Wall clock time and date at job start Mon Mar 30 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47597 * 2 1 4 4 C 1.38238 * 119.99939 * 89.99197 * 3 2 1 5 5 C 1.38236 * 119.99608 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.00092 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99728 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47401 * 90.00020 * 7 6 5 9 9 N 1.46897 * 109.47109 * 180.02562 * 8 7 6 10 10 C 1.47479 * 110.99965 * 169.99973 * 9 8 7 11 11 C 1.53517 * 87.99753 * 138.66774 * 10 9 8 12 12 O 1.42906 * 114.16678 * 87.65378 * 11 10 9 13 13 C 1.50698 * 114.17065 * 220.35504 * 11 10 9 14 14 H 1.07995 * 120.00122 * 0.02562 * 13 11 10 15 15 C 1.37875 * 119.99831 * 180.02562 * 13 11 10 16 16 N 1.31519 * 120.00087 * 180.02562 * 15 13 11 17 17 Si 1.86803 * 120.00030 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47114 * 90.00344 * 17 15 13 19 19 H 1.48502 * 109.46994 * 209.99928 * 17 15 13 20 20 H 1.48500 * 109.47211 * 329.99966 * 17 15 13 21 21 C 1.47487 * 110.99585 * 265.96938 * 9 8 7 22 22 C 1.38229 * 119.99792 * 0.25070 * 6 5 4 23 23 C 1.38234 * 119.99571 * 270.02362 * 3 2 1 24 24 H 1.09000 * 109.47247 * 300.00427 * 1 2 3 25 25 H 1.09003 * 109.46944 * 60.00308 * 1 2 3 26 26 H 1.08994 * 109.47444 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47247 * 239.99573 * 2 1 3 28 28 H 1.09003 * 109.46944 * 119.99692 * 2 1 3 29 29 H 1.07991 * 119.99965 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.99495 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.46944 * 329.99411 * 7 6 5 32 32 H 1.08996 * 109.46710 * 209.99935 * 7 6 5 33 33 H 1.08993 * 109.47213 * 59.99403 * 8 7 6 34 34 H 1.09000 * 109.46643 * 299.99814 * 8 7 6 35 35 H 1.09002 * 113.47562 * 253.46722 * 10 9 8 36 36 H 1.09003 * 113.47677 * 23.87325 * 10 9 8 37 37 H 0.96696 * 113.99578 * 180.02562 * 12 11 10 38 38 H 0.96994 * 120.00020 * 179.97438 * 16 15 13 39 39 H 1.09004 * 113.47787 * 336.06095 * 21 9 8 40 40 H 1.09001 * 113.47615 * 106.47267 * 21 9 8 41 41 H 1.08010 * 119.99873 * 179.72843 * 22 6 5 42 42 H 1.07993 * 120.00420 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7231 3.3759 1.1971 6 6 2.9527 4.0278 -0.0001 7 6 3.4540 5.4489 -0.0001 8 6 4.9840 5.4501 -0.0006 9 7 5.4727 6.8354 0.0001 10 6 6.9272 6.8827 0.2388 11 6 7.0143 7.9725 -0.8389 12 8 6.8156 9.2993 -0.3466 13 6 8.2077 7.8453 -1.7502 14 1 8.9094 7.0362 -1.6112 15 6 8.4037 8.7618 -2.7614 16 7 9.4450 8.6505 -3.5571 17 14 7.1904 10.1617 -3.0014 18 1 7.6194 11.3323 -2.1947 19 1 7.1474 10.5388 -4.4371 20 1 5.8398 9.7267 -2.5632 21 6 5.7393 7.3023 -1.3733 22 6 2.7169 3.3780 -1.1972 23 6 2.2624 2.0725 -1.1972 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0830 1.5633 2.1324 30 1 2.9026 3.8851 2.1324 31 1 3.0905 5.9624 0.8899 32 1 3.0901 5.9625 -0.8899 33 1 5.3475 4.9366 -0.8906 34 1 5.3479 4.9364 0.8893 35 1 7.1925 7.2353 1.2355 36 1 7.4421 5.9611 -0.0331 37 1 6.8705 9.9837 -1.0274 38 1 9.5827 9.2950 -4.2687 39 1 5.9373 6.4932 -2.0763 40 1 4.9972 8.0099 -1.7431 41 1 2.8921 3.8888 -2.1326 42 1 2.0824 1.5634 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473414926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:01 Heat of formation + Delta-G solvation = 9.645071 kcal Electronic energy + Delta-G solvation = -20661.600290 eV Core-core repulsion = 17607.544763 eV Total energy + Delta-G solvation = -3054.055527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.79633 -39.27241 -35.56675 -34.56321 -32.44199 -32.02064 -30.95734 -29.00290 -26.88728 -25.18043 -24.76370 -22.97902 -22.76180 -21.22718 -20.33231 -19.10067 -17.31287 -16.28439 -16.23145 -15.78990 -15.45265 -14.92614 -14.62342 -14.08292 -13.88662 -13.85465 -13.47087 -13.32478 -13.17110 -12.87192 -12.71085 -12.21447 -12.15272 -12.06294 -11.72283 -11.49241 -11.25785 -11.05622 -10.98630 -10.85559 -10.67476 -10.43042 -10.20675 -9.95721 -9.23793 -8.95008 -8.92243 -8.54578 -8.51118 -8.09984 -6.33571 -4.37475 1.29636 1.37478 3.06927 3.15035 3.21793 3.69349 4.12527 4.52798 4.63502 4.66680 4.81465 4.94358 4.97062 5.07886 5.11859 5.24941 5.30725 5.35448 5.44372 5.47250 5.60860 5.63889 5.72967 5.76383 5.82467 5.90697 5.91853 5.95061 6.06971 6.10477 6.24707 6.37184 6.40367 6.49679 6.54548 6.64211 6.68809 6.88953 6.96471 7.00951 7.32504 7.78645 8.12968 8.68760 8.69690 9.25872 10.79038 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035534 B = 0.003239 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.778166 B = 8641.856944 C = 8852.531590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.077 4.077 7 C -0.072 4.072 8 C 0.025 3.975 9 N -0.473 5.473 10 C 0.019 3.981 11 C 0.202 3.798 12 O -0.548 6.548 13 C -0.533 4.533 14 H 0.086 0.914 15 C 0.077 3.923 16 N -0.883 5.883 17 Si 0.861 3.139 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.254 1.254 21 C -0.034 4.034 22 C -0.114 4.114 23 C -0.117 4.117 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.347 0.653 38 H 0.269 0.731 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.121 0.879 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.807 -13.516 5.764 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.136 4.136 5 C -0.132 4.132 6 C -0.077 4.077 7 C -0.109 4.109 8 C -0.104 4.104 9 N -0.195 5.195 10 C -0.110 4.110 11 C 0.161 3.839 12 O -0.359 6.359 13 C -0.571 4.571 14 H 0.104 0.896 15 C -0.128 4.128 16 N -0.519 5.519 17 Si 0.690 3.310 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.179 1.179 21 C -0.163 4.163 22 C -0.132 4.132 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.199 0.801 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.139 0.861 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.252 -13.426 6.603 22.090 hybrid contribution 0.032 0.454 -1.353 1.427 sum -16.220 -12.972 5.251 21.422 Atomic orbital electron populations 1.21747 0.94881 1.01507 1.02221 1.20519 0.96056 0.92873 1.02669 1.19846 1.00040 0.96178 0.93296 1.20976 1.00331 0.94928 0.97337 1.21065 0.99634 0.94754 0.97755 1.19997 0.98181 0.96491 0.93066 1.20483 0.95562 0.91506 1.03398 1.22621 0.94510 0.92256 1.00993 1.68857 1.15208 1.17057 1.18401 1.23893 0.88160 0.98380 1.00556 1.20102 0.91792 0.80348 0.91637 1.86464 1.94830 1.16114 1.38483 1.21319 1.08661 1.14291 1.12846 0.89569 1.25020 0.95023 0.97468 0.95270 1.69872 1.27392 1.36404 1.18215 0.87275 0.82689 0.83240 0.77769 1.19399 1.21322 1.17919 1.25036 1.00332 1.00328 0.90627 1.21098 0.99449 0.94776 0.97852 1.20990 1.00203 0.94870 0.97392 0.92605 0.92579 0.92549 0.91181 0.91213 0.86409 0.86069 0.90480 0.91119 0.93815 0.91604 0.90547 0.90987 0.80076 0.92082 0.91000 0.91371 0.86076 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.90 37.16 0.37 -0.67 16 2 C -0.08 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.09 -0.97 5.13 -104.62 -0.54 -1.51 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 5 C -0.11 -1.35 9.70 -39.58 -0.38 -1.73 16 6 C -0.08 -0.99 5.13 -104.62 -0.54 -1.53 16 7 C -0.07 -1.02 5.67 -27.88 -0.16 -1.17 16 8 C 0.03 0.41 4.80 -3.83 -0.02 0.39 16 9 N -0.47 -9.37 6.33 -244.40 -1.55 -10.91 16 10 C 0.02 0.40 7.09 -7.54 -0.05 0.34 16 11 C 0.20 4.91 1.10 -91.18 -0.10 4.81 16 12 O -0.55 -13.75 13.32 -35.23 -0.47 -14.22 16 13 C -0.53 -14.65 9.27 -34.44 -0.32 -14.97 16 14 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 15 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 16 N -0.88 -25.82 13.96 55.43 0.77 -25.05 16 17 Si 0.86 20.18 24.42 -169.99 -4.15 16.03 16 18 H -0.27 -6.07 7.06 56.52 0.40 -5.67 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.25 -5.71 5.48 56.52 0.31 -5.41 16 21 C -0.03 -0.73 6.55 -7.47 -0.05 -0.78 16 22 C -0.11 -1.40 9.70 -39.58 -0.38 -1.78 16 23 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 32 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.04 0.73 7.30 -51.93 -0.38 0.35 16 34 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 36 H 0.07 1.46 7.87 -51.93 -0.41 1.05 16 37 H 0.35 8.36 3.17 45.56 0.14 8.50 16 38 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 39 H 0.07 1.53 7.38 -51.93 -0.38 1.15 16 40 H 0.07 1.48 7.13 -51.93 -0.37 1.11 16 41 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -29.64 337.08 -10.05 -39.69 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.53 Total: 10.11 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.21 Total: -20.73 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.77 Total: -35.96 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.47 Total: -14.22 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.15 Total: 16.03 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.64 -10.05 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.339 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds