Wall clock time and date at job start Mon Mar 30 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47159 * 2 1 4 4 C 1.50699 * 109.47119 * 180.02562 * 3 2 1 5 5 C 1.37977 * 120.07245 * 266.34725 * 4 3 2 6 6 C 1.38338 * 120.14993 * 179.97438 * 5 4 3 7 7 C 1.38381 * 120.28779 * 0.04110 * 6 5 4 8 8 C 1.37938 * 120.14599 * 359.95619 * 7 6 5 9 9 C 1.39551 * 120.07717 * 86.36445 * 4 3 2 10 10 C 1.47848 * 120.14590 * 359.70609 * 9 4 3 11 11 O 1.21556 * 119.99882 * 310.33437 * 10 9 4 12 12 N 1.34772 * 120.00249 * 130.33052 * 10 9 4 13 13 C 1.46505 * 119.99952 * 4.27866 * 12 10 9 14 14 C 1.46504 * 120.00035 * 184.27505 * 12 10 9 15 15 H 1.09000 * 109.46816 * 359.97438 * 14 12 10 16 16 C 1.53006 * 109.46960 * 240.00104 * 14 12 10 17 17 C 1.50698 * 109.46945 * 120.00280 * 14 12 10 18 18 H 1.07994 * 119.99993 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99834 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99752 * 359.97438 * 19 17 14 21 21 Si 1.86793 * 119.99778 * 179.97438 * 19 17 14 22 22 H 1.48495 * 109.47478 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47071 * 120.00055 * 21 19 17 24 24 H 1.48501 * 109.47032 * 239.99956 * 21 19 17 25 25 H 1.09000 * 109.46917 * 59.99715 * 1 2 3 26 26 H 1.08994 * 109.47127 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46816 * 300.00733 * 1 2 3 28 28 H 1.08999 * 109.47393 * 239.99763 * 2 1 3 29 29 H 1.09003 * 109.46892 * 119.99511 * 2 1 3 30 30 H 1.08987 * 109.47517 * 59.99797 * 3 2 1 31 31 H 1.09003 * 109.46819 * 299.99556 * 3 2 1 32 32 H 1.08008 * 119.92620 * 0.02562 * 5 4 3 33 33 H 1.07997 * 119.85823 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.92679 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.07191 * 180.02562 * 8 7 6 36 36 H 1.08995 * 109.47130 * 86.10545 * 13 12 10 37 37 H 1.08999 * 109.46625 * 206.10826 * 13 12 10 38 38 H 1.08997 * 109.46816 * 326.10287 * 13 12 10 39 39 H 1.08992 * 109.47045 * 299.99928 * 16 14 12 40 40 H 1.09001 * 109.47081 * 59.99949 * 16 14 12 41 41 H 1.08999 * 109.46570 * 179.97438 * 16 14 12 42 42 H 0.97003 * 119.99687 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2389 1.5184 1.1907 6 6 5.6223 1.5180 1.1920 7 6 6.3213 1.4424 0.0001 8 6 5.6418 1.3660 -1.1978 9 6 4.2459 1.3661 -1.2061 10 6 3.5111 1.2784 -2.4861 11 8 2.6214 0.4613 -2.6213 12 7 3.8277 2.1044 -3.5029 13 6 4.9604 3.0246 -3.3736 14 6 3.0392 2.0821 -4.7374 15 1 2.2459 1.3399 -4.6485 16 6 3.9462 1.7199 -5.9153 17 6 2.4323 3.4416 -4.9704 18 1 2.6151 4.2420 -4.2688 19 6 1.6425 3.6633 -6.0788 20 7 1.4195 2.6884 -6.9328 21 14 0.8896 5.3482 -6.3671 22 1 1.2896 6.2638 -5.2686 23 1 1.3704 5.8900 -7.6635 24 1 -0.5904 5.2303 -6.3983 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6768 1.9564 0.8898 31 1 1.6767 1.9563 -0.8901 32 1 3.6993 1.5775 2.1244 33 1 6.1591 1.5772 2.1273 34 1 7.4013 1.4429 0.0079 35 1 6.1886 1.3067 -2.1274 36 1 5.8785 2.5137 -3.6635 37 1 4.8039 3.8866 -4.0221 38 1 5.0412 3.3581 -2.3391 39 1 4.7397 2.4617 -6.0043 40 1 4.3853 0.7365 -5.7467 41 1 3.3594 1.7028 -6.8337 42 1 0.8642 2.8444 -7.7127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350037491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:20 Heat of formation + Delta-G solvation = -23.153899 kcal Electronic energy + Delta-G solvation = -21928.410743 eV Core-core repulsion = 18872.932946 eV Total energy + Delta-G solvation = -3055.477797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.06587 -37.95370 -35.53982 -34.57197 -32.93010 -31.11400 -30.90543 -29.03890 -26.41654 -26.03842 -25.22099 -23.49821 -22.08725 -21.27776 -20.27490 -18.60386 -16.85557 -16.32599 -15.95461 -15.56541 -15.38492 -14.63222 -14.29289 -13.98640 -13.80146 -13.49014 -13.29437 -12.92000 -12.52084 -12.39912 -12.22792 -11.90810 -11.68574 -11.61546 -11.43841 -11.24256 -11.07357 -10.87712 -10.83938 -10.74029 -10.58160 -10.25346 -10.19927 -10.14254 -9.18975 -8.94817 -8.71981 -8.54545 -8.42411 -7.57970 -6.08236 -4.16119 1.23410 1.46939 3.25142 3.32512 3.34758 3.38762 3.83096 4.09743 4.39280 4.89634 4.91265 5.03955 5.08904 5.23156 5.32606 5.43426 5.52232 5.57493 5.68228 5.81469 5.85685 5.99465 6.01469 6.08845 6.14143 6.16464 6.39088 6.39637 6.44936 6.52376 6.55839 6.71808 6.77107 6.81022 6.87200 7.02727 7.07222 7.44185 7.53694 7.71618 8.01598 8.19020 8.52310 8.82516 9.05125 9.50523 10.97074 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.005789 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.079281 B = 4835.646824 C = 5552.903995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.081 4.081 4 C -0.035 4.035 5 C -0.127 4.127 6 C -0.108 4.108 7 C -0.134 4.134 8 C -0.090 4.090 9 C -0.112 4.112 10 C 0.546 3.454 11 O -0.539 6.539 12 N -0.585 5.585 13 C 0.082 3.918 14 C 0.258 3.742 15 H 0.064 0.936 16 C -0.146 4.146 17 C -0.525 4.525 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.897 3.103 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.029 0.971 40 H 0.011 0.989 41 H 0.093 0.907 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.482 -1.391 13.737 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.118 4.118 4 C -0.036 4.036 5 C -0.145 4.145 6 C -0.126 4.126 7 C -0.152 4.152 8 C -0.108 4.108 9 C -0.115 4.115 10 C 0.332 3.668 11 O -0.418 6.418 12 N -0.315 5.315 13 C -0.062 4.062 14 C 0.158 3.842 15 H 0.082 0.918 16 C -0.204 4.204 17 C -0.564 4.564 18 H 0.078 0.922 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.725 3.275 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.030 0.970 41 H 0.112 0.888 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.900 -1.838 13.437 15.216 hybrid contribution -0.201 1.066 -0.218 1.107 sum 6.698 -0.772 13.219 14.839 Atomic orbital electron populations 1.21718 0.96083 1.01177 1.01457 1.21568 0.95526 0.95624 1.02924 1.20649 0.89986 0.98500 1.02707 1.19957 0.96220 0.95788 0.91594 1.20951 0.94183 1.02119 0.97249 1.21191 0.94188 0.99302 0.97964 1.21016 0.99750 1.02156 0.92312 1.21389 0.93027 0.97774 0.98628 1.20120 0.93909 1.03334 0.94159 1.18255 0.83307 0.81869 0.83334 1.90688 1.31897 1.36996 1.82221 1.48192 1.30744 1.35958 1.16622 1.21725 0.88372 0.94629 1.01431 1.18968 0.89521 0.98097 0.77593 0.91805 1.22080 0.99162 0.96225 1.02976 1.21356 1.30524 0.96294 1.08214 0.92198 1.24888 0.95998 0.97107 0.95747 1.69894 1.38205 1.31447 1.12955 0.86453 0.79084 0.83914 0.78036 1.19815 1.20917 1.20900 0.92283 0.93102 0.93624 0.89094 0.93230 0.91732 0.90276 0.85936 0.86173 0.85951 0.85427 0.93975 0.90063 0.92574 0.95181 0.97000 0.88829 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -1.85 5.67 -26.73 -0.15 -2.00 16 3 C -0.08 -1.28 4.64 -27.88 -0.13 -1.41 16 4 C -0.03 -0.54 5.16 -104.23 -0.54 -1.08 16 5 C -0.13 -1.60 9.67 -39.64 -0.38 -1.99 16 6 C -0.11 -1.22 10.04 -39.49 -0.40 -1.61 16 7 C -0.13 -1.58 10.03 -39.64 -0.40 -1.97 16 8 C -0.09 -1.28 7.81 -39.19 -0.31 -1.59 16 9 C -0.11 -1.93 4.85 -104.97 -0.51 -2.43 16 10 C 0.55 11.58 6.30 -12.33 -0.08 11.50 16 11 O -0.54 -12.99 12.92 5.32 0.07 -12.92 16 12 N -0.58 -12.65 2.75 -176.37 -0.49 -13.14 16 13 C 0.08 1.44 8.04 59.85 0.48 1.92 16 14 C 0.26 6.58 2.63 -69.08 -0.18 6.40 16 15 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 16 C -0.15 -3.50 8.97 37.16 0.33 -3.17 16 17 C -0.53 -14.12 7.96 -34.44 -0.27 -14.40 16 18 H 0.06 1.60 7.40 -52.49 -0.39 1.21 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 21 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.09 1.70 5.88 -51.93 -0.31 1.39 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.86 8.06 -51.94 -0.42 0.44 16 31 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 32 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.71 6.44 -52.48 -0.34 1.37 16 36 H 0.04 0.64 7.17 -51.93 -0.37 0.27 16 37 H 0.08 1.49 7.08 -51.93 -0.37 1.13 16 38 H 0.06 0.88 6.24 -51.93 -0.32 0.56 16 39 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -29.91 333.93 -8.50 -38.41 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.47 Total: 2.89 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.26 Total: -11.87 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.14 Total: -37.50 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.07 Total: -12.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.91 -8.50 -38.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350037491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.259 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds