Wall clock time and date at job start Mon Mar 30 2020 02:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47537 * 2 1 4 4 C 1.38254 * 120.00208 * 265.02681 * 3 2 1 5 5 C 1.38217 * 119.99966 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.00127 * 359.97438 * 5 4 3 7 7 C 1.38215 * 119.99576 * 359.74844 * 6 5 4 8 8 C 1.38213 * 119.99720 * 84.99914 * 3 2 1 9 9 C 1.50705 * 120.00292 * 0.02562 * 8 3 2 10 10 C 1.52994 * 109.46849 * 84.99964 * 9 8 3 11 11 N 1.46904 * 109.47076 * 180.02562 * 10 9 8 12 12 C 1.47960 * 110.99975 * 190.00073 * 11 10 9 13 13 C 1.53940 * 86.18020 * 222.41827 * 12 11 10 14 14 O 1.42900 * 113.73337 * 269.26005 * 13 12 11 15 15 C 1.50694 * 113.73364 * 138.08016 * 13 12 11 16 16 H 1.08000 * 120.00563 * 1.89939 * 15 13 12 17 17 C 1.37885 * 119.99902 * 181.90102 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.48189 * 111.06803 * 90.56485 * 11 10 9 24 24 H 1.09007 * 109.47145 * 300.00117 * 1 2 3 25 25 H 1.09001 * 109.46918 * 59.99746 * 1 2 3 26 26 H 1.08998 * 109.47662 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47451 * 240.00333 * 2 1 3 28 28 H 1.08998 * 109.47270 * 119.99889 * 2 1 3 29 29 H 1.07996 * 120.00141 * 359.97324 * 4 3 2 30 30 H 1.08006 * 119.99914 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.99847 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.99619 * 180.27856 * 7 6 5 33 33 H 1.08994 * 109.46817 * 325.00065 * 9 8 3 34 34 H 1.08995 * 109.46793 * 205.00029 * 9 8 3 35 35 H 1.09003 * 109.47110 * 60.00320 * 10 9 8 36 36 H 1.09005 * 109.47409 * 300.00449 * 10 9 8 37 37 H 1.09000 * 113.75922 * 108.10132 * 12 11 10 38 38 H 1.08996 * 113.85941 * 336.74802 * 12 11 10 39 39 H 0.96699 * 113.99865 * 178.10203 * 14 13 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.08996 * 113.76245 * 23.24297 * 23 11 10 42 42 H 1.08999 * 113.82580 * 251.80952 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0379 -1.1928 5 6 2.8210 3.3412 -1.1928 6 6 2.9526 4.0279 0.0000 7 6 2.6189 3.4128 1.1919 8 6 2.1644 2.1070 1.1924 9 6 1.8064 1.4344 2.4927 10 6 3.0040 0.6255 2.9949 11 7 2.6550 -0.0307 4.2620 12 6 3.8514 -0.6239 4.8992 13 6 2.9576 -1.8384 5.2086 14 8 2.2970 -1.7590 6.4733 15 6 3.6369 -3.1645 4.9830 16 1 4.6684 -3.1958 4.6647 17 6 2.9414 -4.3382 5.1830 18 7 1.6853 -4.3003 5.5711 19 14 3.7832 -5.9820 4.9026 20 1 2.8267 -7.0825 5.1847 21 1 4.2386 -6.0708 3.4920 22 1 4.9536 -6.0997 5.8090 23 6 2.0871 -1.3788 4.0250 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2575 1.5017 -2.1245 30 1 3.0779 3.8232 -2.1246 31 1 3.3127 5.0461 0.0000 32 1 2.7175 3.9507 2.1233 33 1 0.9582 0.7682 2.3356 34 1 1.5427 2.1903 3.2322 35 1 3.8523 1.2918 3.1520 36 1 3.2679 -0.1304 2.2553 37 1 4.1873 -0.0882 5.7870 38 1 4.6606 -0.8405 4.2018 39 1 1.7120 -2.5062 6.6590 40 1 1.1960 -5.1260 5.7114 41 1 2.3781 -1.8163 3.0701 42 1 1.0160 -1.4452 4.2159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559779688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:05 Heat of formation + Delta-G solvation = -24.218356 kcal Electronic energy + Delta-G solvation = -21396.453845 eV Core-core repulsion = 18340.929889 eV Total energy + Delta-G solvation = -3055.523955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.02739 -40.28873 -36.50780 -35.22923 -34.14992 -33.96031 -30.87973 -30.14405 -28.34617 -26.90101 -26.04500 -24.70454 -23.18036 -22.21619 -21.21001 -20.48129 -19.18173 -17.36831 -17.15581 -16.94697 -16.76881 -16.05665 -15.88495 -15.64364 -15.14490 -14.68335 -14.56647 -14.27674 -14.09229 -14.00589 -13.71381 -13.42954 -13.19962 -13.09091 -12.84136 -12.77599 -12.68796 -12.33113 -12.29468 -12.17596 -12.09587 -11.80731 -11.53641 -11.40200 -11.13622 -10.62711 -10.12846 -9.69864 -9.59652 -9.40922 -8.24212 -6.42384 0.46880 0.51713 1.42259 1.43765 1.51761 2.37128 2.84231 2.96560 3.14592 3.81275 3.88583 3.94415 3.99498 4.12857 4.18555 4.28195 4.31342 4.38245 4.43489 4.48589 4.53919 4.59318 4.66109 4.69328 4.73308 4.88151 4.89765 5.00864 5.06618 5.13346 5.13911 5.18866 5.28151 5.38384 5.41830 5.53108 5.64465 5.65245 5.74231 5.83993 5.99352 6.17116 6.32221 6.62290 7.30559 7.51165 8.80434 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.004269 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.821825 B = 6557.187501 C = 7028.792042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.088 4.088 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.128 4.128 7 C -0.125 4.125 8 C -0.090 4.090 9 C -0.064 4.064 10 C 0.033 3.967 11 N -0.482 5.482 12 C 0.017 3.983 13 C 0.217 3.783 14 O -0.584 6.584 15 C -0.564 4.564 16 H 0.062 0.938 17 C 0.030 3.970 18 N -0.917 5.917 19 Si 0.964 3.036 20 H -0.279 1.279 21 H -0.270 1.270 22 H -0.273 1.273 23 C 0.005 3.995 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.382 0.618 40 H 0.274 0.726 41 H 0.056 0.944 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 11.710 -13.786 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.088 4.088 4 C -0.143 4.143 5 C -0.144 4.144 6 C -0.146 4.146 7 C -0.143 4.143 8 C -0.090 4.090 9 C -0.102 4.102 10 C -0.096 4.096 11 N -0.204 5.204 12 C -0.112 4.112 13 C 0.176 3.824 14 O -0.394 6.394 15 C -0.602 4.602 16 H 0.081 0.919 17 C -0.170 4.170 18 N -0.557 5.557 19 Si 0.789 3.211 20 H -0.204 1.204 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.125 4.125 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.146 0.854 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.235 0.765 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.129 12.662 -13.355 18.404 hybrid contribution 0.378 -2.027 -0.378 2.096 sum 0.508 10.635 -13.733 17.377 Atomic orbital electron populations 1.21700 0.94197 1.02037 1.01947 1.20611 0.96823 0.92762 1.02672 1.19920 0.99441 0.96315 0.93132 1.21274 0.99775 0.95811 0.97485 1.21441 0.99372 0.94538 0.99006 1.21412 1.00100 1.00918 0.92178 1.21268 0.99507 0.94292 0.99266 1.19803 1.00159 0.94821 0.94244 1.20377 0.97486 0.98714 0.93611 1.22582 0.97942 0.97772 0.91276 1.68434 1.16653 1.16360 1.18975 1.24032 0.93445 0.95058 0.98671 1.20130 0.89072 0.91838 0.81312 1.86027 1.64595 1.50841 1.37963 1.21879 0.98993 0.91960 1.47357 0.91949 1.25775 0.95220 1.02733 0.93276 1.69502 1.09818 1.29626 1.46791 0.85515 0.78354 0.78356 0.78849 1.20449 1.19471 1.19775 1.24466 0.99473 0.88650 0.99886 0.93511 0.91545 0.92075 0.90089 0.92540 0.84579 0.83716 0.83935 0.85400 0.91700 0.90887 0.91054 0.94641 0.90627 0.90718 0.76537 0.91666 0.92536 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.72 71.98 0.70 -2.59 16 2 C -0.09 -2.29 5.38 29.85 0.16 -2.13 16 3 C -0.09 -2.21 5.13 -19.87 -0.10 -2.31 16 4 C -0.13 -2.63 9.68 22.27 0.22 -2.41 16 5 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 6 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 7 C -0.13 -2.93 9.68 22.27 0.22 -2.71 16 8 C -0.09 -2.40 5.13 -19.86 -0.10 -2.50 16 9 C -0.06 -1.95 4.97 29.85 0.15 -1.81 16 10 C 0.03 1.13 4.61 86.30 0.40 1.53 16 11 N -0.48 -20.25 6.16 -910.15 -5.61 -25.85 16 12 C 0.02 0.74 7.34 86.41 0.63 1.37 16 13 C 0.22 11.21 1.40 -10.89 -0.02 11.19 16 14 O -0.58 -32.41 13.48 -148.98 -2.01 -34.42 16 15 C -0.56 -30.39 8.61 25.60 0.22 -30.17 16 16 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 17 C 0.03 1.59 5.40 84.66 0.46 2.05 16 18 N -0.92 -49.51 11.20 21.45 0.24 -49.27 16 19 Si 0.96 41.57 29.54 68.60 2.03 43.60 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 C 0.00 0.22 7.37 86.37 0.64 0.86 16 24 H 0.05 1.18 6.80 -2.38 -0.02 1.16 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.77 8.05 -2.38 -0.02 1.75 16 28 H 0.06 1.68 5.62 -2.39 -0.01 1.66 16 29 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 33 H 0.06 2.09 5.62 -2.39 -0.01 2.08 16 34 H 0.07 2.21 8.05 -2.39 -0.02 2.19 16 35 H 0.07 2.31 8.08 -2.39 -0.02 2.29 16 36 H 0.04 1.26 6.05 -2.38 -0.01 1.25 16 37 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.07 3.09 7.88 -2.39 -0.02 3.07 16 39 H 0.38 21.58 6.60 -74.06 -0.49 21.09 16 40 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 41 H 0.06 2.64 7.44 -2.39 -0.02 2.62 16 42 H 0.05 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -58.67 337.32 -0.82 -59.49 By element: Atomic # 1 Polarization: 39.94 SS G_CDS: 0.52 Total: 40.45 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 4.01 Total: -34.00 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -5.36 Total: -75.13 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -2.01 Total: -34.42 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -58.67 -0.82 -59.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559779688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.272 kcal (2) G-P(sol) polarization free energy of solvation -58.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds