Wall clock time and date at job start Mon Mar 30 2020 01:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.48396 * 2 1 4 4 N 1.46508 * 109.46644 * 305.02641 * 3 2 1 5 5 C 1.38855 * 119.99926 * 180.02562 * 4 3 2 6 6 C 1.39569 * 119.84192 * 359.72273 * 5 4 3 7 7 C 1.36337 * 120.16197 * 179.72492 * 6 5 4 8 8 C 1.40894 * 119.83280 * 0.54565 * 7 6 5 9 9 C 1.41135 * 120.15206 * 179.70471 * 8 7 6 10 10 H 1.07998 * 120.00017 * 204.62975 * 9 8 7 11 11 C 1.39868 * 120.00396 * 24.62204 * 9 8 7 12 12 N 1.30900 * 119.99549 * 17.97330 * 11 9 8 13 13 Si 1.86800 * 120.00249 * 197.96547 * 11 9 8 14 14 H 1.48500 * 109.46917 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47111 * 120.00351 * 13 11 9 16 16 H 1.48497 * 109.47104 * 240.00594 * 13 11 9 17 17 C 1.40882 * 119.68898 * 359.72780 * 8 7 6 18 18 C 1.36337 * 119.83584 * 359.97438 * 17 8 7 19 19 C 1.53095 * 109.48106 * 120.02261 * 2 1 3 20 20 C 1.53176 * 109.16578 * 62.38556 * 19 2 1 21 21 C 1.53179 * 109.03702 * 56.97928 * 20 19 2 22 22 C 1.53093 * 109.16286 * 303.02424 * 21 20 19 23 23 O 1.42902 * 109.41897 * 57.60696 * 22 21 20 24 24 H 1.08994 * 109.47141 * 60.00014 * 1 2 3 25 25 H 1.08998 * 109.47353 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46963 * 299.99945 * 1 2 3 27 27 H 1.08995 * 109.47498 * 185.02457 * 3 2 1 28 28 H 1.08999 * 109.47111 * 65.02076 * 3 2 1 29 29 H 0.97000 * 119.99677 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.92093 * 359.97438 * 6 5 4 31 31 H 1.08003 * 120.08837 * 180.27756 * 7 6 5 32 32 H 0.97000 * 119.99705 * 180.02562 * 12 11 9 33 33 H 1.07996 * 120.08004 * 179.97438 * 17 8 7 34 34 H 1.08002 * 119.91432 * 179.97438 * 18 17 8 35 35 H 1.09002 * 109.52166 * 182.28994 * 19 2 1 36 36 H 1.09003 * 109.52314 * 302.41377 * 19 2 1 37 37 H 1.09002 * 109.54181 * 176.84891 * 20 19 2 38 38 H 1.09002 * 109.53824 * 297.02272 * 20 19 2 39 39 H 1.08999 * 109.52174 * 62.92527 * 21 20 19 40 40 H 1.08997 * 109.52117 * 183.05395 * 21 20 19 41 41 H 1.08996 * 109.47948 * 177.59006 * 22 21 20 42 42 H 1.09007 * 109.47766 * 297.61498 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 7 1.4557 2.1671 -1.1312 5 6 1.7741 3.5025 -1.3393 6 6 2.6469 4.1528 -0.4656 7 6 2.9684 5.4623 -0.6670 8 6 2.4082 6.1623 -1.7539 9 6 2.7315 7.5198 -1.9651 10 1 2.0502 8.1592 -2.5068 11 6 3.9341 8.0372 -1.4729 12 7 4.9061 7.2273 -1.1369 13 14 4.1534 9.8838 -1.2951 14 1 2.9160 10.5741 -1.7395 15 1 4.4213 10.2158 0.1272 16 1 5.2968 10.3292 -2.1314 17 6 1.5235 5.5011 -2.6284 18 6 1.2158 4.1896 -2.4182 19 6 2.0405 -0.7221 1.2497 20 6 1.5760 -2.1813 1.2123 21 6 2.0769 -2.8322 -0.0806 22 6 1.5650 -2.0285 -1.2789 23 8 2.0068 -0.6742 -1.1663 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 3.1265 1.4435 -0.0900 28 1 1.7523 1.9297 0.9315 29 1 0.8468 1.7138 -1.7350 30 1 3.0718 3.6162 0.3699 31 1 3.6474 5.9630 0.0073 32 1 5.7400 7.5861 -0.7951 33 1 1.0901 6.0317 -3.4632 34 1 0.5374 3.6816 -3.0875 35 1 3.1298 -0.6871 1.2711 36 1 1.6428 -0.2349 2.1400 37 1 1.9828 -2.7155 2.0709 38 1 0.4870 -2.2180 1.2425 39 1 3.1669 -2.8398 -0.0861 40 1 1.7052 -3.8550 -0.1412 41 1 1.9537 -2.4623 -2.2002 42 1 0.4754 -2.0554 -1.2958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652146357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:29 Heat of formation + Delta-G solvation = -51.118377 kcal Electronic energy + Delta-G solvation = -21152.480058 eV Core-core repulsion = 18095.789630 eV Total energy + Delta-G solvation = -3056.690428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06891 -39.61409 -36.79993 -35.05075 -34.61555 -33.12184 -31.34684 -30.39118 -29.04674 -27.56559 -25.84703 -24.79808 -23.32432 -22.54373 -21.51177 -20.08990 -19.14283 -18.11773 -17.22660 -16.89537 -16.75752 -16.24942 -15.75617 -15.60024 -15.38844 -14.71012 -14.60331 -14.48917 -14.05343 -13.84247 -13.64181 -13.54543 -13.51754 -13.08563 -12.94872 -12.73601 -12.59877 -12.50716 -12.25650 -12.12660 -11.90696 -11.59124 -11.54370 -11.17627 -11.06964 -10.96776 -10.30752 -10.27977 -9.39829 -8.53749 -8.14295 -5.99180 1.11299 1.19203 1.40772 1.55368 1.59098 2.28571 2.76725 2.86186 2.91468 3.69989 3.85970 3.87448 3.91892 3.97435 4.11191 4.27310 4.44502 4.49695 4.50772 4.55527 4.64968 4.68617 4.77741 4.86822 4.93273 4.98851 5.04405 5.05773 5.12060 5.15689 5.20073 5.26428 5.29194 5.46482 5.48094 5.69513 5.81120 5.97412 6.19988 6.36840 6.41057 6.68535 6.88362 7.09718 7.15621 7.32558 8.49935 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041333 B = 0.003372 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.256488 B = 8301.364479 C = 8592.041385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.111 3.889 3 C 0.150 3.850 4 N -0.744 5.744 5 C 0.113 3.887 6 C -0.176 4.176 7 C -0.142 4.142 8 C 0.034 3.966 9 C -0.505 4.505 10 H 0.068 0.932 11 C 0.031 3.969 12 N -0.843 5.843 13 Si 0.978 3.022 14 H -0.260 1.260 15 H -0.266 1.266 16 H -0.269 1.269 17 C -0.194 4.194 18 C -0.167 4.167 19 C -0.142 4.142 20 C -0.118 4.118 21 C -0.153 4.153 22 C 0.049 3.951 23 O -0.395 6.395 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.395 0.605 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.282 0.718 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 -18.528 5.418 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.072 3.928 3 C 0.025 3.975 4 N -0.379 5.379 5 C 0.014 3.986 6 C -0.199 4.199 7 C -0.162 4.162 8 C 0.031 3.969 9 C -0.537 4.537 10 H 0.086 0.914 11 C -0.181 4.181 12 N -0.471 5.471 13 Si 0.799 3.201 14 H -0.184 1.184 15 H -0.191 1.191 16 H -0.194 1.194 17 C -0.214 4.214 18 C -0.189 4.189 19 C -0.180 4.180 20 C -0.156 4.156 21 C -0.191 4.191 22 C -0.027 4.027 23 O -0.315 6.315 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.231 0.769 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.202 -18.489 5.523 20.269 hybrid contribution 0.213 0.734 -0.143 0.777 sum -5.989 -17.756 5.379 19.495 Atomic orbital electron populations 1.22367 0.94265 1.03251 1.03065 1.21635 0.94212 0.90451 0.86499 1.21127 0.96775 0.89680 0.89951 1.43848 1.54060 1.07479 1.32509 1.17484 0.99028 0.85399 0.96736 1.20234 1.02903 0.95527 1.01203 1.20858 1.02506 0.94352 0.98500 1.17815 0.93293 0.94050 0.91700 1.19609 1.04074 0.95713 1.34274 0.91417 1.26632 0.94342 1.04599 0.92534 1.69935 1.03990 1.38664 1.34513 0.85233 0.78919 0.77105 0.78808 1.18407 1.19096 1.19395 1.20748 1.05395 0.94833 1.00427 1.20081 1.04710 0.94919 0.99223 1.22119 1.01495 0.97142 0.97230 1.21614 1.01676 0.94117 0.98162 1.22171 1.01468 1.00342 0.95090 1.22782 0.99445 0.81346 0.99156 1.88034 1.74110 1.25850 1.43471 0.92548 0.90137 0.90832 0.94633 0.91676 0.76933 0.87890 0.88278 0.90802 0.88471 0.86700 0.91885 0.89685 0.90252 0.90524 0.92092 0.88992 0.88601 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 7.71 71.98 0.55 -2.78 16 2 C 0.11 2.57 0.78 -10.76 -0.01 2.56 16 3 C 0.15 4.55 4.06 86.38 0.35 4.90 16 4 N -0.74 -26.27 5.33 -338.99 -1.81 -28.08 16 5 C 0.11 5.04 6.67 38.67 0.26 5.30 16 6 C -0.18 -8.61 9.23 22.15 0.20 -8.41 16 7 C -0.14 -7.91 8.64 22.48 0.19 -7.71 16 8 C 0.03 1.96 5.57 -21.27 -0.12 1.85 16 9 C -0.51 -29.06 9.03 23.38 0.21 -28.85 16 10 H 0.07 3.78 7.91 -2.91 -0.02 3.76 16 11 C 0.03 1.65 5.13 85.23 0.44 2.08 16 12 N -0.84 -47.08 10.96 21.82 0.24 -46.85 16 13 Si 0.98 40.89 29.60 68.60 2.03 42.92 16 14 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 15 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 16 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 17 C -0.19 -10.03 9.74 22.47 0.22 -9.81 16 18 C -0.17 -7.65 9.82 22.15 0.22 -7.44 16 19 C -0.14 -2.62 4.92 30.68 0.15 -2.47 16 20 C -0.12 -1.63 5.72 30.71 0.18 -1.45 16 21 C -0.15 -2.18 6.14 30.69 0.19 -1.99 16 22 C 0.05 0.86 6.51 72.01 0.47 1.33 16 23 O -0.39 -10.14 10.18 -148.98 -1.52 -11.66 16 24 H 0.06 1.21 6.57 -2.39 -0.02 1.20 16 25 H 0.08 1.22 4.98 -2.39 -0.01 1.21 16 26 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.04 1.22 7.94 -2.39 -0.02 1.20 16 28 H 0.07 1.92 7.92 -2.39 -0.02 1.90 16 29 H 0.40 12.71 6.99 -92.71 -0.65 12.06 16 30 H 0.10 4.57 6.68 -2.91 -0.02 4.55 16 31 H 0.10 5.78 6.16 -2.91 -0.02 5.77 16 32 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 33 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 34 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.90 6.62 -2.39 -0.02 0.89 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 0.95 6.35 -2.38 -0.02 0.93 16 Total: -1.00 -64.86 326.57 2.81 -62.05 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.36 Total: 34.49 kcal Atomic # 6 Polarization: -56.38 SS G_CDS: 3.50 Total: -52.88 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -1.57 Total: -74.92 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -1.52 Total: -11.66 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -64.86 2.81 -62.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652146357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.934 kcal (2) G-P(sol) polarization free energy of solvation -64.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds