Wall clock time and date at job start Mon Mar 30 2020 02:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47114 * 2 1 4 4 C 1.52999 * 109.47666 * 120.00341 * 2 1 3 5 5 C 1.52991 * 109.47345 * 175.00333 * 4 2 1 6 6 N 1.46505 * 109.47165 * 180.02562 * 5 4 2 7 7 C 1.34780 * 119.99925 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00369 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99729 * 179.97438 * 7 6 5 10 10 H 1.09003 * 109.47099 * 322.43525 * 9 7 6 11 11 C 1.50703 * 109.47255 * 82.43223 * 9 7 6 12 12 H 1.08002 * 119.99717 * 54.77883 * 11 9 7 13 13 C 1.37878 * 119.99995 * 234.78269 * 11 9 7 14 14 N 1.31517 * 119.99554 * 175.92208 * 13 11 9 15 15 Si 1.86793 * 120.00153 * 355.91632 * 13 11 9 16 16 H 1.48494 * 109.47473 * 83.73622 * 15 13 11 17 17 H 1.48501 * 109.47143 * 203.73707 * 15 13 11 18 18 H 1.48507 * 109.47286 * 323.73564 * 15 13 11 19 19 C 1.50697 * 109.47123 * 202.43479 * 9 7 6 20 20 C 1.38230 * 120.00152 * 112.25371 * 19 9 7 21 21 C 1.38233 * 119.99934 * 179.97438 * 20 19 9 22 22 C 1.38232 * 120.00305 * 359.95464 * 21 20 19 23 23 C 1.38237 * 119.99727 * 0.02562 * 22 21 20 24 24 C 1.38231 * 120.00078 * 0.06436 * 23 22 21 25 25 H 1.08996 * 109.47233 * 299.99338 * 1 2 3 26 26 H 1.08999 * 109.47120 * 59.99861 * 1 2 3 27 27 H 1.09005 * 109.47079 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47251 * 240.00885 * 2 1 3 29 29 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47166 * 300.00848 * 3 2 1 31 31 H 1.09005 * 109.46339 * 60.00327 * 3 2 1 32 32 H 1.09004 * 109.46938 * 54.99993 * 4 2 1 33 33 H 1.09004 * 109.46843 * 295.00221 * 4 2 1 34 34 H 1.08995 * 109.47458 * 59.99903 * 5 4 2 35 35 H 1.09004 * 109.47058 * 299.99756 * 5 4 2 36 36 H 0.97003 * 119.99794 * 359.97438 * 6 5 4 37 37 H 0.96996 * 119.99434 * 179.97438 * 14 13 11 38 38 H 1.07998 * 120.00183 * 359.97438 * 20 19 9 39 39 H 1.08000 * 120.00058 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00160 * 179.71673 * 22 21 20 41 41 H 1.08004 * 120.00104 * 179.97438 * 23 22 21 42 42 H 1.08006 * 120.00279 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5648 -0.8310 1.1878 6 7 4.0532 -1.5222 2.3837 7 6 5.3741 -1.7346 2.5470 8 8 6.1584 -1.3540 1.7039 9 6 5.8765 -2.4451 3.7774 10 1 5.2843 -2.1403 4.6403 11 6 5.7519 -3.9344 3.5836 12 1 6.2038 -4.4068 2.7239 13 6 5.0609 -4.6940 4.5037 14 7 4.8833 -5.9801 4.2940 15 14 4.3772 -3.8963 6.0482 16 1 3.0622 -3.2768 5.7449 17 1 4.2070 -4.9269 7.1038 18 1 5.3188 -2.8512 6.5241 19 6 7.3221 -2.0879 4.0087 20 6 7.6792 -1.3285 5.1072 21 6 9.0053 -1.0012 5.3196 22 6 9.9745 -1.4342 4.4341 23 6 9.6175 -2.1939 3.3358 24 6 8.2911 -2.5196 3.1224 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6055 -1.7199 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 3.9994 0.1675 1.1420 35 1 3.8532 -1.3939 0.3001 36 1 3.4259 -1.8269 3.0579 37 1 4.3975 -6.5145 4.9415 38 1 6.9221 -0.9908 5.7994 39 1 9.2843 -0.4076 6.1776 40 1 11.0100 -1.1746 4.5976 41 1 10.3746 -2.5319 2.6437 42 1 8.0121 -3.1129 2.2641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530977282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:59 Heat of formation + Delta-G solvation = -41.791045 kcal Electronic energy + Delta-G solvation = -21153.846583 eV Core-core repulsion = 18097.560619 eV Total energy + Delta-G solvation = -3056.285964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.31084 -38.01170 -36.78308 -33.66674 -33.58207 -31.53394 -30.11685 -29.12471 -27.51915 -27.24274 -23.91510 -22.76867 -21.82443 -20.84743 -20.20979 -19.10275 -17.14740 -16.31891 -16.06273 -15.47124 -15.42023 -14.66755 -14.32815 -14.23332 -13.82193 -13.81122 -13.18502 -12.99338 -12.80671 -12.60101 -12.50096 -12.28197 -12.05841 -11.80740 -11.72052 -11.41199 -11.11887 -11.08274 -10.87651 -10.69358 -10.62168 -10.46388 -10.12726 -9.99767 -9.50097 -9.01820 -8.68302 -8.36930 -8.12011 -7.80420 -6.30770 -4.33150 2.15603 2.22850 3.08416 3.21616 3.22166 3.67212 3.94586 4.18940 4.63949 4.79930 4.82983 4.91087 5.04836 5.33439 5.44550 5.54474 5.55667 5.59375 5.62150 5.71534 5.72297 5.75307 5.86740 5.94768 6.02181 6.05659 6.10374 6.18397 6.21656 6.34149 6.36331 6.42141 6.42747 6.75217 6.87766 7.14749 7.18033 7.27319 7.30345 7.61493 7.81042 8.18086 8.35023 8.73297 9.16636 9.26466 10.80839 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.005647 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.810482 B = 4957.285042 C = 6184.613801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.128 4.128 5 C 0.121 3.879 6 N -0.736 5.736 7 C 0.531 3.469 8 O -0.560 6.560 9 C 0.031 3.969 10 H 0.059 0.941 11 C -0.504 4.504 12 H 0.084 0.916 13 C 0.081 3.919 14 N -0.882 5.882 15 Si 0.868 3.132 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.260 1.260 19 C -0.031 4.031 20 C -0.134 4.134 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.132 4.132 24 C -0.069 4.069 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.398 0.602 37 H 0.269 0.731 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 11.319 -2.408 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.166 4.166 5 C -0.003 4.003 6 N -0.388 5.388 7 C 0.320 3.680 8 O -0.438 6.438 9 C 0.009 3.991 10 H 0.077 0.923 11 C -0.541 4.541 12 H 0.102 0.898 13 C -0.124 4.124 14 N -0.518 5.518 15 Si 0.694 3.306 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.185 1.185 19 C -0.032 4.032 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.087 4.087 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.231 0.769 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.016 11.400 -2.950 12.442 hybrid contribution -0.762 -0.021 1.221 1.439 sum -4.778 11.379 -1.729 12.462 Atomic orbital electron populations 1.21834 0.95210 1.01769 1.01555 1.21036 0.95609 0.96374 0.98232 1.21921 1.01605 0.95832 1.01461 1.21874 0.95109 1.01286 0.98349 1.21268 0.92988 0.97087 0.88993 1.45989 1.08321 1.60949 1.23558 1.21460 0.81159 0.76012 0.89395 1.90564 1.55590 1.51949 1.45745 1.18373 0.90425 0.97777 0.92494 0.92261 1.20557 1.35371 0.86998 1.11190 0.89845 1.25064 0.94884 0.94832 0.97592 1.69861 1.40041 1.05899 1.35963 0.86979 0.79854 0.79902 0.83838 1.19660 1.20897 1.18500 1.19982 0.96465 0.93222 0.93514 1.21000 0.95972 0.99842 0.98390 1.20878 0.93267 1.01424 0.99391 1.20878 0.98393 1.00633 0.96131 1.21059 0.96311 0.99749 0.97854 1.20932 0.91681 0.97469 0.98596 0.92758 0.92819 0.92617 0.90927 0.92119 0.92927 0.92757 0.91115 0.91488 0.92069 0.92173 0.76886 0.92083 0.87260 0.87268 0.87339 0.87092 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.19 37.16 0.34 -0.96 16 2 C -0.09 -0.96 2.92 -90.62 -0.26 -1.22 16 3 C -0.15 -1.47 8.95 37.16 0.33 -1.14 16 4 C -0.13 -1.54 4.80 -26.74 -0.13 -1.66 16 5 C 0.12 1.87 5.43 -4.04 -0.02 1.84 16 6 N -0.74 -13.64 5.56 -60.30 -0.34 -13.98 16 7 C 0.53 11.85 6.93 -10.98 -0.08 11.77 16 8 O -0.56 -13.72 15.23 5.56 0.08 -13.63 16 9 C 0.03 0.72 2.22 -94.08 -0.21 0.51 16 10 H 0.06 1.30 4.57 -51.93 -0.24 1.07 16 11 C -0.50 -13.34 8.24 -34.44 -0.28 -13.63 16 12 H 0.08 2.47 7.69 -52.49 -0.40 2.07 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 14 N -0.88 -25.18 13.96 55.43 0.77 -24.41 16 15 Si 0.87 19.50 26.93 -169.99 -4.58 14.92 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.26 -5.66 6.81 56.52 0.39 -5.27 16 19 C -0.03 -0.70 4.53 -104.63 -0.47 -1.17 16 20 C -0.13 -2.70 9.67 -39.59 -0.38 -3.08 16 21 C -0.13 -2.34 10.05 -39.59 -0.40 -2.74 16 22 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 23 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 24 C -0.07 -1.52 8.05 -39.58 -0.32 -1.84 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.65 6.57 -51.93 -0.34 0.30 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.95 6.57 -51.93 -0.34 0.61 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 6.83 8.47 -40.82 -0.35 6.48 16 37 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.11 2.03 7.96 -52.49 -0.42 1.61 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.12 2.82 7.44 -52.48 -0.39 2.43 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -30.18 344.26 -8.34 -38.53 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.70 Total: 10.41 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.77 Total: -17.02 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.44 Total: -38.38 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.08 Total: -13.63 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.58 Total: 14.92 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.18 -8.34 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530977282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.266 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds