Wall clock time and date at job start Mon Mar 30 2020 01:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47998 * 2 1 4 4 N 1.46497 * 109.47772 * 59.97234 * 3 2 1 5 5 C 1.38851 * 120.00293 * 180.02562 * 4 3 2 6 6 C 1.39571 * 119.84367 * 180.02562 * 5 4 3 7 7 C 1.36339 * 120.16309 * 179.97438 * 6 5 4 8 8 C 1.40890 * 119.83378 * 0.02562 * 7 6 5 9 9 C 1.41132 * 120.15121 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00271 * 334.87777 * 9 8 7 11 11 C 1.39871 * 120.00163 * 154.87848 * 9 8 7 12 12 N 1.30906 * 119.99610 * 334.18898 * 11 9 8 13 13 Si 1.86797 * 120.00223 * 154.18539 * 11 9 8 14 14 H 1.48499 * 109.47139 * 90.00565 * 13 11 9 15 15 H 1.48499 * 109.47101 * 329.99981 * 13 11 9 16 16 H 1.48508 * 109.46973 * 210.00201 * 13 11 9 17 17 C 1.40878 * 119.68924 * 0.27061 * 8 7 6 18 18 C 1.36344 * 119.83925 * 359.42053 * 17 8 7 19 19 C 1.53094 * 109.48186 * 239.97121 * 2 1 3 20 20 C 1.53177 * 109.16221 * 297.61502 * 19 2 1 21 21 C 1.53171 * 109.03822 * 303.02002 * 20 19 2 22 22 C 1.53093 * 109.16633 * 56.97926 * 21 20 19 23 23 O 1.42899 * 109.41300 * 302.39753 * 22 21 20 24 24 H 1.09000 * 109.47124 * 60.00265 * 1 2 3 25 25 H 1.09001 * 109.47510 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47723 * 300.00307 * 1 2 3 27 27 H 1.09007 * 109.46785 * 299.97180 * 3 2 1 28 28 H 1.09007 * 109.47043 * 179.97438 * 3 2 1 29 29 H 0.96998 * 119.99524 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.91729 * 0.02562 * 6 5 4 31 31 H 1.07995 * 120.08266 * 179.97438 * 7 6 5 32 32 H 0.96999 * 120.00334 * 354.23128 * 12 11 9 33 33 H 1.08005 * 120.08232 * 179.72848 * 17 8 7 34 34 H 1.08000 * 119.92180 * 180.27104 * 18 17 8 35 35 H 1.08994 * 109.51719 * 57.52168 * 19 2 1 36 36 H 1.08997 * 109.52220 * 177.64790 * 19 2 1 37 37 H 1.09000 * 109.54465 * 62.88486 * 20 19 2 38 38 H 1.09004 * 109.54189 * 183.06303 * 20 19 2 39 39 H 1.09003 * 109.52492 * 176.88926 * 21 20 19 40 40 H 1.09006 * 109.52326 * 297.07465 * 21 20 19 41 41 H 1.09005 * 109.47618 * 62.37474 * 22 21 20 42 42 H 1.09001 * 109.48062 * 182.40824 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 1.5515 2.1334 1.1958 5 6 1.8866 3.4629 1.4151 6 6 1.4197 4.1178 2.5557 7 6 1.7452 5.4230 2.7778 8 6 2.5546 6.1108 1.8522 9 6 2.8962 7.4618 2.0757 10 1 2.2590 8.0863 2.6842 11 6 4.0599 7.9920 1.5091 12 7 5.0648 7.2042 1.2204 13 14 4.1801 9.8239 1.1644 14 1 4.7413 10.5154 2.3527 15 1 2.8276 10.3622 0.8711 16 1 5.0673 10.0504 -0.0048 17 6 3.0172 5.4451 0.7000 18 6 2.6889 4.1379 0.4939 19 6 2.0405 -0.7223 -1.2496 20 6 1.5760 -2.1814 -1.2120 21 6 2.0768 -2.8321 0.0810 22 6 1.5649 -2.0284 1.2792 23 8 2.0067 -0.6741 1.1664 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6773 1.9561 -0.8903 28 1 3.1302 1.4422 0.0005 29 1 0.9938 1.6621 1.8343 30 1 0.7996 3.5891 3.2645 31 1 1.3828 5.9286 3.6606 32 1 5.0365 6.2687 1.4750 33 1 3.6344 5.9675 -0.0160 34 1 3.0464 3.6250 -0.3867 35 1 1.6419 -0.2358 -2.1398 36 1 3.1297 -0.6863 -1.2716 37 1 0.4870 -2.2182 -1.2405 38 1 1.9815 -2.7154 -2.0714 39 1 1.7043 -3.8547 0.1423 40 1 3.1668 -2.8397 0.0864 41 1 0.4753 -2.0551 1.2960 42 1 1.9536 -2.4621 2.2006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652146358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:34 Heat of formation + Delta-G solvation = -57.931939 kcal Electronic energy + Delta-G solvation = -21196.553930 eV Core-core repulsion = 18139.568045 eV Total energy + Delta-G solvation = -3056.985886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.10389 -39.81429 -37.00755 -35.15722 -34.64559 -33.11740 -31.51151 -30.18574 -29.06898 -27.48027 -25.86368 -24.83604 -23.41910 -22.57514 -21.71109 -20.12370 -19.74395 -18.12638 -17.28186 -16.92664 -16.47269 -16.19075 -15.77169 -15.61289 -15.41053 -15.06832 -14.75141 -14.44338 -14.19646 -13.91672 -13.78700 -13.59841 -13.45647 -13.14324 -13.03973 -12.73585 -12.60971 -12.54050 -12.16558 -11.94743 -11.93048 -11.60631 -11.47717 -11.33026 -11.01021 -10.89592 -10.40432 -10.32141 -9.63179 -9.06226 -8.30014 -6.09485 0.96730 1.08823 1.52278 1.68902 1.82355 2.40572 2.69866 2.79458 2.87810 3.65778 3.67479 3.84583 3.88071 3.94539 4.08933 4.24619 4.30136 4.35956 4.47078 4.52248 4.60812 4.64382 4.74019 4.81144 4.84598 4.90882 4.96728 5.00864 5.03921 5.09747 5.16826 5.20030 5.24049 5.45105 5.49596 5.56248 5.73698 5.90264 5.93377 6.29631 6.35142 6.40189 6.70606 6.96678 7.09826 7.23396 8.19615 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040822 B = 0.003396 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.732488 B = 8243.803777 C = 8521.601864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.112 3.888 3 C 0.149 3.851 4 N -0.742 5.742 5 C 0.108 3.892 6 C -0.154 4.154 7 C -0.196 4.196 8 C 0.029 3.971 9 C -0.572 4.572 10 H 0.062 0.938 11 C 0.000 4.000 12 N -0.837 5.837 13 Si 1.117 2.883 14 H -0.262 1.262 15 H -0.267 1.267 16 H -0.271 1.271 17 C -0.191 4.191 18 C -0.160 4.160 19 C -0.142 4.142 20 C -0.118 4.118 21 C -0.153 4.153 22 C 0.049 3.951 23 O -0.394 6.394 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.397 0.603 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.278 0.722 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 -18.810 -5.110 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.072 3.928 3 C 0.024 3.976 4 N -0.377 5.377 5 C 0.009 3.991 6 C -0.176 4.176 7 C -0.216 4.216 8 C 0.025 3.975 9 C -0.603 4.603 10 H 0.081 0.919 11 C -0.213 4.213 12 N -0.462 5.462 13 Si 0.935 3.065 14 H -0.187 1.187 15 H -0.192 1.192 16 H -0.196 1.196 17 C -0.211 4.211 18 C -0.182 4.182 19 C -0.180 4.180 20 C -0.156 4.156 21 C -0.191 4.191 22 C -0.027 4.027 23 O -0.314 6.314 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.232 0.768 30 H 0.137 0.863 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.542 -17.648 -5.811 19.698 hybrid contribution -0.987 -1.331 0.933 1.902 sum -7.530 -18.979 -4.878 20.992 Atomic orbital electron populations 1.22376 0.94249 1.03291 1.03063 1.21629 0.94183 0.90402 0.86555 1.21163 0.97637 0.90144 0.88656 1.43774 1.59531 1.08090 1.26281 1.17428 1.00035 0.85782 0.95903 1.20163 1.04619 0.94995 0.97798 1.20727 1.06627 0.94822 0.99431 1.17857 0.94136 0.93829 0.91632 1.20486 1.10052 0.96652 1.33074 0.91936 1.28287 0.90840 1.11353 0.90858 1.70579 1.30294 1.09109 1.36231 0.83021 0.77353 0.67899 0.78225 1.18720 1.19154 1.19565 1.20683 1.06841 0.95469 0.98122 1.20158 1.03076 0.94915 1.00046 1.22118 1.01472 0.97165 0.97250 1.21611 1.01681 0.94109 0.98172 1.22172 1.01461 1.00362 0.95091 1.22786 0.99447 0.81312 0.99161 1.88021 1.74114 1.25862 1.43380 0.90832 0.90131 0.92600 0.91713 0.94501 0.76836 0.86348 0.88496 0.91009 0.89621 0.87462 0.89687 0.91899 0.90522 0.90248 0.88994 0.92103 0.91882 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 7.76 71.98 0.56 -2.69 16 2 C 0.11 2.50 0.76 -10.76 -0.01 2.49 16 3 C 0.15 4.40 4.03 86.38 0.35 4.75 16 4 N -0.74 -25.59 5.29 -338.99 -1.79 -27.38 16 5 C 0.11 4.72 6.67 38.67 0.26 4.98 16 6 C -0.15 -6.92 9.82 22.15 0.22 -6.70 16 7 C -0.20 -10.09 9.74 22.48 0.22 -9.87 16 8 C 0.03 1.63 5.30 -21.27 -0.11 1.52 16 9 C -0.57 -33.18 8.96 23.38 0.21 -32.97 16 10 H 0.06 3.55 7.96 -2.91 -0.02 3.53 16 11 C 0.00 -0.02 4.92 85.23 0.42 0.40 16 12 N -0.84 -48.48 12.31 21.82 0.27 -48.21 16 13 Si 1.12 46.48 30.00 68.60 2.06 48.54 16 14 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 15 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 17 C -0.19 -10.47 7.90 22.47 0.18 -10.29 16 18 C -0.16 -7.62 9.23 22.15 0.20 -7.41 16 19 C -0.14 -2.56 4.92 30.68 0.15 -2.41 16 20 C -0.12 -1.59 5.72 30.71 0.18 -1.41 16 21 C -0.15 -2.13 6.14 30.68 0.19 -1.94 16 22 C 0.05 0.84 6.52 72.01 0.47 1.31 16 23 O -0.39 -9.84 9.98 -148.98 -1.49 -11.32 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.19 4.98 -2.39 -0.01 1.18 16 26 H 0.05 1.18 6.86 -2.39 -0.02 1.16 16 27 H 0.06 1.86 7.92 -2.38 -0.02 1.84 16 28 H 0.04 1.22 7.93 -2.38 -0.02 1.20 16 29 H 0.40 12.51 7.19 -92.71 -0.67 11.84 16 30 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 32 H 0.28 16.83 6.71 -92.71 -0.62 16.20 16 33 H 0.09 4.94 6.49 -2.91 -0.02 4.92 16 34 H 0.11 4.62 6.68 -2.91 -0.02 4.60 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 0.88 6.62 -2.39 -0.02 0.86 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.06 0.92 6.34 -2.38 -0.02 0.91 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -65.49 326.09 3.01 -62.47 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.49 Total: 36.16 kcal Atomic # 6 Polarization: -63.72 SS G_CDS: 3.48 Total: -60.25 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.53 Total: -75.60 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.49 Total: -11.32 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.06 Total: 48.54 kcal Total: -65.49 3.01 -62.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652146358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.543 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds