Wall clock time and date at job start Mon Mar 30 2020 02:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32561 * 119.99981 * 2 1 4 4 C 1.47813 * 119.99935 * 175.16746 * 3 2 1 5 5 C 1.39538 * 120.14350 * 317.44764 * 4 3 2 6 6 C 1.37973 * 119.85825 * 179.73956 * 5 4 3 7 7 C 1.38343 * 120.14138 * 0.51032 * 6 5 4 8 8 C 1.38347 * 120.28491 * 359.76327 * 7 6 5 9 9 C 1.37976 * 120.14515 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99605 * 179.97438 * 2 1 3 11 11 N 1.46889 * 109.47353 * 275.97375 * 10 2 1 12 12 C 1.46902 * 111.00268 * 66.04875 * 11 10 2 13 13 C 1.46903 * 111.00047 * 190.00412 * 11 10 2 14 14 C 1.53002 * 109.47214 * 170.00359 * 13 11 10 15 15 H 1.08998 * 109.47126 * 59.99833 * 14 13 11 16 16 O 1.42902 * 109.46994 * 299.99700 * 14 13 11 17 17 C 1.50698 * 109.47115 * 179.97438 * 14 13 11 18 18 H 1.08003 * 119.99994 * 359.97438 * 17 14 13 19 19 C 1.37873 * 120.00450 * 179.97438 * 17 14 13 20 20 N 1.31509 * 120.00485 * 179.97438 * 19 17 14 21 21 Si 1.86806 * 119.99762 * 359.97438 * 19 17 14 22 22 H 1.48506 * 109.46971 * 89.99921 * 21 19 17 23 23 H 1.48497 * 109.47204 * 210.00021 * 21 19 17 24 24 H 1.48502 * 109.46909 * 330.00013 * 21 19 17 25 25 H 1.09005 * 109.47023 * 90.00679 * 1 2 3 26 26 H 1.08996 * 109.47834 * 210.00383 * 1 2 3 27 27 H 1.09006 * 109.47314 * 330.00878 * 1 2 3 28 28 H 1.07994 * 120.00113 * 354.89018 * 3 2 1 29 29 H 1.08008 * 120.06766 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.92756 * 180.25459 * 6 5 4 31 31 H 1.08000 * 119.85805 * 179.73828 * 7 6 5 32 32 H 1.07999 * 119.92726 * 179.97438 * 8 7 6 33 33 H 1.07991 * 120.07464 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.46656 * 35.97847 * 10 2 1 35 35 H 1.09003 * 109.46550 * 155.97620 * 10 2 1 36 36 H 1.08998 * 109.47009 * 59.99546 * 12 11 10 37 37 H 1.09002 * 109.47330 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.47145 * 299.99953 * 12 11 10 39 39 H 1.09001 * 109.46922 * 289.99833 * 13 11 10 40 40 H 1.08998 * 109.47211 * 50.00244 * 13 11 10 41 41 H 0.96699 * 114.00052 * 300.00130 * 16 14 13 42 42 H 0.96999 * 120.00242 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1480 0.0000 4 6 3.6440 1.1503 0.1078 5 6 4.2819 0.2976 1.0095 6 6 5.6585 0.3007 1.1015 7 6 6.4057 1.1543 0.3097 8 6 5.7791 2.0062 -0.5822 9 6 4.4034 2.0091 -0.6877 10 6 2.2604 -1.3052 0.0006 11 7 2.3804 -1.8007 1.3782 12 6 1.0647 -2.1566 1.9262 13 6 3.3058 -2.9394 1.4493 14 6 3.5984 -3.2680 2.9147 15 1 2.6684 -3.5234 3.4225 16 8 4.1910 -2.1324 3.5483 17 6 4.5473 -4.4365 2.9877 18 1 4.9054 -4.8989 2.0797 19 6 4.9582 -4.9155 4.2135 20 7 5.7858 -5.9355 4.2772 21 14 4.3394 -4.1153 5.7840 22 1 3.0876 -4.7846 6.2205 23 1 5.3685 -4.2488 6.8463 24 1 4.0701 -2.6766 5.5336 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 1.6330 2.0814 -0.0833 29 1 3.6994 -0.3661 1.6314 30 1 6.1537 -0.3617 1.7961 31 1 7.4829 1.1560 0.3885 32 1 6.3680 2.6705 -1.1972 33 1 3.9154 2.6742 -1.3846 34 1 1.7217 -2.0359 -0.6028 35 1 3.2550 -1.1507 -0.4179 36 1 0.6142 -2.9364 1.3122 37 1 1.1826 -2.5208 2.9467 38 1 0.4210 -1.2769 1.9260 39 1 2.8538 -3.8056 0.9660 40 1 4.2358 -2.6841 0.9415 41 1 5.0240 -1.8486 3.1476 42 1 6.0752 -6.2722 5.1396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354711769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:24 Heat of formation + Delta-G solvation = 4.588912 kcal Electronic energy + Delta-G solvation = -21929.000007 eV Core-core repulsion = 18874.725229 eV Total energy + Delta-G solvation = -3054.274778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.41348 -37.77426 -35.98384 -34.03831 -32.22547 -30.95584 -30.62925 -28.78626 -27.65450 -26.20879 -25.53140 -22.46966 -22.07946 -21.61016 -20.05694 -18.15858 -17.32953 -16.59220 -15.53202 -15.21649 -15.13900 -14.76696 -14.69535 -14.23115 -13.79200 -13.60716 -13.40880 -13.09360 -12.98827 -12.78931 -12.60317 -12.46588 -12.12425 -11.64185 -11.57495 -11.29257 -11.08049 -10.90821 -10.76989 -10.67435 -10.56093 -10.30340 -9.89261 -9.38151 -9.00860 -8.61657 -8.59889 -8.26110 -8.01435 -7.75636 -6.12377 -4.23719 1.26786 1.72592 2.45403 3.39738 3.49897 3.77405 4.10839 4.45469 4.54755 4.80122 4.99006 5.15525 5.19834 5.22576 5.25380 5.45898 5.53245 5.56320 5.58986 5.71502 5.75965 5.76820 5.85422 5.86660 5.93477 6.02541 6.11137 6.23143 6.26456 6.35366 6.42882 6.54525 6.60975 6.74183 6.82464 6.97300 7.06545 7.24669 7.34627 7.38154 7.55693 7.67935 8.29721 8.84241 9.09538 9.52626 10.98241 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.006021 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.754953 B = 4649.472290 C = 5691.619809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C -0.116 4.116 4 C -0.064 4.064 5 C -0.108 4.108 6 C -0.123 4.123 7 C -0.123 4.123 8 C -0.135 4.135 9 C -0.118 4.118 10 C 0.079 3.921 11 N -0.524 5.524 12 C 0.016 3.984 13 C 0.034 3.966 14 C 0.202 3.798 15 H 0.054 0.946 16 O -0.569 6.569 17 C -0.565 4.565 18 H 0.070 0.930 19 C 0.085 3.915 20 N -0.894 5.894 21 Si 0.869 3.131 22 H -0.289 1.289 23 H -0.297 1.297 24 H -0.213 1.213 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.179 0.821 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.351 0.649 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 14.511 -9.562 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.105 4.105 3 C -0.135 4.135 4 C -0.064 4.064 5 C -0.125 4.125 6 C -0.141 4.141 7 C -0.141 4.141 8 C -0.153 4.153 9 C -0.136 4.136 10 C -0.048 4.048 11 N -0.247 5.247 12 C -0.132 4.132 13 C -0.093 4.093 14 C 0.144 3.856 15 H 0.071 0.929 16 O -0.374 6.374 17 C -0.603 4.603 18 H 0.089 0.911 19 C -0.120 4.120 20 N -0.531 5.531 21 Si 0.695 3.305 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.136 1.136 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.132 0.868 29 H 0.195 0.805 30 H 0.142 0.858 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.197 0.803 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.000 14.705 -8.797 18.510 hybrid contribution 0.044 -0.504 -0.185 0.539 sum -6.956 14.201 -8.982 18.186 Atomic orbital electron populations 1.21030 0.92223 1.02936 1.01777 1.21907 0.95104 0.94529 0.98914 1.21387 0.92174 0.97116 1.02857 1.19059 0.92857 0.97137 0.97326 1.22788 0.95194 0.97191 0.97375 1.21284 0.94507 0.98946 0.99370 1.21223 0.99631 0.96612 0.96682 1.20940 0.94539 1.00066 0.99785 1.21173 0.93851 0.99137 0.99455 1.21256 0.99859 0.93109 0.90562 1.62088 1.10382 1.34760 1.17472 1.22619 0.90425 0.99432 1.00741 1.22928 0.95148 0.89943 1.01257 1.19722 0.94174 0.84704 0.86986 0.92873 1.86689 1.40650 1.50395 1.59676 1.21506 1.29075 1.15149 0.94593 0.91139 1.24971 0.93512 0.93665 0.99830 1.69957 1.32634 1.24687 1.25805 0.87059 0.77933 0.84043 0.81418 1.21583 1.22340 1.13563 0.91823 0.90903 0.91807 0.86799 0.80464 0.85771 0.86718 0.86824 0.86829 0.94785 0.89852 0.96116 0.90796 0.91269 0.94827 0.91138 0.80269 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.37 36.00 0.34 -0.91 16 2 C -0.10 -1.31 5.09 -101.26 -0.52 -1.82 16 3 C -0.12 -1.47 9.36 -37.57 -0.35 -1.82 16 4 C -0.06 -0.89 4.97 -105.01 -0.52 -1.42 16 5 C -0.11 -1.66 7.62 -39.19 -0.30 -1.96 16 6 C -0.12 -1.81 10.03 -39.64 -0.40 -2.21 16 7 C -0.12 -1.62 10.04 -39.50 -0.40 -2.02 16 8 C -0.14 -1.66 10.03 -39.64 -0.40 -2.06 16 9 C -0.12 -1.49 9.79 -39.19 -0.38 -1.88 16 10 C 0.08 1.13 4.09 -4.98 -0.02 1.11 16 11 N -0.52 -8.45 2.30 -244.37 -0.56 -9.01 16 12 C 0.02 0.24 8.41 60.07 0.51 0.74 16 13 C 0.03 0.65 4.26 -3.82 -0.02 0.64 16 14 C 0.20 4.53 2.19 -27.88 -0.06 4.47 16 15 H 0.05 1.24 5.90 -51.93 -0.31 0.94 16 16 O -0.57 -12.48 9.72 -35.23 -0.34 -12.82 16 17 C -0.57 -15.34 9.34 -34.44 -0.32 -15.66 16 18 H 0.07 2.07 7.99 -52.48 -0.42 1.65 16 19 C 0.08 2.40 5.47 -17.82 -0.10 2.31 16 20 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 21 Si 0.87 21.61 26.99 -169.99 -4.59 17.02 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.21 -5.17 5.30 56.52 0.30 -4.87 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.74 5.52 -51.93 -0.29 0.46 16 27 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 28 H 0.11 1.23 8.05 -52.49 -0.42 0.81 16 29 H 0.18 2.99 4.22 -52.48 -0.22 2.77 16 30 H 0.12 1.77 7.70 -52.49 -0.40 1.36 16 31 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.08 1.27 5.71 -51.93 -0.30 0.97 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 1.23 6.30 -51.93 -0.33 0.90 16 38 H 0.07 0.91 5.21 -51.93 -0.27 0.64 16 39 H 0.03 0.65 8.12 -51.93 -0.42 0.23 16 40 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 41 H 0.35 7.01 8.68 45.56 0.40 7.40 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -30.25 328.84 -8.29 -38.53 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -5.58 Total: 10.10 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -2.94 Total: -22.48 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.21 Total: -35.31 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.34 Total: -12.82 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.59 Total: 17.02 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.25 -8.29 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354711769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.123 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds