Wall clock time and date at job start Mon Mar 30 2020 01:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47998 * 2 1 4 4 N 1.46497 * 109.47772 * 59.97234 * 3 2 1 5 5 C 1.38851 * 120.00293 * 180.02562 * 4 3 2 6 6 C 1.39571 * 119.84367 * 180.02562 * 5 4 3 7 7 C 1.36339 * 120.16309 * 179.97438 * 6 5 4 8 8 C 1.40890 * 119.83378 * 0.02562 * 7 6 5 9 9 C 1.41132 * 120.15121 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00271 * 334.87777 * 9 8 7 11 11 C 1.39871 * 120.00163 * 154.87848 * 9 8 7 12 12 N 1.30906 * 119.99610 * 334.18898 * 11 9 8 13 13 Si 1.86797 * 120.00223 * 154.18539 * 11 9 8 14 14 H 1.48499 * 109.47139 * 90.00565 * 13 11 9 15 15 H 1.48499 * 109.47101 * 329.99981 * 13 11 9 16 16 H 1.48508 * 109.46973 * 210.00201 * 13 11 9 17 17 C 1.40878 * 119.68924 * 0.27061 * 8 7 6 18 18 C 1.36344 * 119.83925 * 359.42053 * 17 8 7 19 19 C 1.53094 * 109.48186 * 239.97121 * 2 1 3 20 20 C 1.53177 * 109.16221 * 297.61502 * 19 2 1 21 21 C 1.53171 * 109.03822 * 303.02002 * 20 19 2 22 22 C 1.53093 * 109.16633 * 56.97926 * 21 20 19 23 23 O 1.42899 * 109.41300 * 302.39753 * 22 21 20 24 24 H 1.09000 * 109.47124 * 60.00265 * 1 2 3 25 25 H 1.09001 * 109.47510 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47723 * 300.00307 * 1 2 3 27 27 H 1.09007 * 109.46785 * 299.97180 * 3 2 1 28 28 H 1.09007 * 109.47043 * 179.97438 * 3 2 1 29 29 H 0.96998 * 119.99524 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.91729 * 0.02562 * 6 5 4 31 31 H 1.07995 * 120.08266 * 179.97438 * 7 6 5 32 32 H 0.96999 * 120.00334 * 354.23128 * 12 11 9 33 33 H 1.08005 * 120.08232 * 179.72848 * 17 8 7 34 34 H 1.08000 * 119.92180 * 180.27104 * 18 17 8 35 35 H 1.08994 * 109.51719 * 57.52168 * 19 2 1 36 36 H 1.08997 * 109.52220 * 177.64790 * 19 2 1 37 37 H 1.09000 * 109.54465 * 62.88486 * 20 19 2 38 38 H 1.09004 * 109.54189 * 183.06303 * 20 19 2 39 39 H 1.09003 * 109.52492 * 176.88926 * 21 20 19 40 40 H 1.09006 * 109.52326 * 297.07465 * 21 20 19 41 41 H 1.09005 * 109.47618 * 62.37474 * 22 21 20 42 42 H 1.09001 * 109.48062 * 182.40824 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 1.5515 2.1334 1.1958 5 6 1.8866 3.4629 1.4151 6 6 1.4197 4.1178 2.5557 7 6 1.7452 5.4230 2.7778 8 6 2.5546 6.1108 1.8522 9 6 2.8962 7.4618 2.0757 10 1 2.2590 8.0863 2.6842 11 6 4.0599 7.9920 1.5091 12 7 5.0648 7.2042 1.2204 13 14 4.1801 9.8239 1.1644 14 1 4.7413 10.5154 2.3527 15 1 2.8276 10.3622 0.8711 16 1 5.0673 10.0504 -0.0048 17 6 3.0172 5.4451 0.7000 18 6 2.6889 4.1379 0.4939 19 6 2.0405 -0.7223 -1.2496 20 6 1.5760 -2.1814 -1.2120 21 6 2.0768 -2.8321 0.0810 22 6 1.5649 -2.0284 1.2792 23 8 2.0067 -0.6741 1.1664 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6773 1.9561 -0.8903 28 1 3.1302 1.4422 0.0005 29 1 0.9938 1.6621 1.8343 30 1 0.7996 3.5891 3.2645 31 1 1.3828 5.9286 3.6606 32 1 5.0365 6.2687 1.4750 33 1 3.6344 5.9675 -0.0160 34 1 3.0464 3.6250 -0.3867 35 1 1.6419 -0.2358 -2.1398 36 1 3.1297 -0.6863 -1.2716 37 1 0.4870 -2.2182 -1.2405 38 1 1.9815 -2.7154 -2.0714 39 1 1.7043 -3.8547 0.1423 40 1 3.1668 -2.8397 0.0864 41 1 0.4753 -2.0551 1.2960 42 1 1.9536 -2.4621 2.2006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652146358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:34 Heat of formation + Delta-G solvation = -41.545836 kcal Electronic energy + Delta-G solvation = -21195.843376 eV Core-core repulsion = 18139.568045 eV Total energy + Delta-G solvation = -3056.275331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16789 -37.97232 -35.39962 -33.84893 -33.49304 -31.78239 -29.55504 -28.54199 -28.13249 -26.06543 -24.41198 -23.67569 -22.10779 -20.86174 -20.00827 -19.29692 -17.73975 -16.71824 -16.29586 -15.68111 -15.11062 -14.87979 -14.61292 -14.28635 -13.91761 -13.56482 -13.36988 -13.00704 -12.86233 -12.80000 -12.43266 -12.23014 -12.05560 -11.74752 -11.68232 -11.33073 -11.25141 -11.14777 -10.94284 -10.86564 -10.77818 -10.29998 -10.14908 -9.56043 -9.48857 -9.36319 -9.01589 -8.50401 -7.64878 -6.98328 -6.46046 -4.03174 2.96257 2.99834 3.26418 3.42070 3.46964 3.64457 4.18380 4.23300 4.56325 4.59227 4.65120 4.76460 4.84060 4.89784 5.03034 5.19931 5.29380 5.40772 5.51114 5.60107 5.67151 5.68664 5.75026 5.80234 5.84221 5.93873 5.99285 6.05538 6.20957 6.22035 6.25978 6.80569 6.88312 7.15040 7.20796 7.45220 7.53589 7.69893 7.95807 8.01465 8.28405 8.42205 8.54452 8.76344 9.01785 9.15126 10.30142 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040822 B = 0.003396 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.732488 B = 8243.803777 C = 8521.601864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.107 3.893 3 C 0.156 3.844 4 N -0.753 5.753 5 C 0.085 3.915 6 C -0.146 4.146 7 C -0.189 4.189 8 C 0.066 3.934 9 C -0.535 4.535 10 H 0.069 0.931 11 C 0.038 3.962 12 N -0.815 5.815 13 Si 1.064 2.936 14 H -0.280 1.280 15 H -0.278 1.278 16 H -0.276 1.276 17 C -0.180 4.180 18 C -0.148 4.148 19 C -0.142 4.142 20 C -0.121 4.121 21 C -0.156 4.156 22 C 0.056 3.944 23 O -0.364 6.364 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.387 0.613 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.296 0.704 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.396 -16.901 -4.530 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.067 3.933 3 C 0.030 3.970 4 N -0.390 5.390 5 C -0.012 4.012 6 C -0.169 4.169 7 C -0.209 4.209 8 C 0.062 3.938 9 C -0.565 4.565 10 H 0.087 0.913 11 C -0.181 4.181 12 N -0.440 5.440 13 Si 0.888 3.112 14 H -0.206 1.206 15 H -0.203 1.203 16 H -0.201 1.201 17 C -0.200 4.200 18 C -0.170 4.170 19 C -0.180 4.180 20 C -0.159 4.159 21 C -0.194 4.194 22 C -0.021 4.021 23 O -0.283 6.283 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.221 0.779 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.147 -15.675 -5.239 17.310 hybrid contribution -1.322 -1.658 0.722 2.240 sum -6.469 -17.333 -4.517 19.045 Atomic orbital electron populations 1.22405 0.95572 1.01991 1.03381 1.21723 0.93361 0.92457 0.85723 1.20974 0.98468 0.87784 0.89789 1.43705 1.60309 1.09675 1.25281 1.17279 1.02462 0.84262 0.97193 1.19870 1.04402 0.95632 0.96948 1.20520 1.07077 0.93721 0.99598 1.17551 0.92518 0.93170 0.90522 1.20293 1.09126 0.95922 1.31161 0.91324 1.26828 0.91756 1.07483 0.92023 1.70452 1.29495 1.09872 1.34140 0.83685 0.76716 0.73116 0.77640 1.20604 1.20314 1.20106 1.20750 1.06528 0.94330 0.98434 1.19991 1.02559 0.95622 0.98795 1.22117 1.02104 0.95787 0.98029 1.21598 1.00979 0.95604 0.97709 1.22186 1.02044 0.99409 0.95731 1.22566 0.98635 0.82788 0.98098 1.88077 1.73385 1.23950 1.42886 0.91371 0.92185 0.91475 0.92311 0.92929 0.77938 0.89470 0.88997 0.89051 0.87708 0.89312 0.90682 0.90781 0.91651 0.91577 0.91198 0.91079 0.93082 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 7.76 37.16 0.29 -1.63 16 2 C 0.11 1.31 0.76 -90.58 -0.07 1.24 16 3 C 0.16 2.41 4.03 -4.05 -0.02 2.39 16 4 N -0.75 -13.66 5.29 -58.50 -0.31 -13.97 16 5 C 0.09 1.90 6.67 -83.69 -0.56 1.34 16 6 C -0.15 -3.38 9.82 -39.77 -0.39 -3.77 16 7 C -0.19 -4.81 9.74 -39.26 -0.38 -5.20 16 8 C 0.07 1.81 5.30 -106.80 -0.57 1.25 16 9 C -0.54 -14.95 8.96 -37.87 -0.34 -15.29 16 10 H 0.07 1.88 7.96 -52.49 -0.42 1.46 16 11 C 0.04 1.03 4.92 -17.34 -0.09 0.94 16 12 N -0.81 -22.73 12.31 55.54 0.68 -22.05 16 13 Si 1.06 22.76 30.00 -169.99 -5.10 17.66 16 14 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 15 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 17 C -0.18 -4.78 7.90 -39.27 -0.31 -5.09 16 18 C -0.15 -3.51 9.23 -39.77 -0.37 -3.87 16 19 C -0.14 -1.45 4.92 -26.59 -0.13 -1.58 16 20 C -0.12 -1.02 5.72 -26.55 -0.15 -1.17 16 21 C -0.16 -1.31 6.14 -26.59 -0.16 -1.47 16 22 C 0.06 0.55 6.52 37.21 0.24 0.80 16 23 O -0.36 -4.89 9.98 -35.23 -0.35 -5.25 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.56 4.98 -51.93 -0.26 0.30 16 26 H 0.07 0.80 6.86 -51.93 -0.36 0.44 16 27 H 0.06 0.90 7.92 -51.93 -0.41 0.48 16 28 H 0.05 0.89 7.93 -51.93 -0.41 0.48 16 29 H 0.39 6.56 7.19 -40.82 -0.29 6.27 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 32 H 0.30 8.51 6.71 -40.82 -0.27 8.23 16 33 H 0.10 2.87 6.49 -52.48 -0.34 2.53 16 34 H 0.09 1.92 6.68 -52.49 -0.35 1.57 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.51 6.62 -51.93 -0.34 0.17 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.46 6.34 -51.93 -0.33 0.13 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 326.09 15.07 4.91 4.91 Total: -1.00 -29.45 326.09 -9.55 -39.00 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.39 Total: 10.80 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: -3.00 Total: -31.11 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.37 Total: -36.02 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.35 Total: -5.25 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.10 Total: 17.66 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.45 -9.55 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652146358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.549 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds