Wall clock time and date at job start Mon Mar 30 2020 02:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32561 * 119.99981 * 2 1 4 4 C 1.47813 * 119.99935 * 175.16746 * 3 2 1 5 5 C 1.39538 * 120.14350 * 317.44764 * 4 3 2 6 6 C 1.37973 * 119.85825 * 179.73956 * 5 4 3 7 7 C 1.38343 * 120.14138 * 0.51032 * 6 5 4 8 8 C 1.38347 * 120.28491 * 359.76327 * 7 6 5 9 9 C 1.37976 * 120.14515 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99605 * 179.97438 * 2 1 3 11 11 N 1.46889 * 109.47353 * 275.97375 * 10 2 1 12 12 C 1.46902 * 111.00268 * 66.04875 * 11 10 2 13 13 C 1.46903 * 111.00047 * 190.00412 * 11 10 2 14 14 C 1.53002 * 109.47214 * 170.00359 * 13 11 10 15 15 H 1.08998 * 109.47126 * 59.99833 * 14 13 11 16 16 O 1.42902 * 109.46994 * 299.99700 * 14 13 11 17 17 C 1.50698 * 109.47115 * 179.97438 * 14 13 11 18 18 H 1.08003 * 119.99994 * 359.97438 * 17 14 13 19 19 C 1.37873 * 120.00450 * 179.97438 * 17 14 13 20 20 N 1.31509 * 120.00485 * 179.97438 * 19 17 14 21 21 Si 1.86806 * 119.99762 * 359.97438 * 19 17 14 22 22 H 1.48506 * 109.46971 * 89.99921 * 21 19 17 23 23 H 1.48497 * 109.47204 * 210.00021 * 21 19 17 24 24 H 1.48502 * 109.46909 * 330.00013 * 21 19 17 25 25 H 1.09005 * 109.47023 * 90.00679 * 1 2 3 26 26 H 1.08996 * 109.47834 * 210.00383 * 1 2 3 27 27 H 1.09006 * 109.47314 * 330.00878 * 1 2 3 28 28 H 1.07994 * 120.00113 * 354.89018 * 3 2 1 29 29 H 1.08008 * 120.06766 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.92756 * 180.25459 * 6 5 4 31 31 H 1.08000 * 119.85805 * 179.73828 * 7 6 5 32 32 H 1.07999 * 119.92726 * 179.97438 * 8 7 6 33 33 H 1.07991 * 120.07464 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.46656 * 35.97847 * 10 2 1 35 35 H 1.09003 * 109.46550 * 155.97620 * 10 2 1 36 36 H 1.08998 * 109.47009 * 59.99546 * 12 11 10 37 37 H 1.09002 * 109.47330 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.47145 * 299.99953 * 12 11 10 39 39 H 1.09001 * 109.46922 * 289.99833 * 13 11 10 40 40 H 1.08998 * 109.47211 * 50.00244 * 13 11 10 41 41 H 0.96699 * 114.00052 * 300.00130 * 16 14 13 42 42 H 0.96999 * 120.00242 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1480 0.0000 4 6 3.6440 1.1503 0.1078 5 6 4.2819 0.2976 1.0095 6 6 5.6585 0.3007 1.1015 7 6 6.4057 1.1543 0.3097 8 6 5.7791 2.0062 -0.5822 9 6 4.4034 2.0091 -0.6877 10 6 2.2604 -1.3052 0.0006 11 7 2.3804 -1.8007 1.3782 12 6 1.0647 -2.1566 1.9262 13 6 3.3058 -2.9394 1.4493 14 6 3.5984 -3.2680 2.9147 15 1 2.6684 -3.5234 3.4225 16 8 4.1910 -2.1324 3.5483 17 6 4.5473 -4.4365 2.9877 18 1 4.9054 -4.8989 2.0797 19 6 4.9582 -4.9155 4.2135 20 7 5.7858 -5.9355 4.2772 21 14 4.3394 -4.1153 5.7840 22 1 3.0876 -4.7846 6.2205 23 1 5.3685 -4.2488 6.8463 24 1 4.0701 -2.6766 5.5336 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 1.6330 2.0814 -0.0833 29 1 3.6994 -0.3661 1.6314 30 1 6.1537 -0.3617 1.7961 31 1 7.4829 1.1560 0.3885 32 1 6.3680 2.6705 -1.1972 33 1 3.9154 2.6742 -1.3846 34 1 1.7217 -2.0359 -0.6028 35 1 3.2550 -1.1507 -0.4179 36 1 0.6142 -2.9364 1.3122 37 1 1.1826 -2.5208 2.9467 38 1 0.4210 -1.2769 1.9260 39 1 2.8538 -3.8056 0.9660 40 1 4.2358 -2.6841 0.9415 41 1 5.0240 -1.8486 3.1476 42 1 6.0752 -6.2722 5.1396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354711769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:24 Heat of formation + Delta-G solvation = -13.412015 kcal Electronic energy + Delta-G solvation = -21929.780586 eV Core-core repulsion = 18874.725229 eV Total energy + Delta-G solvation = -3055.055357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50443 -39.06595 -37.49314 -35.30175 -34.38830 -31.95961 -31.64863 -30.51460 -28.75972 -27.28394 -27.16713 -23.97505 -23.15004 -22.63753 -21.71597 -19.38645 -19.13430 -17.68380 -16.89420 -16.75149 -16.44215 -16.23926 -16.08212 -15.61898 -15.22476 -14.98075 -14.61824 -14.55315 -14.13840 -13.94268 -13.80529 -13.48634 -13.44454 -13.08421 -12.94949 -12.68899 -12.59387 -12.51043 -12.39455 -11.88957 -11.76862 -11.60753 -11.51347 -11.01123 -10.79453 -10.37047 -10.10050 -9.63906 -9.17694 -8.91654 -8.34342 -6.48665 0.26066 0.69254 1.40101 1.46293 1.47158 1.77302 2.45010 3.02854 3.05208 3.20248 3.82997 4.02141 4.06597 4.17289 4.23722 4.26884 4.28947 4.40053 4.51168 4.55310 4.63498 4.72006 4.72445 4.80778 4.85337 4.90887 4.96792 4.98405 5.03937 5.21064 5.27296 5.43055 5.47035 5.50033 5.58029 5.74272 5.79735 5.90683 6.07540 6.09266 6.12530 6.23073 6.33892 6.64120 7.22694 7.37485 8.79931 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.006021 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.754953 B = 4649.472290 C = 5691.619809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C -0.118 4.118 4 C -0.075 4.075 5 C -0.128 4.128 6 C -0.143 4.143 7 C -0.131 4.131 8 C -0.135 4.135 9 C -0.120 4.120 10 C 0.083 3.917 11 N -0.523 5.523 12 C 0.014 3.986 13 C 0.051 3.949 14 C 0.212 3.788 15 H 0.051 0.949 16 O -0.568 6.568 17 C -0.565 4.565 18 H 0.034 0.966 19 C 0.031 3.969 20 N -0.941 5.941 21 Si 0.936 3.064 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.202 1.202 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.137 0.863 29 H 0.162 0.838 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.024 0.976 40 H 0.064 0.936 41 H 0.361 0.639 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.295 17.142 -10.218 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.108 4.108 3 C -0.137 4.137 4 C -0.075 4.075 5 C -0.146 4.146 6 C -0.161 4.161 7 C -0.149 4.149 8 C -0.153 4.153 9 C -0.138 4.138 10 C -0.044 4.044 11 N -0.247 5.247 12 C -0.133 4.133 13 C -0.077 4.077 14 C 0.154 3.846 15 H 0.069 0.931 16 O -0.374 6.374 17 C -0.603 4.603 18 H 0.053 0.947 19 C -0.169 4.169 20 N -0.580 5.580 21 Si 0.760 3.240 22 H -0.213 1.213 23 H -0.227 1.227 24 H -0.124 1.124 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.155 0.845 29 H 0.179 0.821 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.208 0.792 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.557 17.350 -9.471 21.539 hybrid contribution 0.578 -1.308 -0.092 1.433 sum -7.979 16.043 -9.562 20.309 Atomic orbital electron populations 1.21034 0.90162 1.03466 1.02960 1.21983 0.96407 0.93327 0.99129 1.21594 0.91553 0.98090 1.02497 1.19281 0.93916 0.97078 0.97213 1.22689 0.95394 0.98070 0.98402 1.21358 0.94725 0.99821 1.00232 1.21463 1.00533 0.96380 0.96545 1.21304 0.94864 0.99756 0.99338 1.21505 0.94113 0.98895 0.99278 1.21220 0.99683 0.94327 0.89188 1.62045 1.10569 1.32977 1.19084 1.22680 0.90138 1.00774 0.99728 1.22541 0.95835 0.90844 0.98496 1.19483 0.92648 0.83204 0.89296 0.93087 1.86618 1.41296 1.49633 1.59885 1.21844 1.29182 1.16174 0.93109 0.94748 1.25810 0.93736 0.94140 1.03187 1.70083 1.34657 1.26651 1.26611 0.86035 0.77110 0.83537 0.77306 1.21257 1.22667 1.12350 0.90302 0.91066 0.90494 0.84525 0.82099 0.86537 0.85126 0.84063 0.84337 0.94388 0.91169 0.95321 0.92510 0.88950 0.95735 0.91797 0.79229 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 9.37 71.23 0.67 -1.36 16 2 C -0.11 -2.45 5.09 -17.60 -0.09 -2.54 16 3 C -0.12 -2.68 9.36 23.66 0.22 -2.46 16 4 C -0.07 -1.97 4.97 -20.12 -0.10 -2.07 16 5 C -0.13 -3.88 7.62 22.52 0.17 -3.71 16 6 C -0.14 -4.22 10.03 22.23 0.22 -4.00 16 7 C -0.13 -3.29 10.04 22.32 0.22 -3.07 16 8 C -0.13 -2.98 10.03 22.23 0.22 -2.76 16 9 C -0.12 -2.72 9.79 22.52 0.22 -2.50 16 10 C 0.08 2.27 4.09 85.56 0.35 2.62 16 11 N -0.52 -16.49 2.30 -927.04 -2.13 -18.62 16 12 C 0.01 0.41 8.41 127.69 1.07 1.48 16 13 C 0.05 1.94 4.26 86.30 0.37 2.31 16 14 C 0.21 9.55 2.19 29.85 0.07 9.62 16 15 H 0.05 2.36 5.90 -2.39 -0.01 2.35 16 16 O -0.57 -24.64 9.72 -148.98 -1.45 -26.09 16 17 C -0.57 -31.46 9.34 25.60 0.24 -31.22 16 18 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 19 C 0.03 1.78 5.47 84.65 0.46 2.25 16 20 N -0.94 -58.53 13.96 21.44 0.30 -58.23 16 21 Si 0.94 45.15 26.99 68.60 1.85 47.00 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.20 -9.27 5.30 99.48 0.53 -8.75 16 25 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.07 1.23 5.52 -2.39 -0.01 1.21 16 27 H 0.08 1.12 8.07 -2.38 -0.02 1.10 16 28 H 0.14 2.44 8.05 -2.91 -0.02 2.42 16 29 H 0.16 5.39 4.22 -2.91 -0.01 5.38 16 30 H 0.12 3.44 7.70 -2.91 -0.02 3.42 16 31 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.14 2.40 8.06 -2.92 -0.02 2.37 16 34 H 0.04 1.01 8.12 -2.39 -0.02 0.99 16 35 H 0.07 2.12 5.71 -2.39 -0.01 2.10 16 36 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 1.82 6.30 -2.39 -0.02 1.80 16 38 H 0.09 2.21 5.21 -2.39 -0.01 2.19 16 39 H 0.02 0.97 8.12 -2.39 -0.02 0.95 16 40 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 41 H 0.36 14.44 8.68 -74.06 -0.64 13.80 16 42 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -65.57 328.84 3.08 -62.49 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.19 Total: 30.86 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 4.32 Total: -37.41 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.83 Total: -76.85 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -1.45 Total: -26.09 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.85 Total: 47.00 kcal Total: -65.57 3.08 -62.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354711769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.076 kcal (2) G-P(sol) polarization free energy of solvation -65.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds