Wall clock time and date at job start Mon Mar 30 2020 02:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47342 * 2 1 4 4 C 1.52996 * 109.47036 * 177.78281 * 3 2 1 5 5 C 1.52998 * 109.47034 * 185.00528 * 4 3 2 6 6 N 1.46497 * 109.47505 * 297.78860 * 3 2 1 7 7 C 1.34779 * 120.00021 * 93.61582 * 6 3 2 8 8 O 1.21281 * 120.00120 * 4.44496 * 7 6 3 9 9 C 1.50703 * 119.99539 * 184.43858 * 7 6 3 10 10 H 1.08999 * 109.47324 * 305.99675 * 9 7 6 11 11 C 1.50699 * 109.46978 * 66.00132 * 9 7 6 12 12 H 1.07998 * 120.00555 * 60.61314 * 11 9 7 13 13 C 1.37877 * 119.99614 * 240.60960 * 11 9 7 14 14 N 1.31514 * 120.00008 * 174.74690 * 13 11 9 15 15 Si 1.86798 * 120.00278 * 354.75006 * 13 11 9 16 16 H 1.48507 * 109.47252 * 85.16438 * 15 13 11 17 17 H 1.48498 * 109.47247 * 205.16115 * 15 13 11 18 18 H 1.48493 * 109.47124 * 325.16643 * 15 13 11 19 19 C 1.50707 * 109.46862 * 185.99784 * 9 7 6 20 20 C 1.38235 * 119.99663 * 291.81299 * 19 9 7 21 21 C 1.38237 * 119.99302 * 179.78851 * 20 19 9 22 22 C 1.38228 * 120.00475 * 0.44187 * 21 20 19 23 23 C 1.38236 * 119.99791 * 359.81100 * 22 21 20 24 24 C 1.38231 * 119.99930 * 112.08627 * 19 9 7 25 25 H 1.09003 * 109.47098 * 304.88509 * 1 2 3 26 26 H 1.09005 * 109.47098 * 64.87790 * 1 2 3 27 27 H 1.08993 * 109.47468 * 184.88329 * 1 2 3 28 28 H 1.09004 * 109.46969 * 240.00804 * 2 1 3 29 29 H 1.09001 * 109.47285 * 120.00651 * 2 1 3 30 30 H 1.09004 * 109.46627 * 57.78813 * 3 2 1 31 31 H 1.09000 * 109.47170 * 305.00191 * 4 3 2 32 32 H 1.08995 * 109.47253 * 65.00508 * 4 3 2 33 33 H 1.08999 * 109.47299 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47076 * 300.00360 * 5 4 3 35 35 H 1.08995 * 109.47627 * 60.00031 * 5 4 3 36 36 H 0.97001 * 119.99349 * 273.62588 * 6 3 2 37 37 H 0.97006 * 120.00229 * 179.97438 * 14 13 11 38 38 H 1.07998 * 120.00367 * 359.97438 * 20 19 9 39 39 H 1.08006 * 119.99486 * 180.27387 * 21 20 19 40 40 H 1.07995 * 120.00168 * 179.83993 * 22 21 20 41 41 H 1.08000 * 119.99928 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.00027 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5690 1.4428 0.0558 5 6 4.0744 2.8814 0.1816 6 7 1.5958 2.1176 -1.2219 7 6 0.4538 2.8334 -1.2191 8 8 -0.1640 2.9857 -0.1866 9 6 -0.0555 3.4445 -2.4991 10 1 0.7287 4.0544 -2.9477 11 6 -0.4497 2.3494 -3.4565 12 1 -1.2251 1.6483 -3.1853 13 6 0.1794 2.2428 -4.6787 14 7 -0.0903 1.2282 -5.4707 15 14 1.4149 3.5393 -5.2095 16 1 2.7519 3.2051 -4.6561 17 1 1.4881 3.5757 -6.6923 18 1 0.9872 4.8678 -4.7022 19 6 -1.2547 4.3074 -2.2015 20 6 -2.4380 3.7264 -1.7855 21 6 -3.5366 4.5183 -1.5083 22 6 -3.4547 5.8902 -1.6558 23 6 -2.2729 6.4707 -2.0769 24 6 -1.1729 5.6793 -2.3499 25 1 -0.3633 0.5878 0.8430 26 1 -0.3633 0.4363 -0.9305 27 1 -0.3634 -1.0238 0.0875 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6446 1.9676 0.8695 31 1 3.9012 0.8643 0.9178 32 1 3.9659 0.9967 -0.8560 33 1 5.1637 2.8816 0.2219 34 1 3.7422 3.4599 -0.6803 35 1 3.6776 3.3276 1.0934 36 1 2.1236 2.0494 -2.0329 37 1 0.3521 1.1533 -6.3308 38 1 -2.5033 2.6541 -1.6742 39 1 -4.4599 4.0647 -1.1790 40 1 -4.3138 6.5086 -1.4417 41 1 -2.2087 7.5427 -2.1918 42 1 -0.2496 6.1328 -2.6788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351640737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:51 Heat of formation + Delta-G solvation = -38.273147 kcal Electronic energy + Delta-G solvation = -22118.197036 eV Core-core repulsion = 19062.063619 eV Total energy + Delta-G solvation = -3056.133417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.47013 -38.14284 -36.01548 -33.61877 -31.79832 -31.65903 -31.32741 -30.12575 -27.81676 -25.95528 -23.60220 -21.85363 -21.71554 -21.41927 -20.13175 -19.28502 -17.18325 -16.24951 -16.18182 -15.60115 -14.77241 -14.54328 -14.29446 -13.78525 -13.69104 -13.55106 -12.99705 -12.89309 -12.77634 -12.62289 -12.47327 -12.05672 -11.99108 -11.76901 -11.32430 -11.14738 -11.09798 -10.95465 -10.69124 -10.50846 -10.43812 -10.36037 -10.12561 -9.99705 -9.45850 -9.01115 -8.65515 -8.23547 -8.12730 -7.80107 -6.31860 -4.33738 2.16561 2.22539 3.07336 3.20290 3.21483 3.68816 4.06879 4.17417 4.65564 4.91068 5.02986 5.24036 5.27390 5.55970 5.58673 5.59825 5.69361 5.70872 5.74114 5.88543 5.96732 6.02723 6.07520 6.12176 6.21620 6.27928 6.32619 6.37310 6.40767 6.42448 6.43230 6.67711 6.75980 6.86876 6.93906 7.17994 7.24307 7.26081 7.34134 7.60306 7.80397 8.21990 8.40661 8.71461 9.23895 9.26546 10.79584 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.008022 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.592956 B = 3489.559669 C = 4335.625933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.141 3.859 4 C -0.131 4.131 5 C -0.150 4.150 6 N -0.722 5.722 7 C 0.531 3.469 8 O -0.562 6.562 9 C 0.025 3.975 10 H 0.063 0.937 11 C -0.503 4.503 12 H 0.084 0.916 13 C 0.082 3.918 14 N -0.881 5.881 15 Si 0.864 3.136 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.261 1.261 19 C -0.022 4.022 20 C -0.074 4.074 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.134 4.134 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.398 0.602 37 H 0.269 0.731 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.541 2.973 7.652 9.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.036 3.964 4 C -0.169 4.169 5 C -0.208 4.208 6 N -0.373 5.373 7 C 0.320 3.680 8 O -0.441 6.441 9 C 0.004 3.996 10 H 0.081 0.919 11 C -0.540 4.540 12 H 0.102 0.898 13 C -0.123 4.123 14 N -0.517 5.517 15 Si 0.691 3.309 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.186 1.186 19 C -0.022 4.022 20 C -0.093 4.093 21 C -0.147 4.147 22 C -0.161 4.161 23 C -0.147 4.147 24 C -0.152 4.152 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.232 0.768 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.132 2.966 8.194 9.644 hybrid contribution 0.906 0.477 -0.987 1.422 sum 5.038 3.443 7.207 9.443 Atomic orbital electron populations 1.21719 0.95052 1.00291 1.03393 1.21902 0.97259 0.96443 1.01297 1.20960 0.92828 0.92883 0.89721 1.21825 0.95247 0.97563 1.02312 1.21742 1.00072 0.96713 1.02248 1.45888 1.25711 1.52822 1.12913 1.21431 0.78960 0.76806 0.90781 1.90568 1.57280 1.61828 1.34386 1.18451 0.92989 0.95638 0.92563 0.91918 1.20570 1.22409 1.11775 0.99280 0.89846 1.25050 0.96093 0.94972 0.96160 1.69859 1.42378 1.28798 1.10647 0.87032 0.81882 0.83332 0.78661 1.19649 1.20926 1.18631 1.19882 0.95977 0.92640 0.93743 1.20868 0.92021 0.99750 0.96619 1.21028 0.98359 0.93856 1.01504 1.20857 0.97468 0.94950 1.02860 1.20878 0.93670 0.98719 1.01452 1.20982 0.98289 0.93645 1.02266 0.92695 0.91388 0.93981 0.91935 0.92261 0.89424 0.91142 0.91623 0.93106 0.92394 0.92818 0.76803 0.92125 0.86479 0.87176 0.87380 0.87304 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.73 37.16 0.32 -2.25 16 2 C -0.13 -1.97 5.63 -26.73 -0.15 -2.12 16 3 C 0.14 2.19 2.27 -67.93 -0.15 2.04 16 4 C -0.13 -1.62 5.52 -26.73 -0.15 -1.77 16 5 C -0.15 -1.83 9.80 37.16 0.36 -1.47 16 6 N -0.72 -13.21 4.21 -53.80 -0.23 -13.43 16 7 C 0.53 11.33 5.52 -10.98 -0.06 11.27 16 8 O -0.56 -12.94 13.90 5.56 0.08 -12.86 16 9 C 0.03 0.57 2.26 -94.07 -0.21 0.36 16 10 H 0.06 1.38 4.44 -51.93 -0.23 1.15 16 11 C -0.50 -12.79 8.26 -34.44 -0.28 -13.08 16 12 H 0.08 2.36 7.52 -52.49 -0.39 1.97 16 13 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.88 -24.52 13.96 55.43 0.77 -23.75 16 15 Si 0.86 19.20 27.02 -169.99 -4.59 14.61 16 16 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.26 -5.67 6.68 56.52 0.38 -5.29 16 19 C -0.02 -0.48 4.33 -104.62 -0.45 -0.93 16 20 C -0.07 -1.61 8.28 -39.58 -0.33 -1.94 16 21 C -0.13 -2.42 10.05 -39.59 -0.40 -2.81 16 22 C -0.14 -2.47 10.05 -39.59 -0.40 -2.87 16 23 C -0.13 -2.29 10.05 -39.58 -0.40 -2.68 16 24 C -0.13 -2.68 9.67 -39.59 -0.38 -3.07 16 25 H 0.05 0.99 7.87 -51.93 -0.41 0.58 16 26 H 0.07 1.42 6.83 -51.93 -0.35 1.06 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.49 7.26 -51.93 -0.38 1.11 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.40 7.16 8.69 -40.82 -0.35 6.80 16 37 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.12 2.63 7.44 -52.49 -0.39 2.24 16 39 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.11 2.02 7.96 -52.49 -0.42 1.60 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -28.47 341.11 -8.32 -36.79 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -6.72 Total: 12.80 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -2.78 Total: -19.30 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.55 Total: -37.18 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.59 Total: 14.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.47 -8.32 -36.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351640737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.480 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds