Wall clock time and date at job start Mon Mar 30 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 C 1.53004 * 109.46891 * 175.00129 * 3 2 1 5 5 C 1.53005 * 109.46909 * 185.00242 * 4 3 2 6 6 N 1.46499 * 109.47125 * 294.99967 * 3 2 1 7 7 C 1.34770 * 120.00125 * 155.00193 * 6 3 2 8 8 O 1.21290 * 120.00129 * 359.97438 * 7 6 3 9 9 C 1.50703 * 120.00433 * 180.02562 * 7 6 3 10 10 H 1.09005 * 109.46964 * 59.99711 * 9 7 6 11 11 C 1.50705 * 109.46837 * 300.00067 * 9 7 6 12 12 H 1.07998 * 119.99560 * 124.04167 * 11 9 7 13 13 C 1.37881 * 119.99654 * 303.76426 * 11 9 7 14 14 N 1.31514 * 120.00030 * 351.98134 * 13 11 9 15 15 Si 1.86799 * 119.99653 * 171.98635 * 13 11 9 16 16 H 1.48503 * 109.47007 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47406 * 119.99655 * 15 13 11 18 18 H 1.48500 * 109.46841 * 240.00024 * 15 13 11 19 19 C 1.50700 * 109.47298 * 179.97438 * 9 7 6 20 20 C 1.38235 * 120.00077 * 313.66948 * 19 9 7 21 21 C 1.38235 * 119.99766 * 179.81245 * 20 19 9 22 22 C 1.38233 * 119.99877 * 0.39582 * 21 20 19 23 23 C 1.38232 * 120.00459 * 359.85527 * 22 21 20 24 24 C 1.38234 * 119.99786 * 359.95864 * 23 22 21 25 25 H 1.08996 * 109.46841 * 60.00311 * 1 2 3 26 26 H 1.09002 * 109.47330 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46797 * 299.99822 * 1 2 3 28 28 H 1.09005 * 109.47138 * 239.99677 * 2 1 3 29 29 H 1.09004 * 109.47207 * 120.00235 * 2 1 3 30 30 H 1.09004 * 109.47325 * 55.00147 * 3 2 1 31 31 H 1.08999 * 109.46923 * 304.99918 * 4 3 2 32 32 H 1.08990 * 109.47441 * 64.99942 * 4 3 2 33 33 H 1.09000 * 109.46576 * 299.99788 * 5 4 3 34 34 H 1.08999 * 109.47258 * 59.99521 * 5 4 3 35 35 H 1.08993 * 109.47221 * 179.97438 * 5 4 3 36 36 H 0.96996 * 119.99914 * 334.99798 * 6 3 2 37 37 H 0.96999 * 119.99500 * 179.97438 * 14 13 11 38 38 H 1.07999 * 120.00104 * 359.97438 * 20 19 9 39 39 H 1.07999 * 119.99606 * 180.22759 * 21 20 19 40 40 H 1.08005 * 119.99984 * 179.83857 * 22 21 20 41 41 H 1.07997 * 120.00613 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99930 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4442 0.1257 5 6 4.0646 2.8849 0.2512 6 7 1.6525 2.0974 -1.2518 7 6 1.5257 3.4383 -1.2996 8 8 1.7320 4.1028 -0.3061 9 6 1.1265 4.1121 -2.5871 10 1 0.1501 3.7439 -2.9024 11 6 2.1472 3.8047 -3.6524 12 1 1.8374 3.3510 -4.5822 13 6 3.4757 4.1080 -3.4422 14 7 3.8318 4.8053 -2.3855 15 14 4.7697 3.5284 -4.6583 16 1 4.1149 2.7680 -5.7530 17 1 5.4772 4.7040 -5.2262 18 1 5.7457 2.6519 -3.9624 19 6 1.0558 5.6022 -2.3734 20 6 0.4078 6.1113 -1.2636 21 6 0.3463 7.4780 -1.0656 22 6 0.9258 8.3359 -1.9817 23 6 1.5693 7.8270 -3.0943 24 6 1.6341 6.4601 -3.2903 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6054 1.9815 0.8418 31 1 3.8571 0.8799 1.0113 32 1 4.0030 0.9835 -0.7596 33 1 3.7723 3.4492 -0.6344 34 1 3.6264 3.3457 1.1365 35 1 5.1508 2.8862 0.3412 36 1 1.4872 1.5660 -2.0462 37 1 4.7665 5.0183 -2.2375 38 1 -0.0482 5.4412 -0.5498 39 1 -0.1567 7.8756 -0.1966 40 1 0.8755 9.4038 -1.8284 41 1 2.0216 8.4971 -3.8102 42 1 2.1372 6.0625 -4.1593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351640738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:55 Heat of formation + Delta-G solvation = -41.375564 kcal Electronic energy + Delta-G solvation = -22646.429857 eV Core-core repulsion = 19590.161909 eV Total energy + Delta-G solvation = -3056.267948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.85136 -39.35068 -37.16336 -35.40521 -33.09536 -32.75016 -32.31919 -31.27793 -28.97254 -27.14151 -25.58122 -22.96393 -22.76604 -22.53224 -21.34841 -20.87002 -18.57231 -17.40717 -17.24197 -16.76085 -16.62989 -15.86000 -15.56809 -15.26968 -14.79166 -14.67751 -14.44674 -14.20773 -13.84697 -13.72364 -13.63016 -13.48332 -13.12567 -12.91672 -12.80186 -12.51372 -12.35363 -12.26516 -11.98687 -11.77448 -11.73428 -11.60605 -11.45309 -11.29246 -11.09057 -10.46359 -10.01375 -9.44352 -9.29729 -9.03215 -7.99682 -6.17673 0.94436 1.00266 1.40928 1.48763 1.54762 2.39982 2.53131 2.89420 3.24391 3.42600 3.84910 4.19231 4.26860 4.38895 4.39854 4.45615 4.54519 4.59392 4.66696 4.72603 4.78914 4.91932 5.01369 5.06536 5.09289 5.11904 5.16578 5.18667 5.23347 5.27914 5.44012 5.49794 5.52297 5.61380 5.74094 5.94838 5.98120 6.03418 6.08805 6.15710 6.50357 6.59568 6.82863 7.22178 7.48671 8.06497 8.95973 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.008503 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.813913 B = 3292.351124 C = 4344.806630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.149 3.851 4 C -0.122 4.122 5 C -0.169 4.169 6 N -0.720 5.720 7 C 0.547 3.453 8 O -0.574 6.574 9 C 0.046 3.954 10 H 0.063 0.937 11 C -0.531 4.531 12 H 0.067 0.933 13 C 0.047 3.953 14 N -0.856 5.856 15 Si 0.930 3.070 16 H -0.262 1.262 17 H -0.291 1.291 18 H -0.290 1.290 19 C -0.031 4.031 20 C -0.117 4.117 21 C -0.149 4.149 22 C -0.143 4.143 23 C -0.154 4.154 24 C -0.078 4.078 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.401 0.599 37 H 0.253 0.747 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.122 0.878 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.764 -5.956 1.726 7.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.044 3.956 4 C -0.161 4.161 5 C -0.226 4.226 6 N -0.372 5.372 7 C 0.336 3.664 8 O -0.453 6.453 9 C 0.025 3.975 10 H 0.081 0.919 11 C -0.569 4.569 12 H 0.085 0.915 13 C -0.158 4.158 14 N -0.490 5.490 15 Si 0.758 3.242 16 H -0.186 1.186 17 H -0.218 1.218 18 H -0.217 1.217 19 C -0.032 4.032 20 C -0.135 4.135 21 C -0.167 4.167 22 C -0.161 4.161 23 C -0.172 4.172 24 C -0.096 4.096 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.236 0.764 37 H 0.063 0.937 38 H 0.117 0.883 39 H 0.143 0.857 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.463 -5.407 2.545 7.459 hybrid contribution 1.290 -0.246 -0.763 1.519 sum -3.173 -5.653 1.783 6.724 Atomic orbital electron populations 1.21720 0.95012 1.02147 1.01535 1.21756 0.96723 0.93636 1.03681 1.20918 0.93429 0.93912 0.87302 1.21876 0.96393 0.96480 1.01330 1.22141 0.97686 0.98362 1.04455 1.45805 1.71683 1.06853 1.12877 1.20856 0.74205 0.81764 0.89577 1.90537 1.51697 1.64635 1.38414 1.18011 0.97231 0.89741 0.92566 0.91930 1.20841 0.91273 1.42985 1.01816 0.91458 1.25417 0.99829 0.94215 0.96328 1.70203 1.16546 1.34838 1.27429 0.85930 0.80159 0.77967 0.80181 1.18615 1.21784 1.21697 1.19901 0.93753 0.96218 0.93290 1.21028 1.00295 0.95238 0.96924 1.21150 1.02234 0.93382 0.99938 1.21123 1.00070 0.99727 0.95175 1.21264 1.01528 0.95384 0.99029 1.21051 0.96422 0.92532 0.99562 0.93273 0.90894 0.93556 0.90649 0.89388 0.92541 0.90597 0.92806 0.88358 0.95410 0.95817 0.76404 0.93705 0.88276 0.85662 0.84853 0.86018 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.80 71.98 0.71 -2.49 16 2 C -0.12 -2.78 5.47 30.59 0.17 -2.61 16 3 C 0.15 4.89 2.26 44.99 0.10 4.99 16 4 C -0.12 -4.21 5.61 30.60 0.17 -4.04 16 5 C -0.17 -7.37 8.52 71.98 0.61 -6.76 16 6 N -0.72 -26.86 4.38 -442.53 -1.94 -28.80 16 7 C 0.55 24.74 4.33 87.66 0.38 25.12 16 8 O -0.57 -29.35 11.13 -3.06 -0.03 -29.38 16 9 C 0.05 2.11 2.78 -13.03 -0.04 2.07 16 10 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 11 C -0.53 -25.15 7.11 25.60 0.18 -24.97 16 12 H 0.07 3.11 7.83 -2.91 -0.02 3.08 16 13 C 0.05 2.30 4.08 84.66 0.35 2.64 16 14 N -0.86 -45.15 8.72 21.45 0.19 -44.96 16 15 Si 0.93 40.14 29.55 68.60 2.03 42.17 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 17 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 19 C -0.03 -1.46 4.44 -19.86 -0.09 -1.55 16 20 C -0.12 -5.29 8.21 22.27 0.18 -5.11 16 21 C -0.15 -5.97 10.05 22.27 0.22 -5.75 16 22 C -0.14 -5.42 10.05 22.27 0.22 -5.20 16 23 C -0.15 -6.31 10.05 22.27 0.22 -6.09 16 24 C -0.08 -3.62 7.96 22.27 0.18 -3.44 16 25 H 0.05 1.16 7.75 -2.39 -0.02 1.15 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 2.10 7.58 -2.38 -0.02 2.08 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.10 4.87 3.40 -2.39 -0.01 4.86 16 34 H 0.03 1.24 7.85 -2.39 -0.02 1.22 16 35 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.40 13.61 8.49 -92.71 -0.79 12.82 16 37 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 38 H 0.10 4.54 6.94 -2.91 -0.02 4.52 16 39 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 40 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 41 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 42 H 0.11 5.38 6.07 -2.91 -0.02 5.36 16 Total: -1.00 -58.94 329.31 4.03 -54.91 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: 0.21 Total: 39.23 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 3.57 Total: -33.17 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -1.75 Total: -73.76 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.03 Total: -29.38 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -58.94 4.03 -54.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351640738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.536 kcal (2) G-P(sol) polarization free energy of solvation -58.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds