Wall clock time and date at job start Mon Mar 30 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47159 * 2 1 4 4 C 1.50699 * 109.47119 * 180.02562 * 3 2 1 5 5 C 1.37977 * 120.07245 * 266.34725 * 4 3 2 6 6 C 1.38338 * 120.14993 * 179.97438 * 5 4 3 7 7 C 1.38381 * 120.28779 * 0.04110 * 6 5 4 8 8 C 1.37938 * 120.14599 * 359.95619 * 7 6 5 9 9 C 1.39551 * 120.07717 * 86.36445 * 4 3 2 10 10 C 1.47848 * 120.14590 * 359.70609 * 9 4 3 11 11 O 1.21556 * 119.99882 * 310.33437 * 10 9 4 12 12 N 1.34772 * 120.00249 * 130.33052 * 10 9 4 13 13 C 1.46505 * 119.99952 * 4.27866 * 12 10 9 14 14 C 1.46504 * 120.00035 * 184.27505 * 12 10 9 15 15 H 1.09000 * 109.46816 * 359.97438 * 14 12 10 16 16 C 1.53006 * 109.46960 * 240.00104 * 14 12 10 17 17 C 1.50698 * 109.46945 * 120.00280 * 14 12 10 18 18 H 1.07994 * 119.99993 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99834 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99752 * 359.97438 * 19 17 14 21 21 Si 1.86793 * 119.99778 * 179.97438 * 19 17 14 22 22 H 1.48495 * 109.47478 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47071 * 120.00055 * 21 19 17 24 24 H 1.48501 * 109.47032 * 239.99956 * 21 19 17 25 25 H 1.09000 * 109.46917 * 59.99715 * 1 2 3 26 26 H 1.08994 * 109.47127 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46816 * 300.00733 * 1 2 3 28 28 H 1.08999 * 109.47393 * 239.99763 * 2 1 3 29 29 H 1.09003 * 109.46892 * 119.99511 * 2 1 3 30 30 H 1.08987 * 109.47517 * 59.99797 * 3 2 1 31 31 H 1.09003 * 109.46819 * 299.99556 * 3 2 1 32 32 H 1.08008 * 119.92620 * 0.02562 * 5 4 3 33 33 H 1.07997 * 119.85823 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.92679 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.07191 * 180.02562 * 8 7 6 36 36 H 1.08995 * 109.47130 * 86.10545 * 13 12 10 37 37 H 1.08999 * 109.46625 * 206.10826 * 13 12 10 38 38 H 1.08997 * 109.46816 * 326.10287 * 13 12 10 39 39 H 1.08992 * 109.47045 * 299.99928 * 16 14 12 40 40 H 1.09001 * 109.47081 * 59.99949 * 16 14 12 41 41 H 1.08999 * 109.46570 * 179.97438 * 16 14 12 42 42 H 0.97003 * 119.99687 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2389 1.5184 1.1907 6 6 5.6223 1.5180 1.1920 7 6 6.3213 1.4424 0.0001 8 6 5.6418 1.3660 -1.1978 9 6 4.2459 1.3661 -1.2061 10 6 3.5111 1.2784 -2.4861 11 8 2.6214 0.4613 -2.6213 12 7 3.8277 2.1044 -3.5029 13 6 4.9604 3.0246 -3.3736 14 6 3.0392 2.0821 -4.7374 15 1 2.2459 1.3399 -4.6485 16 6 3.9462 1.7199 -5.9153 17 6 2.4323 3.4416 -4.9704 18 1 2.6151 4.2420 -4.2688 19 6 1.6425 3.6633 -6.0788 20 7 1.4195 2.6884 -6.9328 21 14 0.8896 5.3482 -6.3671 22 1 1.2896 6.2638 -5.2686 23 1 1.3704 5.8900 -7.6635 24 1 -0.5904 5.2303 -6.3983 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6768 1.9564 0.8898 31 1 1.6767 1.9563 -0.8901 32 1 3.6993 1.5775 2.1244 33 1 6.1591 1.5772 2.1273 34 1 7.4013 1.4429 0.0079 35 1 6.1886 1.3067 -2.1274 36 1 5.8785 2.5137 -3.6635 37 1 4.8039 3.8866 -4.0221 38 1 5.0412 3.3581 -2.3391 39 1 4.7397 2.4617 -6.0043 40 1 4.3853 0.7365 -5.7467 41 1 3.3594 1.7028 -6.8337 42 1 0.8642 2.8444 -7.7127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350037491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:20 Heat of formation + Delta-G solvation = -39.281489 kcal Electronic energy + Delta-G solvation = -21929.110088 eV Core-core repulsion = 18872.932946 eV Total energy + Delta-G solvation = -3056.177142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.42341 -39.33342 -37.22663 -35.89137 -34.81656 -32.52091 -31.99142 -30.74173 -27.78584 -27.39294 -27.28521 -24.83597 -23.23260 -22.76599 -21.63867 -20.12473 -18.58201 -18.02894 -17.47191 -16.90036 -16.77250 -16.28233 -15.70629 -15.32864 -15.11004 -14.73470 -14.53842 -14.43973 -14.24763 -13.77780 -13.63471 -13.38334 -13.11043 -13.02201 -12.88274 -12.75984 -12.75173 -12.66623 -12.36924 -12.22552 -12.11840 -12.05962 -11.69011 -11.44982 -11.21448 -10.64199 -10.46498 -9.78511 -9.62398 -9.32463 -8.16967 -6.33502 0.13662 0.46554 1.38569 1.40190 1.51637 1.87250 2.31164 2.47824 2.87389 3.10956 3.66038 3.82760 3.92224 4.14169 4.22461 4.28330 4.41501 4.49099 4.51569 4.58916 4.65227 4.72704 4.76603 4.85140 4.87797 4.95121 4.95842 4.97262 5.04173 5.08763 5.24874 5.35205 5.42144 5.47875 5.49262 5.55076 5.57909 5.66888 5.71237 6.02211 6.06386 6.14203 6.74132 6.79804 7.29420 7.46114 8.87765 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.005789 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.079281 B = 4835.646824 C = 5552.903995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.077 4.077 4 C -0.054 4.054 5 C -0.124 4.124 6 C -0.093 4.093 7 C -0.125 4.125 8 C -0.095 4.095 9 C -0.142 4.142 10 C 0.537 3.463 11 O -0.584 6.584 12 N -0.595 5.595 13 C 0.084 3.916 14 C 0.264 3.736 15 H 0.009 0.991 16 C -0.131 4.131 17 C -0.537 4.537 18 H 0.058 0.942 19 C 0.016 3.984 20 N -0.917 5.917 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.284 1.284 25 H 0.028 0.972 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.131 0.869 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.018 0.982 41 H 0.068 0.932 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.757 -0.097 16.749 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.115 4.115 4 C -0.055 4.055 5 C -0.142 4.142 6 C -0.111 4.111 7 C -0.143 4.143 8 C -0.114 4.114 9 C -0.145 4.145 10 C 0.327 3.673 11 O -0.466 6.466 12 N -0.325 5.325 13 C -0.058 4.058 14 C 0.162 3.838 15 H 0.027 0.973 16 C -0.189 4.189 17 C -0.576 4.576 18 H 0.076 0.924 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.790 3.210 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.210 1.210 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.169 0.831 33 H 0.180 0.820 34 H 0.176 0.824 35 H 0.149 0.851 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.087 0.913 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.211 -0.530 16.462 18.872 hybrid contribution -0.869 0.604 -1.068 1.503 sum 8.343 0.073 15.394 17.510 Atomic orbital electron populations 1.21697 0.95381 1.01820 1.01221 1.21492 0.96195 0.95540 1.02050 1.20580 0.91022 0.98206 1.01652 1.20056 0.95857 0.97180 0.92384 1.21265 0.95174 1.00901 0.96812 1.21705 0.93635 0.96310 0.99468 1.21431 1.01525 1.00080 0.91235 1.21500 0.91612 0.97986 1.00300 1.19871 0.95124 1.07293 0.92190 1.19046 0.82920 0.80774 0.84588 1.90658 1.34025 1.38743 1.83153 1.48176 1.31527 1.37074 1.15680 1.21885 0.87721 0.93667 1.02545 1.18544 0.89220 0.96078 0.79976 0.97293 1.21863 0.98831 0.97090 1.01145 1.21565 1.31059 0.96648 1.08304 0.92389 1.25728 0.96322 1.00832 0.95470 1.70031 1.38710 1.33426 1.13375 0.85410 0.77835 0.79436 0.78364 1.19048 1.19760 1.21038 0.95268 0.92068 0.90972 0.93083 0.90718 0.88945 0.94895 0.83134 0.82041 0.82366 0.85090 0.91313 0.91193 0.90568 0.93445 0.96285 0.91303 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.91 71.98 0.71 -3.47 16 2 C -0.12 -3.67 5.67 30.60 0.17 -3.50 16 3 C -0.08 -2.48 4.64 29.85 0.14 -2.35 16 4 C -0.05 -1.63 5.16 -19.61 -0.10 -1.73 16 5 C -0.12 -2.65 9.67 22.23 0.22 -2.43 16 6 C -0.09 -1.59 10.04 22.33 0.22 -1.37 16 7 C -0.13 -2.35 10.03 22.23 0.22 -2.13 16 8 C -0.10 -2.52 7.81 22.53 0.18 -2.35 16 9 C -0.14 -4.87 4.85 -20.09 -0.10 -4.97 16 10 C 0.54 24.14 6.30 86.79 0.55 24.68 16 11 O -0.58 -30.76 12.92 -3.89 -0.05 -30.81 16 12 N -0.59 -26.84 2.75 -830.19 -2.29 -29.13 16 13 C 0.08 2.91 8.04 127.77 1.03 3.94 16 14 C 0.26 14.24 2.63 44.25 0.12 14.36 16 15 H 0.01 0.58 6.91 -2.39 -0.02 0.57 16 16 C -0.13 -6.52 8.97 71.98 0.65 -5.88 16 17 C -0.54 -30.00 7.96 25.60 0.20 -29.80 16 18 H 0.06 3.18 7.40 -2.91 -0.02 3.16 16 19 C 0.02 0.90 5.30 84.66 0.45 1.35 16 20 N -0.92 -53.66 11.32 21.45 0.24 -53.42 16 21 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 2.05 5.88 -2.39 -0.01 2.03 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 2.34 8.06 -2.39 -0.02 2.33 16 31 H 0.03 1.33 6.99 -2.39 -0.02 1.32 16 32 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 33 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.13 3.26 6.44 -2.91 -0.02 3.24 16 36 H 0.07 1.99 7.17 -2.39 -0.02 1.97 16 37 H 0.07 2.56 7.08 -2.39 -0.02 2.54 16 38 H 0.08 2.31 6.24 -2.39 -0.01 2.30 16 39 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 42 H 0.26 14.62 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -71.20 333.93 5.58 -65.61 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.99 Total: 17.60 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 4.65 Total: -15.65 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.04 Total: -82.55 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.05 Total: -30.81 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -71.20 5.58 -65.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350037491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.332 kcal (2) G-P(sol) polarization free energy of solvation -71.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds