Wall clock time and date at job start Mon Mar 30 2020 01:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.48396 * 2 1 4 4 N 1.46508 * 109.46644 * 305.02641 * 3 2 1 5 5 C 1.38855 * 119.99926 * 180.02562 * 4 3 2 6 6 C 1.39569 * 119.84192 * 359.72273 * 5 4 3 7 7 C 1.36337 * 120.16197 * 179.72492 * 6 5 4 8 8 C 1.40894 * 119.83280 * 0.54565 * 7 6 5 9 9 C 1.41135 * 120.15206 * 179.70471 * 8 7 6 10 10 H 1.07998 * 120.00017 * 204.62975 * 9 8 7 11 11 C 1.39868 * 120.00396 * 24.62204 * 9 8 7 12 12 N 1.30900 * 119.99549 * 17.97330 * 11 9 8 13 13 Si 1.86800 * 120.00249 * 197.96547 * 11 9 8 14 14 H 1.48500 * 109.46917 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47111 * 120.00351 * 13 11 9 16 16 H 1.48497 * 109.47104 * 240.00594 * 13 11 9 17 17 C 1.40882 * 119.68898 * 359.72780 * 8 7 6 18 18 C 1.36337 * 119.83584 * 359.97438 * 17 8 7 19 19 C 1.53095 * 109.48106 * 120.02261 * 2 1 3 20 20 C 1.53176 * 109.16578 * 62.38556 * 19 2 1 21 21 C 1.53179 * 109.03702 * 56.97928 * 20 19 2 22 22 C 1.53093 * 109.16286 * 303.02424 * 21 20 19 23 23 O 1.42902 * 109.41897 * 57.60696 * 22 21 20 24 24 H 1.08994 * 109.47141 * 60.00014 * 1 2 3 25 25 H 1.08998 * 109.47353 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46963 * 299.99945 * 1 2 3 27 27 H 1.08995 * 109.47498 * 185.02457 * 3 2 1 28 28 H 1.08999 * 109.47111 * 65.02076 * 3 2 1 29 29 H 0.97000 * 119.99677 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.92093 * 359.97438 * 6 5 4 31 31 H 1.08003 * 120.08837 * 180.27756 * 7 6 5 32 32 H 0.97000 * 119.99705 * 180.02562 * 12 11 9 33 33 H 1.07996 * 120.08004 * 179.97438 * 17 8 7 34 34 H 1.08002 * 119.91432 * 179.97438 * 18 17 8 35 35 H 1.09002 * 109.52166 * 182.28994 * 19 2 1 36 36 H 1.09003 * 109.52314 * 302.41377 * 19 2 1 37 37 H 1.09002 * 109.54181 * 176.84891 * 20 19 2 38 38 H 1.09002 * 109.53824 * 297.02272 * 20 19 2 39 39 H 1.08999 * 109.52174 * 62.92527 * 21 20 19 40 40 H 1.08997 * 109.52117 * 183.05395 * 21 20 19 41 41 H 1.08996 * 109.47948 * 177.59006 * 22 21 20 42 42 H 1.09007 * 109.47766 * 297.61498 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 7 1.4557 2.1671 -1.1312 5 6 1.7741 3.5025 -1.3393 6 6 2.6469 4.1528 -0.4656 7 6 2.9684 5.4623 -0.6670 8 6 2.4082 6.1623 -1.7539 9 6 2.7315 7.5198 -1.9651 10 1 2.0502 8.1592 -2.5068 11 6 3.9341 8.0372 -1.4729 12 7 4.9061 7.2273 -1.1369 13 14 4.1534 9.8838 -1.2951 14 1 2.9160 10.5741 -1.7395 15 1 4.4213 10.2158 0.1272 16 1 5.2968 10.3292 -2.1314 17 6 1.5235 5.5011 -2.6284 18 6 1.2158 4.1896 -2.4182 19 6 2.0405 -0.7221 1.2497 20 6 1.5760 -2.1813 1.2123 21 6 2.0769 -2.8322 -0.0806 22 6 1.5650 -2.0285 -1.2789 23 8 2.0068 -0.6742 -1.1663 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 3.1265 1.4435 -0.0900 28 1 1.7523 1.9297 0.9315 29 1 0.8468 1.7138 -1.7350 30 1 3.0718 3.6162 0.3699 31 1 3.6474 5.9630 0.0073 32 1 5.7400 7.5861 -0.7951 33 1 1.0901 6.0317 -3.4632 34 1 0.5374 3.6816 -3.0875 35 1 3.1298 -0.6871 1.2711 36 1 1.6428 -0.2349 2.1400 37 1 1.9828 -2.7155 2.0709 38 1 0.4870 -2.2180 1.2425 39 1 3.1669 -2.8398 -0.0861 40 1 1.7052 -3.8550 -0.1412 41 1 1.9537 -2.4623 -2.2002 42 1 0.4754 -2.0554 -1.2958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652146357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:30 Heat of formation + Delta-G solvation = -34.821248 kcal Electronic energy + Delta-G solvation = -21151.773361 eV Core-core repulsion = 18095.789630 eV Total energy + Delta-G solvation = -3055.983731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.12714 -37.79416 -35.23033 -33.80766 -33.34379 -31.77902 -29.39842 -28.69862 -28.13832 -26.15112 -24.41996 -23.66475 -22.00752 -20.84751 -19.79416 -19.24676 -17.14416 -16.68222 -16.25814 -15.63048 -15.11609 -14.87804 -14.75210 -14.49493 -13.81123 -13.46695 -13.26919 -12.85727 -12.80952 -12.53332 -12.46407 -12.23706 -11.98120 -11.68117 -11.60402 -11.33352 -11.16770 -11.10035 -10.99981 -10.81642 -10.72257 -10.41793 -10.10135 -9.62878 -9.46198 -9.22072 -9.15467 -8.45135 -7.42418 -6.58072 -6.30127 -3.96611 2.95458 3.16434 3.19066 3.24401 3.40890 3.69530 4.10150 4.28521 4.60127 4.62527 4.68443 4.82431 4.89199 4.93174 5.06883 5.23378 5.32863 5.44443 5.54746 5.63217 5.70736 5.78195 5.83394 5.87394 5.89755 5.97254 6.06267 6.11269 6.27562 6.34933 6.39736 6.99763 7.00964 7.24918 7.27266 7.42456 7.62765 7.76031 7.91798 8.21758 8.36646 8.57159 8.79047 8.88312 9.12403 9.22341 10.43429 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041333 B = 0.003372 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.256488 B = 8301.364479 C = 8592.041385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.107 3.893 3 C 0.155 3.845 4 N -0.755 5.755 5 C 0.097 3.903 6 C -0.166 4.166 7 C -0.123 4.123 8 C 0.072 3.928 9 C -0.467 4.467 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.808 5.808 13 Si 0.901 3.099 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.278 1.278 17 C -0.185 4.185 18 C -0.160 4.160 19 C -0.142 4.142 20 C -0.121 4.121 21 C -0.156 4.156 22 C 0.056 3.944 23 O -0.364 6.364 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.386 0.614 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.275 0.725 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 -16.860 4.867 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.067 3.933 3 C 0.030 3.970 4 N -0.391 5.391 5 C -0.001 4.001 6 C -0.188 4.188 7 C -0.143 4.143 8 C 0.069 3.931 9 C -0.498 4.498 10 H 0.090 0.910 11 C -0.141 4.141 12 N -0.436 5.436 13 Si 0.727 3.273 14 H -0.187 1.187 15 H -0.200 1.200 16 H -0.203 1.203 17 C -0.205 4.205 18 C -0.183 4.183 19 C -0.180 4.180 20 C -0.159 4.159 21 C -0.194 4.194 22 C -0.021 4.021 23 O -0.283 6.283 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.220 0.780 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.126 -16.766 4.972 18.223 hybrid contribution -0.075 0.420 0.055 0.430 sum -5.200 -16.346 5.027 17.875 Atomic orbital electron populations 1.22397 0.95609 1.01934 1.03387 1.21730 0.93370 0.92532 0.85658 1.20960 0.97848 0.87329 0.90898 1.43800 1.54518 1.09023 1.31765 1.17362 1.00906 0.83773 0.98024 1.20085 1.02363 0.96196 1.00170 1.20926 1.01866 0.93156 0.98380 1.17487 0.91702 0.93289 0.90573 1.19384 1.03033 0.95129 1.32300 0.90986 1.25786 0.95227 0.99632 0.93421 1.69872 1.03416 1.36466 1.33839 0.86383 0.78904 0.83544 0.78511 1.18676 1.20021 1.20330 1.20536 1.05744 0.93745 1.00520 1.19792 1.04378 0.95502 0.98588 1.22119 1.02110 0.95749 0.98049 1.21601 1.00973 0.95637 0.97686 1.22185 1.02035 0.99388 0.95760 1.22559 0.98631 0.82837 0.98063 1.88090 1.73368 1.23902 1.42946 0.91457 0.92231 0.91337 0.92786 0.92249 0.78034 0.89507 0.86440 0.91461 0.89124 0.89688 0.90790 0.90674 0.91624 0.91652 0.91093 0.91230 0.89163 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 7.71 37.16 0.29 -1.65 16 2 C 0.11 1.33 0.78 -90.57 -0.07 1.26 16 3 C 0.16 2.44 4.06 -4.04 -0.02 2.43 16 4 N -0.75 -13.84 5.33 -58.50 -0.31 -14.15 16 5 C 0.10 2.18 6.67 -83.69 -0.56 1.62 16 6 C -0.17 -4.01 9.23 -39.77 -0.37 -4.37 16 7 C -0.12 -3.31 8.64 -39.26 -0.34 -3.65 16 8 C 0.07 2.00 5.57 -106.79 -0.60 1.41 16 9 C -0.47 -12.97 9.03 -37.87 -0.34 -13.31 16 10 H 0.07 1.94 7.91 -52.49 -0.41 1.52 16 11 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 12 N -0.81 -21.92 10.96 55.54 0.61 -21.31 16 13 Si 0.90 19.58 29.60 -169.99 -5.03 14.55 16 14 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 C -0.19 -4.72 9.74 -39.27 -0.38 -5.10 16 18 C -0.16 -3.73 9.82 -39.77 -0.39 -4.12 16 19 C -0.14 -1.46 4.92 -26.59 -0.13 -1.59 16 20 C -0.12 -1.03 5.72 -26.55 -0.15 -1.18 16 21 C -0.16 -1.33 6.14 -26.59 -0.16 -1.49 16 22 C 0.06 0.56 6.51 37.21 0.24 0.80 16 23 O -0.36 -4.97 10.18 -35.23 -0.36 -5.33 16 24 H 0.07 0.81 6.57 -51.93 -0.34 0.47 16 25 H 0.06 0.56 4.98 -51.93 -0.26 0.30 16 26 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 27 H 0.05 0.93 7.94 -51.93 -0.41 0.52 16 28 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 29 H 0.39 6.58 6.99 -40.82 -0.29 6.29 16 30 H 0.09 1.91 6.68 -52.48 -0.35 1.56 16 31 H 0.12 3.26 6.16 -52.48 -0.32 2.94 16 32 H 0.27 6.80 8.30 -40.82 -0.34 6.46 16 33 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.08 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.52 6.62 -51.93 -0.34 0.17 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.47 6.35 -51.92 -0.33 0.14 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -29.35 326.57 -9.65 -39.00 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.41 Total: 9.42 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -3.07 Total: -27.10 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.30 Total: -35.45 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.36 Total: -5.33 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.35 -9.65 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652146357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.175 kcal (2) G-P(sol) polarization free energy of solvation -29.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds