13.27 16 9 N -0.70 -14.68 5.02 -55.88 -0.28 -14.96 16 10 C 0.23 5.65 2.16 -69.08 -0.15 5.50 16 11 H 0.05 1.33 4.89 -51.93 -0.25 1.07 16 12 C -0.15 -3.33 9.44 37.16 0.35 -2.98 16 13 C -0.53 -14.44 9.05 -34.44 -0.31 -14.75 16 14 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 15 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 16 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 17 Si 0.87 21.79 26.74 -169.99 -4.55 17.25 16 18 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.26 -6.37 6.87 56.52 0.39 -5.98 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 C -0.06 -0.90 9.22 -39.19 -0.36 -1.27 16 22 C -0.09 -1.11 5.13 -104.68 -0.54 -1.65 16 23 C -0.09 -0.81 5.37 -27.88 -0.15 -0.96 16 24 C -0.15 -1.24 9.72 37.15 0.36 -0.88 16 25 H 0.06 0.46 6.79 -51.93 -0.35 0.10 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 29 H 0.08 0.56 5.59 -51.93 -0.29 0.27 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.13 1.64 6.41 -52.48 -0.34 1.30 16 32 H 0.39 7.28 6.63 -40.82 -0.27 7.01 16 33 H 0.06 1.26 7.92 -51.93 -0.41 0.85 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.13 2.04 7.65 -52.48 -0.40 1.64 16 38 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 39 H 0.07 0.60 5.60 -51.93 -0.29 0.31 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.45 6.79 -51.93 -0.35 0.10 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -31.67 339.06 -7.87 -39.54 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.33 Total: 4.53 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -2.69 Total: -12.68 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.49 Total: -40.48 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.55 Total: 17.25 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.67 -7.87 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341762181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.677 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds