Wall clock time and date at job start Mon Mar 30 2020 02:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47537 * 2 1 4 4 C 1.38254 * 120.00208 * 265.02681 * 3 2 1 5 5 C 1.38217 * 119.99966 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.00127 * 359.97438 * 5 4 3 7 7 C 1.38215 * 119.99576 * 359.74844 * 6 5 4 8 8 C 1.38213 * 119.99720 * 84.99914 * 3 2 1 9 9 C 1.50705 * 120.00292 * 0.02562 * 8 3 2 10 10 C 1.52994 * 109.46849 * 84.99964 * 9 8 3 11 11 N 1.46904 * 109.47076 * 180.02562 * 10 9 8 12 12 C 1.47960 * 110.99975 * 190.00073 * 11 10 9 13 13 C 1.53940 * 86.18020 * 222.41827 * 12 11 10 14 14 O 1.42900 * 113.73337 * 269.26005 * 13 12 11 15 15 C 1.50694 * 113.73364 * 138.08016 * 13 12 11 16 16 H 1.08000 * 120.00563 * 1.89939 * 15 13 12 17 17 C 1.37885 * 119.99902 * 181.90102 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.48189 * 111.06803 * 90.56485 * 11 10 9 24 24 H 1.09007 * 109.47145 * 300.00117 * 1 2 3 25 25 H 1.09001 * 109.46918 * 59.99746 * 1 2 3 26 26 H 1.08998 * 109.47662 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47451 * 240.00333 * 2 1 3 28 28 H 1.08998 * 109.47270 * 119.99889 * 2 1 3 29 29 H 1.07996 * 120.00141 * 359.97324 * 4 3 2 30 30 H 1.08006 * 119.99914 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.99847 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.99619 * 180.27856 * 7 6 5 33 33 H 1.08994 * 109.46817 * 325.00065 * 9 8 3 34 34 H 1.08995 * 109.46793 * 205.00029 * 9 8 3 35 35 H 1.09003 * 109.47110 * 60.00320 * 10 9 8 36 36 H 1.09005 * 109.47409 * 300.00449 * 10 9 8 37 37 H 1.09000 * 113.75922 * 108.10132 * 12 11 10 38 38 H 1.08996 * 113.85941 * 336.74802 * 12 11 10 39 39 H 0.96699 * 113.99865 * 178.10203 * 14 13 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.08996 * 113.76245 * 23.24297 * 23 11 10 42 42 H 1.08999 * 113.82580 * 251.80952 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0379 -1.1928 5 6 2.8210 3.3412 -1.1928 6 6 2.9526 4.0279 0.0000 7 6 2.6189 3.4128 1.1919 8 6 2.1644 2.1070 1.1924 9 6 1.8064 1.4344 2.4927 10 6 3.0040 0.6255 2.9949 11 7 2.6550 -0.0307 4.2620 12 6 3.8514 -0.6239 4.8992 13 6 2.9576 -1.8384 5.2086 14 8 2.2970 -1.7590 6.4733 15 6 3.6369 -3.1645 4.9830 16 1 4.6684 -3.1958 4.6647 17 6 2.9414 -4.3382 5.1830 18 7 1.6853 -4.3003 5.5711 19 14 3.7832 -5.9820 4.9026 20 1 2.8267 -7.0825 5.1847 21 1 4.2386 -6.0708 3.4920 22 1 4.9536 -6.0997 5.8090 23 6 2.0871 -1.3788 4.0250 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2575 1.5017 -2.1245 30 1 3.0779 3.8232 -2.1246 31 1 3.3127 5.0461 0.0000 32 1 2.7175 3.9507 2.1233 33 1 0.9582 0.7682 2.3356 34 1 1.5427 2.1903 3.2322 35 1 3.8523 1.2918 3.1520 36 1 3.2679 -0.1304 2.2553 37 1 4.1873 -0.0882 5.7870 38 1 4.6606 -0.8405 4.2018 39 1 1.7120 -2.5062 6.6590 40 1 1.1960 -5.1260 5.7114 41 1 2.3781 -1.8163 3.0701 42 1 1.0160 -1.4452 4.2159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559779688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:05 Heat of formation + Delta-G solvation = -7.120250 kcal Electronic energy + Delta-G solvation = -21395.712415 eV Core-core repulsion = 18340.929889 eV Total energy + Delta-G solvation = -3054.782526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.79964 -38.77360 -34.86240 -34.04904 -32.75085 -32.05905 -29.72448 -29.00576 -26.63898 -25.07325 -24.53894 -23.66587 -21.95652 -20.94355 -20.18569 -18.58900 -17.18638 -16.35651 -15.94450 -15.31741 -15.09894 -14.71454 -14.31203 -14.04456 -13.80821 -13.63516 -13.35565 -12.95235 -12.90966 -12.75639 -12.04255 -11.93624 -11.79452 -11.69369 -11.40216 -11.29658 -11.17591 -10.99243 -10.81928 -10.73418 -10.49899 -10.39791 -10.19844 -9.92106 -9.26249 -8.76667 -8.63127 -8.50011 -8.19644 -7.76549 -6.24984 -4.34875 1.39407 1.42462 3.21132 3.26624 3.29203 3.77859 4.26129 4.69699 4.78945 4.89737 4.98409 5.00318 5.14261 5.21933 5.31912 5.45387 5.53411 5.56407 5.59635 5.67222 5.90847 5.92119 5.97071 5.98835 6.05841 6.08620 6.16945 6.23117 6.28596 6.33833 6.47280 6.52116 6.54760 6.59172 6.71679 6.80715 7.05796 7.06492 7.24068 7.38301 7.76779 8.00437 8.04068 8.66646 9.35089 9.63762 10.80801 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.004269 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.821825 B = 6557.187501 C = 7028.792042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.075 4.075 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.127 4.127 7 C -0.115 4.115 8 C -0.070 4.070 9 C -0.076 4.076 10 C 0.028 3.972 11 N -0.481 5.481 12 C 0.009 3.991 13 C 0.244 3.756 14 O -0.572 6.572 15 C -0.539 4.539 16 H 0.064 0.936 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.901 3.099 20 H -0.285 1.285 21 H -0.276 1.276 22 H -0.274 1.274 23 C -0.011 4.011 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.387 0.613 40 H 0.271 0.729 41 H 0.058 0.942 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 10.910 -11.895 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.075 4.075 4 C -0.137 4.137 5 C -0.146 4.146 6 C -0.145 4.145 7 C -0.133 4.133 8 C -0.071 4.071 9 C -0.113 4.113 10 C -0.101 4.101 11 N -0.203 5.203 12 C -0.120 4.120 13 C 0.203 3.797 14 O -0.383 6.383 15 C -0.577 4.577 16 H 0.082 0.918 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.729 3.271 20 H -0.210 1.210 21 H -0.201 1.201 22 H -0.200 1.200 23 C -0.140 4.140 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.241 0.759 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.692 11.844 -11.460 16.495 hybrid contribution 0.632 -1.846 -0.937 2.165 sum -0.060 9.998 -12.397 15.926 Atomic orbital electron populations 1.21730 0.94681 1.01931 1.01889 1.20643 0.96363 0.92654 1.03323 1.19821 0.98839 0.96265 0.92619 1.21004 1.00176 0.95170 0.97379 1.21054 1.00795 0.94920 0.97868 1.21080 1.00922 0.99771 0.92692 1.21082 0.99494 0.94681 0.98080 1.19900 0.98264 0.93988 0.94944 1.20553 0.98920 0.99291 0.92548 1.22578 0.96537 0.97858 0.93164 1.68498 1.17240 1.17572 1.17009 1.24093 0.93193 0.96426 0.98241 1.19746 0.87780 0.90788 0.81419 1.86044 1.64497 1.51073 1.36651 1.21623 0.98796 0.90815 1.46501 0.91806 1.25041 0.94664 0.99581 0.93702 1.69421 1.08874 1.28741 1.46713 0.86503 0.79386 0.82411 0.78843 1.21009 1.20095 1.19962 1.24761 1.00880 0.87410 1.00912 0.92282 0.92977 0.92193 0.91342 0.90083 0.86434 0.86531 0.86455 0.86114 0.90577 0.90675 0.92061 0.94242 0.90777 0.91882 0.75865 0.91908 0.92361 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.72 37.15 0.36 -1.35 16 2 C -0.09 -1.18 5.38 -27.89 -0.15 -1.33 16 3 C -0.08 -0.99 5.13 -104.63 -0.54 -1.53 16 4 C -0.12 -1.40 9.68 -39.58 -0.38 -1.78 16 5 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 6 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 7 C -0.12 -1.44 9.68 -39.58 -0.38 -1.83 16 8 C -0.07 -0.97 5.13 -104.62 -0.54 -1.51 16 9 C -0.08 -1.15 4.97 -27.88 -0.14 -1.28 16 10 C 0.03 0.48 4.61 -3.83 -0.02 0.46 16 11 N -0.48 -10.03 6.16 -238.02 -1.47 -11.50 16 12 C 0.01 0.20 7.34 -2.76 -0.02 0.18 16 13 C 0.24 6.19 1.40 -90.83 -0.13 6.06 16 14 O -0.57 -15.50 13.48 -35.23 -0.48 -15.98 16 15 C -0.54 -14.40 8.61 -34.44 -0.30 -14.70 16 16 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 17 C 0.07 1.90 5.40 -17.82 -0.10 1.80 16 18 N -0.90 -23.96 11.20 55.43 0.62 -23.34 16 19 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.01 -0.24 7.37 -2.63 -0.02 -0.26 16 24 H 0.06 0.73 6.80 -51.92 -0.35 0.38 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.78 8.05 -51.93 -0.42 0.37 16 28 H 0.08 1.18 5.62 -51.93 -0.29 0.89 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.08 1.19 5.62 -51.93 -0.29 0.90 16 34 H 0.07 1.13 8.05 -51.93 -0.42 0.72 16 35 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.04 0.70 6.05 -51.93 -0.31 0.39 16 37 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.06 1.32 7.88 -51.93 -0.41 0.91 16 39 H 0.39 10.62 6.60 45.56 0.30 10.92 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.06 1.32 7.44 -51.93 -0.39 0.94 16 42 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -27.69 337.32 -10.33 -38.02 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -5.93 Total: 13.03 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.14 Total: -20.66 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: -0.85 Total: -34.84 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.48 Total: -15.98 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.69 -10.33 -38.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559779688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.902 kcal (2) G-P(sol) polarization free energy of solvation -27.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds