Wall clock time and date at job start Mon Mar 30 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 C 1.53004 * 109.46891 * 175.00129 * 3 2 1 5 5 C 1.53005 * 109.46909 * 185.00242 * 4 3 2 6 6 N 1.46499 * 109.47125 * 294.99967 * 3 2 1 7 7 C 1.34770 * 120.00125 * 155.00193 * 6 3 2 8 8 O 1.21290 * 120.00129 * 359.97438 * 7 6 3 9 9 C 1.50703 * 120.00433 * 180.02562 * 7 6 3 10 10 H 1.09005 * 109.46964 * 59.99711 * 9 7 6 11 11 C 1.50705 * 109.46837 * 300.00067 * 9 7 6 12 12 H 1.07998 * 119.99560 * 124.04167 * 11 9 7 13 13 C 1.37881 * 119.99654 * 303.76426 * 11 9 7 14 14 N 1.31514 * 120.00030 * 351.98134 * 13 11 9 15 15 Si 1.86799 * 119.99653 * 171.98635 * 13 11 9 16 16 H 1.48503 * 109.47007 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47406 * 119.99655 * 15 13 11 18 18 H 1.48500 * 109.46841 * 240.00024 * 15 13 11 19 19 C 1.50700 * 109.47298 * 179.97438 * 9 7 6 20 20 C 1.38235 * 120.00077 * 313.66948 * 19 9 7 21 21 C 1.38235 * 119.99766 * 179.81245 * 20 19 9 22 22 C 1.38233 * 119.99877 * 0.39582 * 21 20 19 23 23 C 1.38232 * 120.00459 * 359.85527 * 22 21 20 24 24 C 1.38234 * 119.99786 * 359.95864 * 23 22 21 25 25 H 1.08996 * 109.46841 * 60.00311 * 1 2 3 26 26 H 1.09002 * 109.47330 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46797 * 299.99822 * 1 2 3 28 28 H 1.09005 * 109.47138 * 239.99677 * 2 1 3 29 29 H 1.09004 * 109.47207 * 120.00235 * 2 1 3 30 30 H 1.09004 * 109.47325 * 55.00147 * 3 2 1 31 31 H 1.08999 * 109.46923 * 304.99918 * 4 3 2 32 32 H 1.08990 * 109.47441 * 64.99942 * 4 3 2 33 33 H 1.09000 * 109.46576 * 299.99788 * 5 4 3 34 34 H 1.08999 * 109.47258 * 59.99521 * 5 4 3 35 35 H 1.08993 * 109.47221 * 179.97438 * 5 4 3 36 36 H 0.96996 * 119.99914 * 334.99798 * 6 3 2 37 37 H 0.96999 * 119.99500 * 179.97438 * 14 13 11 38 38 H 1.07999 * 120.00104 * 359.97438 * 20 19 9 39 39 H 1.07999 * 119.99606 * 180.22759 * 21 20 19 40 40 H 1.08005 * 119.99984 * 179.83857 * 22 21 20 41 41 H 1.07997 * 120.00613 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99930 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4442 0.1257 5 6 4.0646 2.8849 0.2512 6 7 1.6525 2.0974 -1.2518 7 6 1.5257 3.4383 -1.2996 8 8 1.7320 4.1028 -0.3061 9 6 1.1265 4.1121 -2.5871 10 1 0.1501 3.7439 -2.9024 11 6 2.1472 3.8047 -3.6524 12 1 1.8374 3.3510 -4.5822 13 6 3.4757 4.1080 -3.4422 14 7 3.8318 4.8053 -2.3855 15 14 4.7697 3.5284 -4.6583 16 1 4.1149 2.7680 -5.7530 17 1 5.4772 4.7040 -5.2262 18 1 5.7457 2.6519 -3.9624 19 6 1.0558 5.6022 -2.3734 20 6 0.4078 6.1113 -1.2636 21 6 0.3463 7.4780 -1.0656 22 6 0.9258 8.3359 -1.9817 23 6 1.5693 7.8270 -3.0943 24 6 1.6341 6.4601 -3.2903 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6054 1.9815 0.8418 31 1 3.8571 0.8799 1.0113 32 1 4.0030 0.9835 -0.7596 33 1 3.7723 3.4492 -0.6344 34 1 3.6264 3.3457 1.1365 35 1 5.1508 2.8862 0.3412 36 1 1.4872 1.5660 -2.0462 37 1 4.7665 5.0183 -2.2375 38 1 -0.0482 5.4412 -0.5498 39 1 -0.1567 7.8756 -0.1966 40 1 0.8755 9.4038 -1.8284 41 1 2.0216 8.4971 -3.8102 42 1 2.1372 6.0625 -4.1593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351640738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:55 Heat of formation + Delta-G solvation = -28.079635 kcal Electronic energy + Delta-G solvation = -22645.853302 eV Core-core repulsion = 19590.161909 eV Total energy + Delta-G solvation = -3055.691393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.18542 -37.74408 -35.66049 -33.58331 -31.58100 -31.34559 -30.60918 -29.59252 -27.25829 -25.71781 -23.80200 -21.49120 -21.28419 -20.93694 -19.85866 -19.18397 -16.78928 -15.81673 -15.65362 -15.05825 -14.89605 -14.27269 -13.96122 -13.61544 -13.53907 -13.29222 -12.83138 -12.53643 -12.35366 -12.13879 -12.02055 -11.83074 -11.69828 -11.22494 -11.13185 -11.00756 -10.79982 -10.68980 -10.56334 -10.31897 -10.14843 -10.02695 -9.97312 -9.57792 -9.32640 -8.59143 -8.24373 -7.84521 -7.60463 -7.32965 -6.12147 -4.27425 2.62052 2.69311 3.19436 3.30797 3.31143 4.15776 4.29366 4.44646 5.06341 5.08817 5.13240 5.33699 5.40043 5.81386 5.87500 5.91295 5.93586 6.02907 6.06395 6.11903 6.11927 6.25507 6.36085 6.43798 6.50268 6.60650 6.68193 6.74623 6.78002 6.86730 6.95945 7.04645 7.20339 7.28670 7.59275 7.64247 7.66386 7.72802 7.80295 7.88921 8.23555 8.33421 8.65203 8.86013 9.37708 9.74676 10.85984 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.008503 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.813913 B = 3292.351124 C = 4344.806630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.149 3.851 4 C -0.127 4.127 5 C -0.167 4.167 6 N -0.729 5.729 7 C 0.546 3.454 8 O -0.543 6.543 9 C 0.055 3.945 10 H 0.054 0.946 11 C -0.537 4.537 12 H 0.066 0.934 13 C 0.076 3.924 14 N -0.836 5.836 15 Si 0.882 3.118 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.012 4.012 20 C -0.100 4.100 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.149 4.149 24 C -0.057 4.057 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.122 0.878 34 H 0.044 0.956 35 H 0.022 0.978 36 H 0.394 0.606 37 H 0.264 0.736 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 -5.106 1.746 6.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.044 3.956 4 C -0.166 4.166 5 C -0.224 4.224 6 N -0.382 5.382 7 C 0.335 3.665 8 O -0.420 6.420 9 C 0.033 3.967 10 H 0.072 0.928 11 C -0.574 4.574 12 H 0.084 0.916 13 C -0.132 4.132 14 N -0.469 5.469 15 Si 0.709 3.291 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.013 4.013 20 C -0.118 4.118 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.167 4.167 24 C -0.075 4.075 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.227 0.773 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.089 -4.518 2.590 6.621 hybrid contribution 1.214 -0.554 -0.781 1.546 sum -2.875 -5.071 1.809 6.104 Atomic orbital electron populations 1.21738 0.95715 1.00831 1.02337 1.21809 0.96205 0.96685 1.02118 1.20804 0.93993 0.91739 0.89079 1.21906 0.95927 0.98734 1.00047 1.22187 0.97689 0.96136 1.06422 1.45889 1.72781 1.07790 1.11736 1.20980 0.74447 0.80786 0.90247 1.90561 1.50198 1.63665 1.37542 1.17909 0.97007 0.89443 0.92309 0.92760 1.20720 0.91118 1.43856 1.01731 0.91594 1.25002 0.98582 0.94100 0.95488 1.70051 1.17307 1.33499 1.26029 0.86683 0.82058 0.78843 0.81477 1.19624 1.20967 1.20922 1.19766 0.93007 0.95855 0.92650 1.20967 0.99605 0.94171 0.97080 1.20793 1.02613 0.94043 0.98969 1.20744 1.01453 0.97925 0.96209 1.20959 1.01763 0.95894 0.98116 1.21081 0.95411 0.91311 0.99713 0.92194 0.93300 0.92958 0.91770 0.91490 0.90536 0.93426 0.92806 0.86014 0.93724 0.95860 0.77283 0.92601 0.87553 0.88314 0.88421 0.88253 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.80 37.16 0.36 -1.42 16 2 C -0.13 -1.68 5.47 -26.73 -0.15 -1.83 16 3 C 0.15 2.52 2.26 -67.93 -0.15 2.37 16 4 C -0.13 -2.28 5.61 -26.73 -0.15 -2.43 16 5 C -0.17 -3.61 8.52 37.16 0.32 -3.29 16 6 N -0.73 -13.72 4.38 -53.80 -0.24 -13.96 16 7 C 0.55 12.19 4.33 -10.99 -0.05 12.14 16 8 O -0.54 -13.55 11.13 5.55 0.06 -13.49 16 9 C 0.05 1.24 2.78 -94.07 -0.26 0.98 16 10 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 11 C -0.54 -12.65 7.11 -34.44 -0.24 -12.90 16 12 H 0.07 1.53 7.83 -52.49 -0.41 1.12 16 13 C 0.08 1.84 4.08 -17.82 -0.07 1.77 16 14 N -0.84 -21.63 8.72 55.43 0.48 -21.15 16 15 Si 0.88 19.50 29.55 -169.99 -5.02 14.47 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.01 -0.28 4.44 -104.62 -0.46 -0.74 16 20 C -0.10 -2.25 8.21 -39.58 -0.32 -2.58 16 21 C -0.15 -3.01 10.05 -39.58 -0.40 -3.41 16 22 C -0.15 -2.90 10.05 -39.59 -0.40 -3.30 16 23 C -0.15 -3.13 10.05 -39.58 -0.40 -3.53 16 24 C -0.06 -1.32 7.96 -39.58 -0.32 -1.64 16 25 H 0.06 0.76 7.75 -51.93 -0.40 0.36 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.12 2.97 3.40 -51.93 -0.18 2.79 16 34 H 0.04 0.99 7.85 -51.93 -0.41 0.58 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.39 6.84 8.49 -40.82 -0.35 6.50 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.11 2.38 6.94 -52.49 -0.36 2.01 16 39 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.13 3.02 6.07 -52.48 -0.32 2.70 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -27.16 329.31 -9.05 -36.21 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -6.61 Total: 12.75 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -2.69 Total: -19.80 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.25 Total: -35.10 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.06 Total: -13.49 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.16 -9.05 -36.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351640738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.126 kcal (2) G-P(sol) polarization free energy of solvation -27.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds