Wall clock time and date at job start Mon Mar 30 2020 02:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47114 * 2 1 4 4 C 1.52999 * 109.47666 * 120.00341 * 2 1 3 5 5 C 1.52991 * 109.47345 * 175.00333 * 4 2 1 6 6 N 1.46505 * 109.47165 * 180.02562 * 5 4 2 7 7 C 1.34780 * 119.99925 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00369 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99729 * 179.97438 * 7 6 5 10 10 H 1.09003 * 109.47099 * 322.43525 * 9 7 6 11 11 C 1.50703 * 109.47255 * 82.43223 * 9 7 6 12 12 H 1.08002 * 119.99717 * 54.77883 * 11 9 7 13 13 C 1.37878 * 119.99995 * 234.78269 * 11 9 7 14 14 N 1.31517 * 119.99554 * 175.92208 * 13 11 9 15 15 Si 1.86793 * 120.00153 * 355.91632 * 13 11 9 16 16 H 1.48494 * 109.47473 * 83.73622 * 15 13 11 17 17 H 1.48501 * 109.47143 * 203.73707 * 15 13 11 18 18 H 1.48507 * 109.47286 * 323.73564 * 15 13 11 19 19 C 1.50697 * 109.47123 * 202.43479 * 9 7 6 20 20 C 1.38230 * 120.00152 * 112.25371 * 19 9 7 21 21 C 1.38233 * 119.99934 * 179.97438 * 20 19 9 22 22 C 1.38232 * 120.00305 * 359.95464 * 21 20 19 23 23 C 1.38237 * 119.99727 * 0.02562 * 22 21 20 24 24 C 1.38231 * 120.00078 * 0.06436 * 23 22 21 25 25 H 1.08996 * 109.47233 * 299.99338 * 1 2 3 26 26 H 1.08999 * 109.47120 * 59.99861 * 1 2 3 27 27 H 1.09005 * 109.47079 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47251 * 240.00885 * 2 1 3 29 29 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47166 * 300.00848 * 3 2 1 31 31 H 1.09005 * 109.46339 * 60.00327 * 3 2 1 32 32 H 1.09004 * 109.46938 * 54.99993 * 4 2 1 33 33 H 1.09004 * 109.46843 * 295.00221 * 4 2 1 34 34 H 1.08995 * 109.47458 * 59.99903 * 5 4 2 35 35 H 1.09004 * 109.47058 * 299.99756 * 5 4 2 36 36 H 0.97003 * 119.99794 * 359.97438 * 6 5 4 37 37 H 0.96996 * 119.99434 * 179.97438 * 14 13 11 38 38 H 1.07998 * 120.00183 * 359.97438 * 20 19 9 39 39 H 1.08000 * 120.00058 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00160 * 179.71673 * 22 21 20 41 41 H 1.08004 * 120.00104 * 179.97438 * 23 22 21 42 42 H 1.08006 * 120.00279 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5648 -0.8310 1.1878 6 7 4.0532 -1.5222 2.3837 7 6 5.3741 -1.7346 2.5470 8 8 6.1584 -1.3540 1.7039 9 6 5.8765 -2.4451 3.7774 10 1 5.2843 -2.1403 4.6403 11 6 5.7519 -3.9344 3.5836 12 1 6.2038 -4.4068 2.7239 13 6 5.0609 -4.6940 4.5037 14 7 4.8833 -5.9801 4.2940 15 14 4.3772 -3.8963 6.0482 16 1 3.0622 -3.2768 5.7449 17 1 4.2070 -4.9269 7.1038 18 1 5.3188 -2.8512 6.5241 19 6 7.3221 -2.0879 4.0087 20 6 7.6792 -1.3285 5.1072 21 6 9.0053 -1.0012 5.3196 22 6 9.9745 -1.4342 4.4341 23 6 9.6175 -2.1939 3.3358 24 6 8.2911 -2.5196 3.1224 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6055 -1.7199 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 3.9994 0.1675 1.1420 35 1 3.8532 -1.3939 0.3001 36 1 3.4259 -1.8269 3.0579 37 1 4.3975 -6.5145 4.9415 38 1 6.9221 -0.9908 5.7994 39 1 9.2843 -0.4076 6.1776 40 1 11.0100 -1.1746 4.5976 41 1 10.3746 -2.5319 2.6437 42 1 8.0121 -3.1129 2.2641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530977282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:59 Heat of formation + Delta-G solvation = -59.725477 kcal Electronic energy + Delta-G solvation = -21154.624279 eV Core-core repulsion = 18097.560619 eV Total energy + Delta-G solvation = -3057.063660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98194 -39.50593 -37.88074 -35.50741 -35.07982 -33.38130 -31.62450 -30.42301 -29.10683 -28.00553 -25.68302 -24.09763 -23.35340 -22.39041 -21.35869 -20.53044 -19.14079 -17.90672 -17.68784 -16.90080 -16.66516 -16.28138 -15.79533 -15.59795 -15.32064 -14.81272 -14.73857 -14.56189 -14.37889 -14.08484 -13.72938 -13.70017 -13.35536 -13.04629 -12.88857 -12.77324 -12.65715 -12.42501 -12.05586 -11.92904 -11.81075 -11.64990 -11.58650 -11.51725 -11.40385 -10.90688 -10.56755 -9.94774 -9.63950 -9.37520 -8.36442 -6.45676 0.63612 0.70625 1.32273 1.39177 1.47986 1.88408 2.29430 2.45331 2.98839 3.16027 3.83862 3.93341 4.02058 4.08257 4.22952 4.28032 4.31934 4.39367 4.41838 4.47917 4.49581 4.67172 4.77558 4.83425 4.83969 4.89371 4.96144 5.02457 5.10592 5.13342 5.20297 5.31042 5.33020 5.38649 5.46806 5.49545 5.63976 5.69969 5.75057 5.95010 6.19179 6.31141 6.57125 6.69642 7.18317 7.45234 8.79216 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.005647 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.810482 B = 4957.285042 C = 6184.613801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.119 4.119 5 C 0.120 3.880 6 N -0.726 5.726 7 C 0.525 3.475 8 O -0.589 6.589 9 C 0.034 3.966 10 H 0.075 0.925 11 C -0.505 4.505 12 H 0.027 0.973 13 C 0.028 3.972 14 N -0.934 5.934 15 Si 0.931 3.069 16 H -0.240 1.240 17 H -0.286 1.286 18 H -0.243 1.243 19 C -0.064 4.064 20 C -0.146 4.146 21 C -0.124 4.124 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.101 4.101 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.406 0.594 37 H 0.272 0.728 38 H 0.127 0.873 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.132 0.868 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 14.085 -0.240 14.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.157 4.157 5 C -0.003 4.003 6 N -0.377 5.377 7 C 0.313 3.687 8 O -0.470 6.470 9 C 0.013 3.987 10 H 0.093 0.907 11 C -0.543 4.543 12 H 0.046 0.954 13 C -0.172 4.172 14 N -0.571 5.571 15 Si 0.753 3.247 16 H -0.163 1.163 17 H -0.212 1.212 18 H -0.167 1.167 19 C -0.065 4.065 20 C -0.164 4.164 21 C -0.142 4.142 22 C -0.152 4.152 23 C -0.155 4.155 24 C -0.120 4.120 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.241 0.759 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.150 0.850 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.478 14.188 -0.799 14.900 hybrid contribution -0.512 -0.890 0.438 1.116 sum -4.990 13.298 -0.361 14.208 Atomic orbital electron populations 1.21800 0.93698 1.02028 1.02481 1.21037 0.96792 0.96408 0.96931 1.21908 1.00684 0.95595 1.02486 1.21840 0.91996 1.01808 1.00024 1.21432 0.95614 0.96313 0.86967 1.45963 1.07208 1.60063 1.24513 1.21388 0.82270 0.76071 0.88934 1.90535 1.56687 1.53347 1.46463 1.18294 0.91849 0.95302 0.93285 0.90724 1.20481 1.34990 0.89200 1.09635 0.95419 1.25953 0.95001 0.95129 1.01136 1.70019 1.41638 1.07877 1.37591 0.85961 0.80751 0.79303 0.78714 1.16347 1.21168 1.16685 1.20047 0.95810 0.95428 0.95180 1.21277 0.97908 0.99547 0.97645 1.21379 0.92091 1.00425 1.00273 1.21370 1.00581 0.98644 0.94556 1.21355 0.95231 0.99709 0.99164 1.20848 0.93758 0.98990 0.98381 0.92055 0.91700 0.92720 0.91565 0.93522 0.91655 0.92026 0.91277 0.90044 0.91855 0.93997 0.75915 0.91896 0.85532 0.83063 0.83094 0.84993 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.19 71.98 0.66 -1.57 16 2 C -0.09 -1.77 2.92 -10.79 -0.03 -1.80 16 3 C -0.15 -2.68 8.95 71.98 0.64 -2.03 16 4 C -0.12 -2.70 4.80 30.59 0.15 -2.56 16 5 C 0.12 3.74 5.43 86.38 0.47 4.21 16 6 N -0.73 -27.10 5.56 -463.07 -2.57 -29.68 16 7 C 0.52 24.18 6.93 87.66 0.61 24.78 16 8 O -0.59 -30.27 15.23 -3.02 -0.05 -30.32 16 9 C 0.03 1.62 2.22 -13.03 -0.03 1.59 16 10 H 0.07 3.20 4.57 -2.39 -0.01 3.19 16 11 C -0.51 -28.24 8.24 25.60 0.21 -28.03 16 12 H 0.03 1.80 7.69 -2.91 -0.02 1.77 16 13 C 0.03 1.51 5.47 84.65 0.46 1.97 16 14 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 15 Si 0.93 39.43 26.93 68.60 1.85 41.28 16 16 H -0.24 -8.94 7.11 99.48 0.71 -8.23 16 17 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.24 -9.58 6.81 99.48 0.68 -8.90 16 19 C -0.06 -2.91 4.53 -19.87 -0.09 -3.00 16 20 C -0.15 -5.56 9.67 22.27 0.22 -5.34 16 21 C -0.12 -3.92 10.05 22.27 0.22 -3.70 16 22 C -0.13 -4.19 10.05 22.27 0.22 -3.96 16 23 C -0.14 -5.10 10.05 22.27 0.22 -4.88 16 24 C -0.10 -4.69 8.05 22.27 0.18 -4.51 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.05 0.96 6.57 -2.39 -0.02 0.94 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.97 6.57 -2.39 -0.02 1.95 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.41 13.62 8.47 -92.71 -0.79 12.83 16 37 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.13 4.28 7.96 -2.91 -0.02 4.26 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 42 H 0.08 4.37 7.44 -2.91 -0.02 4.35 16 Total: -1.00 -70.09 344.26 3.83 -66.26 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: 0.18 Total: 36.53 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 4.12 Total: -28.83 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -2.27 Total: -84.92 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.05 Total: -30.32 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.85 Total: 41.28 kcal Total: -70.09 3.83 -66.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530977282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.532 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds