Wall clock time and date at job start Mon Mar 30 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47597 * 2 1 4 4 C 1.38238 * 119.99939 * 89.99197 * 3 2 1 5 5 C 1.38236 * 119.99608 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.00092 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99728 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47401 * 90.00020 * 7 6 5 9 9 N 1.46897 * 109.47109 * 180.02562 * 8 7 6 10 10 C 1.47479 * 110.99965 * 169.99973 * 9 8 7 11 11 C 1.53517 * 87.99753 * 138.66774 * 10 9 8 12 12 O 1.42906 * 114.16678 * 87.65378 * 11 10 9 13 13 C 1.50698 * 114.17065 * 220.35504 * 11 10 9 14 14 H 1.07995 * 120.00122 * 0.02562 * 13 11 10 15 15 C 1.37875 * 119.99831 * 180.02562 * 13 11 10 16 16 N 1.31519 * 120.00087 * 180.02562 * 15 13 11 17 17 Si 1.86803 * 120.00030 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47114 * 90.00344 * 17 15 13 19 19 H 1.48502 * 109.46994 * 209.99928 * 17 15 13 20 20 H 1.48500 * 109.47211 * 329.99966 * 17 15 13 21 21 C 1.47487 * 110.99585 * 265.96938 * 9 8 7 22 22 C 1.38229 * 119.99792 * 0.25070 * 6 5 4 23 23 C 1.38234 * 119.99571 * 270.02362 * 3 2 1 24 24 H 1.09000 * 109.47247 * 300.00427 * 1 2 3 25 25 H 1.09003 * 109.46944 * 60.00308 * 1 2 3 26 26 H 1.08994 * 109.47444 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47247 * 239.99573 * 2 1 3 28 28 H 1.09003 * 109.46944 * 119.99692 * 2 1 3 29 29 H 1.07991 * 119.99965 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.99495 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.46944 * 329.99411 * 7 6 5 32 32 H 1.08996 * 109.46710 * 209.99935 * 7 6 5 33 33 H 1.08993 * 109.47213 * 59.99403 * 8 7 6 34 34 H 1.09000 * 109.46643 * 299.99814 * 8 7 6 35 35 H 1.09002 * 113.47562 * 253.46722 * 10 9 8 36 36 H 1.09003 * 113.47677 * 23.87325 * 10 9 8 37 37 H 0.96696 * 113.99578 * 180.02562 * 12 11 10 38 38 H 0.96994 * 120.00020 * 179.97438 * 16 15 13 39 39 H 1.09004 * 113.47787 * 336.06095 * 21 9 8 40 40 H 1.09001 * 113.47615 * 106.47267 * 21 9 8 41 41 H 1.08010 * 119.99873 * 179.72843 * 22 6 5 42 42 H 1.07993 * 120.00420 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7231 3.3759 1.1971 6 6 2.9527 4.0278 -0.0001 7 6 3.4540 5.4489 -0.0001 8 6 4.9840 5.4501 -0.0006 9 7 5.4727 6.8354 0.0001 10 6 6.9272 6.8827 0.2388 11 6 7.0143 7.9725 -0.8389 12 8 6.8156 9.2993 -0.3466 13 6 8.2077 7.8453 -1.7502 14 1 8.9094 7.0362 -1.6112 15 6 8.4037 8.7618 -2.7614 16 7 9.4450 8.6505 -3.5571 17 14 7.1904 10.1617 -3.0014 18 1 7.6194 11.3323 -2.1947 19 1 7.1474 10.5388 -4.4371 20 1 5.8398 9.7267 -2.5632 21 6 5.7393 7.3023 -1.3733 22 6 2.7169 3.3780 -1.1972 23 6 2.2624 2.0725 -1.1972 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0830 1.5633 2.1324 30 1 2.9026 3.8851 2.1324 31 1 3.0905 5.9624 0.8899 32 1 3.0901 5.9625 -0.8899 33 1 5.3475 4.9366 -0.8906 34 1 5.3479 4.9364 0.8893 35 1 7.1925 7.2353 1.2355 36 1 7.4421 5.9611 -0.0331 37 1 6.8705 9.9837 -1.0274 38 1 9.5827 9.2950 -4.2687 39 1 5.9373 6.4932 -2.0763 40 1 4.9972 8.0099 -1.7431 41 1 2.8921 3.8888 -2.1326 42 1 2.0824 1.5634 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473414926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:01 Heat of formation + Delta-G solvation = -10.251973 kcal Electronic energy + Delta-G solvation = -20662.463091 eV Core-core repulsion = 17607.544763 eV Total energy + Delta-G solvation = -3054.918327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28925 -40.35760 -37.09620 -35.71532 -34.55719 -33.08825 -31.80414 -30.29330 -28.44632 -26.90742 -26.14968 -24.00464 -23.61408 -22.50822 -21.26676 -20.92029 -19.35874 -18.18342 -17.27546 -16.80531 -16.72854 -16.14619 -15.96663 -15.58669 -15.12244 -14.98251 -14.65897 -14.55423 -14.48377 -14.18543 -13.97185 -13.72402 -13.49971 -13.24290 -12.96191 -12.71070 -12.49551 -12.39245 -12.24541 -12.10165 -11.91935 -11.70712 -11.64373 -11.54368 -11.12179 -10.94371 -10.42802 -9.82713 -9.79473 -9.37767 -8.46345 -6.56287 0.42011 0.51386 1.20740 1.27393 1.36371 2.14712 2.75964 2.80214 3.05935 3.49771 3.80143 3.87720 3.92752 4.02442 4.06502 4.16698 4.19949 4.27851 4.38302 4.51675 4.52481 4.60199 4.61684 4.64866 4.73250 4.78582 4.86881 4.89699 5.06307 5.07463 5.09206 5.10904 5.21611 5.25392 5.30321 5.37981 5.40548 5.54512 5.74108 5.77182 5.99954 6.14557 6.18867 6.48211 6.74648 7.11302 8.69635 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035534 B = 0.003239 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.778166 B = 8641.856944 C = 8852.531590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.121 4.121 6 C -0.094 4.094 7 C -0.061 4.061 8 C 0.028 3.972 9 N -0.469 5.469 10 C 0.023 3.977 11 C 0.184 3.816 12 O -0.554 6.554 13 C -0.544 4.544 14 H 0.050 0.950 15 C 0.023 3.977 16 N -0.928 5.928 17 Si 0.923 3.077 18 H -0.252 1.252 19 H -0.282 1.282 20 H -0.238 1.238 21 C -0.023 4.023 22 C -0.128 4.128 23 C -0.125 4.125 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.350 0.650 38 H 0.273 0.727 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.025 -14.217 6.576 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.140 4.140 5 C -0.139 4.139 6 C -0.094 4.094 7 C -0.099 4.099 8 C -0.101 4.101 9 N -0.191 5.191 10 C -0.105 4.105 11 C 0.143 3.857 12 O -0.365 6.365 13 C -0.582 4.582 14 H 0.068 0.932 15 C -0.178 4.178 16 N -0.566 5.566 17 Si 0.748 3.252 18 H -0.178 1.178 19 H -0.208 1.208 20 H -0.163 1.163 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.143 4.143 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.202 0.798 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.139 0.861 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.479 -14.138 7.432 24.425 hybrid contribution 0.767 0.545 -1.572 1.832 sum -17.712 -13.593 5.860 23.083 Atomic orbital electron populations 1.21731 0.94182 1.02396 1.01844 1.20579 0.96561 0.91347 1.03566 1.20199 0.98929 0.97326 0.92965 1.21268 0.99717 0.94623 0.98439 1.21249 0.99591 0.95374 0.97728 1.19918 0.99730 0.95938 0.93851 1.20336 0.93699 0.92649 1.03184 1.22659 0.96098 0.90084 1.01237 1.68824 1.14018 1.19466 1.16811 1.23835 0.89351 0.97443 0.99906 1.20233 0.91782 0.80884 0.92797 1.86456 1.94797 1.16418 1.38842 1.21484 1.09417 1.13496 1.13832 0.93161 1.25863 0.96879 1.00263 0.94760 1.70006 1.29525 1.37870 1.19158 0.86257 0.80824 0.80044 0.78102 1.17794 1.20810 1.16252 1.24826 0.98740 1.00091 0.91620 1.21228 1.00013 0.95542 0.97778 1.21233 0.99976 0.94540 0.98541 0.92846 0.93107 0.91064 0.90498 0.90162 0.84323 0.85135 0.90249 0.91741 0.94325 0.90538 0.89947 0.90613 0.79762 0.91770 0.91122 0.91039 0.86131 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.90 71.98 0.71 -0.99 16 2 C -0.08 -1.11 6.06 29.85 0.18 -0.93 16 3 C -0.09 -1.76 5.13 -19.87 -0.10 -1.86 16 4 C -0.12 -2.34 9.70 22.27 0.22 -2.13 16 5 C -0.12 -2.65 9.70 22.27 0.22 -2.44 16 6 C -0.09 -2.31 5.13 -19.87 -0.10 -2.41 16 7 C -0.06 -1.65 5.67 29.85 0.17 -1.48 16 8 C 0.03 0.87 4.80 86.30 0.41 1.28 16 9 N -0.47 -17.92 6.33 -927.48 -5.87 -23.79 16 10 C 0.02 0.98 7.09 83.58 0.59 1.57 16 11 C 0.18 8.84 1.10 -11.15 -0.01 8.82 16 12 O -0.55 -27.00 13.32 -148.98 -1.98 -28.98 16 13 C -0.54 -30.52 9.27 25.60 0.24 -30.28 16 14 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 15 C 0.02 1.27 5.47 84.65 0.46 1.73 16 16 N -0.93 -55.51 13.96 21.45 0.30 -55.21 16 17 Si 0.92 41.21 24.42 68.60 1.67 42.88 16 18 H -0.25 -10.63 7.06 99.48 0.70 -9.93 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.24 -9.97 5.48 99.48 0.54 -9.42 16 21 C -0.02 -0.98 6.55 83.62 0.55 -0.43 16 22 C -0.13 -3.02 9.70 22.27 0.22 -2.80 16 23 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 28 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 29 H 0.14 2.00 8.06 -2.92 -0.02 1.98 16 30 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 32 H 0.06 1.80 8.08 -2.39 -0.02 1.78 16 33 H 0.04 1.26 7.30 -2.39 -0.02 1.24 16 34 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16 35 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.08 3.06 7.87 -2.39 -0.02 3.04 16 37 H 0.35 16.15 3.17 -74.06 -0.23 15.91 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.07 2.98 7.38 -2.39 -0.02 2.97 16 40 H 0.07 2.97 7.13 -2.39 -0.02 2.96 16 41 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -63.39 337.08 -1.33 -64.72 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.59 Total: 35.07 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 3.97 Total: -34.69 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -5.58 Total: -79.00 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -1.98 Total: -28.98 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.67 Total: 42.88 kcal Total: -63.39 -1.33 -64.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.469 kcal (2) G-P(sol) polarization free energy of solvation -63.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds