Wall clock time and date at job start Mon Mar 30 2020 02:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47342 * 2 1 4 4 C 1.52996 * 109.47036 * 177.78281 * 3 2 1 5 5 C 1.52998 * 109.47034 * 185.00528 * 4 3 2 6 6 N 1.46497 * 109.47505 * 297.78860 * 3 2 1 7 7 C 1.34779 * 120.00021 * 93.61582 * 6 3 2 8 8 O 1.21281 * 120.00120 * 4.44496 * 7 6 3 9 9 C 1.50703 * 119.99539 * 184.43858 * 7 6 3 10 10 H 1.08999 * 109.47324 * 305.99675 * 9 7 6 11 11 C 1.50699 * 109.46978 * 66.00132 * 9 7 6 12 12 H 1.07998 * 120.00555 * 60.61314 * 11 9 7 13 13 C 1.37877 * 119.99614 * 240.60960 * 11 9 7 14 14 N 1.31514 * 120.00008 * 174.74690 * 13 11 9 15 15 Si 1.86798 * 120.00278 * 354.75006 * 13 11 9 16 16 H 1.48507 * 109.47252 * 85.16438 * 15 13 11 17 17 H 1.48498 * 109.47247 * 205.16115 * 15 13 11 18 18 H 1.48493 * 109.47124 * 325.16643 * 15 13 11 19 19 C 1.50707 * 109.46862 * 185.99784 * 9 7 6 20 20 C 1.38235 * 119.99663 * 291.81299 * 19 9 7 21 21 C 1.38237 * 119.99302 * 179.78851 * 20 19 9 22 22 C 1.38228 * 120.00475 * 0.44187 * 21 20 19 23 23 C 1.38236 * 119.99791 * 359.81100 * 22 21 20 24 24 C 1.38231 * 119.99930 * 112.08627 * 19 9 7 25 25 H 1.09003 * 109.47098 * 304.88509 * 1 2 3 26 26 H 1.09005 * 109.47098 * 64.87790 * 1 2 3 27 27 H 1.08993 * 109.47468 * 184.88329 * 1 2 3 28 28 H 1.09004 * 109.46969 * 240.00804 * 2 1 3 29 29 H 1.09001 * 109.47285 * 120.00651 * 2 1 3 30 30 H 1.09004 * 109.46627 * 57.78813 * 3 2 1 31 31 H 1.09000 * 109.47170 * 305.00191 * 4 3 2 32 32 H 1.08995 * 109.47253 * 65.00508 * 4 3 2 33 33 H 1.08999 * 109.47299 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47076 * 300.00360 * 5 4 3 35 35 H 1.08995 * 109.47627 * 60.00031 * 5 4 3 36 36 H 0.97001 * 119.99349 * 273.62588 * 6 3 2 37 37 H 0.97006 * 120.00229 * 179.97438 * 14 13 11 38 38 H 1.07998 * 120.00367 * 359.97438 * 20 19 9 39 39 H 1.08006 * 119.99486 * 180.27387 * 21 20 19 40 40 H 1.07995 * 120.00168 * 179.83993 * 22 21 20 41 41 H 1.08000 * 119.99928 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.00027 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5690 1.4428 0.0558 5 6 4.0744 2.8814 0.1816 6 7 1.5958 2.1176 -1.2219 7 6 0.4538 2.8334 -1.2191 8 8 -0.1640 2.9857 -0.1866 9 6 -0.0555 3.4445 -2.4991 10 1 0.7287 4.0544 -2.9477 11 6 -0.4497 2.3494 -3.4565 12 1 -1.2251 1.6483 -3.1853 13 6 0.1794 2.2428 -4.6787 14 7 -0.0903 1.2282 -5.4707 15 14 1.4149 3.5393 -5.2095 16 1 2.7519 3.2051 -4.6561 17 1 1.4881 3.5757 -6.6923 18 1 0.9872 4.8678 -4.7022 19 6 -1.2547 4.3074 -2.2015 20 6 -2.4380 3.7264 -1.7855 21 6 -3.5366 4.5183 -1.5083 22 6 -3.4547 5.8902 -1.6558 23 6 -2.2729 6.4707 -2.0769 24 6 -1.1729 5.6793 -2.3499 25 1 -0.3633 0.5878 0.8430 26 1 -0.3633 0.4363 -0.9305 27 1 -0.3634 -1.0238 0.0875 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6446 1.9676 0.8695 31 1 3.9012 0.8643 0.9178 32 1 3.9659 0.9967 -0.8560 33 1 5.1637 2.8816 0.2219 34 1 3.7422 3.4599 -0.6803 35 1 3.6776 3.3276 1.0934 36 1 2.1236 2.0494 -2.0329 37 1 0.3521 1.1533 -6.3308 38 1 -2.5033 2.6541 -1.6742 39 1 -4.4599 4.0647 -1.1790 40 1 -4.3138 6.5086 -1.4417 41 1 -2.2087 7.5427 -2.1918 42 1 -0.2496 6.1328 -2.6788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351640737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:51 Heat of formation + Delta-G solvation = -54.131510 kcal Electronic energy + Delta-G solvation = -22118.884706 eV Core-core repulsion = 19062.063619 eV Total energy + Delta-G solvation = -3056.821087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.07210 -39.62020 -37.43316 -35.48645 -33.44497 -32.95548 -32.84682 -31.62684 -29.47717 -27.27983 -25.44725 -23.37256 -22.92665 -22.83165 -21.49723 -20.91815 -19.12902 -17.91067 -17.65446 -17.05730 -16.38722 -16.03264 -15.86074 -15.33662 -14.91860 -14.80256 -14.76489 -14.45229 -14.34025 -14.08633 -13.76383 -13.68245 -13.42726 -13.19484 -12.87347 -12.75498 -12.51499 -12.16907 -12.03149 -11.91903 -11.86273 -11.75782 -11.66844 -11.57335 -11.34052 -10.87620 -10.46540 -9.74686 -9.64036 -9.35909 -8.33365 -6.40299 0.65000 0.71229 1.31504 1.38312 1.45891 1.98627 2.29325 2.58953 3.01670 3.17457 3.75223 4.06619 4.12741 4.18182 4.22814 4.30118 4.36128 4.40107 4.43358 4.51838 4.55481 4.57219 4.76907 4.84656 4.88921 4.93167 5.03064 5.05526 5.10257 5.18266 5.20583 5.31014 5.33151 5.40709 5.41858 5.45244 5.70329 5.74311 5.85972 5.95843 6.22316 6.32673 6.61651 6.80577 7.22850 7.59426 8.81878 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.008022 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.592956 B = 3489.559669 C = 4335.625933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.138 3.862 4 C -0.123 4.123 5 C -0.150 4.150 6 N -0.715 5.715 7 C 0.531 3.469 8 O -0.584 6.584 9 C 0.027 3.973 10 H 0.070 0.930 11 C -0.496 4.496 12 H 0.033 0.967 13 C 0.033 3.967 14 N -0.931 5.931 15 Si 0.922 3.078 16 H -0.243 1.243 17 H -0.287 1.287 18 H -0.250 1.250 19 C -0.054 4.054 20 C -0.104 4.104 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.149 4.149 25 H 0.043 0.957 26 H 0.023 0.977 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.049 0.951 36 H 0.400 0.600 37 H 0.270 0.730 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 5.039 8.574 11.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.033 3.967 4 C -0.161 4.161 5 C -0.207 4.207 6 N -0.365 5.365 7 C 0.319 3.681 8 O -0.465 6.465 9 C 0.005 3.995 10 H 0.088 0.912 11 C -0.534 4.534 12 H 0.052 0.948 13 C -0.167 4.167 14 N -0.568 5.568 15 Si 0.745 3.255 16 H -0.167 1.167 17 H -0.213 1.213 18 H -0.174 1.174 19 C -0.055 4.055 20 C -0.123 4.123 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.140 4.140 24 C -0.167 4.167 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.234 0.766 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.150 0.850 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.695 5.023 9.141 11.883 hybrid contribution 0.288 -0.198 -1.192 1.242 sum 5.982 4.825 7.948 11.057 Atomic orbital electron populations 1.21638 0.97297 1.00519 1.00445 1.21908 0.95060 0.96563 1.02917 1.21182 0.95379 0.92427 0.87679 1.21801 0.92092 0.98294 1.03901 1.21743 1.01531 0.96181 1.01291 1.45889 1.24617 1.51933 1.14071 1.21171 0.79649 0.77179 0.90056 1.90539 1.58139 1.62873 1.34924 1.18390 0.93746 0.94908 0.92437 0.91170 1.20455 1.20942 1.11729 1.00239 0.94829 1.25803 0.98123 0.96898 0.95850 1.70006 1.44404 1.31119 1.11313 0.86088 0.80587 0.80867 0.77937 1.16664 1.21311 1.17397 1.19973 0.95749 0.93960 0.95779 1.20809 0.93705 0.98720 0.99044 1.21337 0.98155 0.94868 1.00818 1.21340 0.98768 0.94378 1.00855 1.21354 0.92704 1.00561 0.99425 1.21245 0.99997 0.92836 1.02629 0.93768 0.95819 0.92451 0.91979 0.88755 0.90942 0.88428 0.90901 0.90815 0.94051 0.93201 0.76587 0.92045 0.89619 0.84972 0.83212 0.83313 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.73 71.98 0.63 -4.51 16 2 C -0.13 -3.71 5.63 30.59 0.17 -3.54 16 3 C 0.14 4.18 2.27 44.99 0.10 4.28 16 4 C -0.12 -2.72 5.52 30.59 0.17 -2.55 16 5 C -0.15 -3.31 9.80 71.98 0.71 -2.60 16 6 N -0.72 -26.52 4.21 -442.53 -1.86 -28.38 16 7 C 0.53 23.51 5.52 87.66 0.48 24.00 16 8 O -0.58 -28.12 13.90 -3.03 -0.04 -28.16 16 9 C 0.03 1.24 2.26 -13.03 -0.03 1.22 16 10 H 0.07 3.09 4.44 -2.39 -0.01 3.08 16 11 C -0.50 -26.75 8.26 25.60 0.21 -26.54 16 12 H 0.03 2.09 7.52 -2.91 -0.02 2.07 16 13 C 0.03 1.78 5.47 84.65 0.46 2.24 16 14 N -0.93 -54.07 13.96 21.45 0.30 -53.77 16 15 Si 0.92 39.41 27.02 68.60 1.85 41.27 16 16 H -0.24 -9.24 7.11 99.48 0.71 -8.53 16 17 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.25 -10.14 6.68 99.48 0.66 -9.48 16 19 C -0.05 -2.44 4.33 -19.86 -0.09 -2.53 16 20 C -0.10 -4.73 8.28 22.27 0.18 -4.55 16 21 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 22 C -0.14 -4.27 10.05 22.27 0.22 -4.05 16 23 C -0.12 -3.96 10.05 22.27 0.22 -3.73 16 24 C -0.15 -5.79 9.67 22.27 0.22 -5.58 16 25 H 0.04 1.66 7.87 -2.39 -0.02 1.64 16 26 H 0.02 1.04 6.83 -2.38 -0.02 1.02 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 30 H 0.07 2.45 7.26 -2.38 -0.02 2.44 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.04 1.04 7.75 -2.39 -0.02 1.02 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.40 14.38 8.69 -92.71 -0.81 13.58 16 37 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 38 H 0.09 4.28 7.44 -2.91 -0.02 4.26 16 39 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 40 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 42 H 0.12 4.29 7.96 -2.91 -0.02 4.26 16 Total: -1.00 -66.45 341.11 4.29 -62.16 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: 0.15 Total: 40.05 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 3.89 Total: -33.16 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -1.56 Total: -82.16 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.04 Total: -28.16 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.85 Total: 41.27 kcal Total: -66.45 4.29 -62.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351640737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.028 kcal (2) G-P(sol) polarization free energy of solvation -66.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds