Wall clock time and date at job start Mon Mar 30 2020 01:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46839 * 2 1 4 4 C 1.38262 * 120.06618 * 90.00572 * 3 2 1 5 5 C 1.38032 * 119.83074 * 180.02562 * 4 3 2 6 6 C 1.38675 * 120.34719 * 359.97061 * 5 4 3 7 7 C 1.37840 * 119.85169 * 359.88531 * 6 5 4 8 8 C 1.38018 * 120.06638 * 269.98033 * 3 2 1 9 9 C 1.50621 * 121.84759 * 180.45024 * 7 6 5 10 10 N 1.46627 * 110.49224 * 342.40727 * 9 7 6 11 11 C 1.46891 * 111.00447 * 289.13521 * 10 9 7 12 12 C 1.52995 * 109.47392 * 293.95377 * 11 10 9 13 13 H 1.09002 * 109.47282 * 59.99593 * 12 11 10 14 14 O 1.42904 * 109.47169 * 300.00212 * 12 11 10 15 15 C 1.50701 * 109.47524 * 179.97438 * 12 11 10 16 16 H 1.07996 * 119.99934 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00016 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00024 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99925 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47267 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47568 * 120.00015 * 19 17 15 22 22 H 1.48507 * 109.46890 * 239.99991 * 19 17 15 23 23 C 1.46943 * 110.20078 * 52.53908 * 10 9 7 24 24 C 1.50718 * 118.49040 * 179.84194 * 6 5 4 25 25 H 1.08995 * 109.46993 * 299.99460 * 1 2 3 26 26 H 1.09000 * 109.47440 * 60.00108 * 1 2 3 27 27 H 1.09001 * 109.46665 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46603 * 240.00614 * 2 1 3 29 29 H 1.08993 * 109.47299 * 120.00273 * 2 1 3 30 30 H 1.07997 * 120.08224 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.82632 * 179.97438 * 5 4 3 32 32 H 1.07992 * 119.81249 * 0.02562 * 8 3 2 33 33 H 1.08994 * 109.30158 * 102.72632 * 9 7 6 34 34 H 1.09002 * 109.29554 * 222.30460 * 9 7 6 35 35 H 1.09007 * 109.47387 * 53.95612 * 11 10 9 36 36 H 1.09002 * 109.47239 * 173.94944 * 11 10 9 37 37 H 0.96705 * 113.99621 * 299.99504 * 14 12 11 38 38 H 0.97005 * 119.99978 * 180.02562 * 18 17 15 39 39 H 1.09008 * 109.50233 * 168.99890 * 23 10 9 40 40 H 1.08993 * 109.64753 * 48.48520 * 23 10 9 41 41 H 1.09002 * 109.38890 * 283.28503 * 24 6 5 42 42 H 1.08996 * 109.39152 * 43.08430 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2633 2.0739 1.1966 5 6 2.7228 3.3755 1.1909 6 6 2.9547 4.0314 -0.0087 7 6 2.7274 3.3800 -1.2020 8 6 2.2632 2.0727 -1.1945 9 6 2.9736 4.0458 -2.5304 10 7 3.0537 5.5009 -2.3683 11 6 1.7351 6.0696 -2.0591 12 6 0.8066 5.8880 -3.2615 13 1 0.7015 4.8258 -3.4823 14 8 1.3601 6.5577 -4.3961 15 6 -0.5464 6.4709 -2.9441 16 1 -0.7259 6.9258 -1.9812 17 6 -1.5549 6.4234 -3.8830 18 7 -1.3360 5.8699 -5.0557 19 14 -3.2317 7.1466 -3.4898 20 1 -3.2193 7.7062 -2.1144 21 1 -3.5457 8.2254 -4.4608 22 1 -4.2635 6.0824 -3.5814 23 6 4.0321 5.8422 -1.3265 24 6 3.4528 5.4533 0.0339 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0846 1.5669 2.1333 31 1 2.9028 3.8857 2.1256 32 1 2.0825 1.5617 -2.1286 33 1 3.9099 3.6779 -2.9498 34 1 2.1558 3.8066 -3.2102 35 1 1.3129 5.5588 -1.1936 36 1 1.8402 7.1318 -1.8383 37 1 1.4818 7.5088 -4.2707 38 1 -2.0455 5.8369 -5.7164 39 1 4.2277 6.9144 -1.3482 40 1 4.9584 5.2947 -1.5001 41 1 2.6254 6.1194 0.2788 42 1 4.2270 5.5428 0.7959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655153507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:24 Heat of formation + Delta-G solvation = -35.393434 kcal Electronic energy + Delta-G solvation = -21801.872487 eV Core-core repulsion = 18745.863944 eV Total energy + Delta-G solvation = -3056.008543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.26547 -37.61376 -35.30561 -33.70260 -32.09129 -32.03838 -30.44333 -28.59574 -28.09058 -25.37035 -24.28135 -23.22926 -22.09789 -21.54216 -20.62171 -18.40322 -16.93839 -16.01779 -15.70708 -15.28760 -14.81834 -14.56131 -14.42345 -14.23644 -13.92714 -13.57301 -13.38467 -13.18919 -12.95893 -12.67411 -12.42981 -12.20299 -11.91618 -11.40616 -11.35225 -11.14626 -11.05671 -11.01639 -10.92669 -10.81610 -10.70268 -10.46125 -10.30685 -9.99968 -8.93263 -8.54890 -8.48822 -8.19840 -8.05766 -7.63361 -5.97446 -4.15010 1.52717 1.58690 3.27987 3.36183 3.39565 3.88448 4.36563 4.57259 4.78092 4.88262 4.99547 5.13568 5.17761 5.30148 5.31470 5.38160 5.40565 5.51486 5.60635 5.68576 5.76680 5.86044 5.89516 5.93768 6.02120 6.08850 6.15788 6.22494 6.26218 6.29742 6.33981 6.44423 6.60235 6.60798 6.77461 6.84295 6.92182 7.22453 7.55257 7.64516 7.81829 7.92022 8.24637 8.88943 9.50134 9.66647 11.06809 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.005913 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.653808 B = 4734.339404 C = 5748.432031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.087 4.087 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.080 4.080 7 C -0.095 4.095 8 C -0.110 4.110 9 C 0.087 3.913 10 N -0.514 5.514 11 C 0.026 3.974 12 C 0.237 3.763 13 H 0.053 0.947 14 O -0.555 6.555 15 C -0.571 4.571 16 H 0.054 0.946 17 C 0.080 3.920 18 N -0.859 5.859 19 Si 0.886 3.114 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.051 3.949 24 C -0.118 4.118 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.034 0.966 36 H 0.061 0.939 37 H 0.342 0.658 38 H 0.259 0.741 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.883 -7.511 11.116 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.088 4.088 4 C -0.143 4.143 5 C -0.137 4.137 6 C -0.080 4.080 7 C -0.097 4.097 8 C -0.128 4.128 9 C -0.042 4.042 10 N -0.234 5.234 11 C -0.101 4.101 12 C 0.179 3.821 13 H 0.071 0.929 14 O -0.357 6.357 15 C -0.609 4.609 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.495 5.495 19 Si 0.714 3.286 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.078 4.078 24 C -0.156 4.156 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.185 0.815 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.959 -7.949 10.212 15.739 hybrid contribution -1.407 0.554 1.461 2.102 sum 7.552 -7.395 11.672 15.747 Atomic orbital electron populations 1.21759 0.94718 1.01416 1.02645 1.20501 0.96244 0.92768 1.02346 1.19779 0.99560 0.96193 0.93222 1.20839 1.01208 0.95011 0.97228 1.20994 1.00585 0.94884 0.97196 1.19521 1.00071 0.95871 0.92543 1.20534 0.98062 0.94551 0.96520 1.20966 0.99837 0.94433 0.97600 1.21225 1.02845 0.87507 0.92585 1.62630 1.09207 1.09016 1.42595 1.23122 0.88184 0.98267 1.00549 1.19319 0.87939 0.94000 0.80820 0.92896 1.86556 1.85592 1.22120 1.41395 1.21679 0.97085 1.41253 1.00923 0.92820 1.25006 0.98345 0.94396 0.94838 1.70093 1.32363 1.42032 1.04984 0.86661 0.84465 0.79045 0.78475 1.19778 1.20827 1.20935 1.22196 0.95914 1.01163 0.88495 1.21132 1.01094 0.93228 1.00166 0.92669 0.92108 0.92645 0.91204 0.91485 0.86664 0.86642 0.86145 0.90155 0.88458 0.94762 0.92019 0.81470 0.93104 0.90555 0.91223 0.90324 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.90 37.16 0.37 -1.27 16 2 C -0.08 -0.89 6.07 -27.88 -0.17 -1.06 16 3 C -0.09 -1.20 5.13 -104.69 -0.54 -1.73 16 4 C -0.12 -1.66 9.71 -39.65 -0.38 -2.04 16 5 C -0.12 -1.65 9.66 -39.50 -0.38 -2.03 16 6 C -0.08 -1.23 5.05 -104.60 -0.53 -1.76 16 7 C -0.09 -1.56 5.20 -104.62 -0.54 -2.11 16 8 C -0.11 -1.68 9.31 -39.48 -0.37 -2.05 16 9 C 0.09 1.52 5.43 -5.16 -0.03 1.49 16 10 N -0.51 -9.41 4.89 -236.39 -1.16 -10.56 16 11 C 0.03 0.55 3.56 -3.83 -0.01 0.53 16 12 C 0.24 6.05 2.71 -27.89 -0.08 5.98 16 13 H 0.05 1.49 6.35 -51.93 -0.33 1.16 16 14 O -0.55 -14.57 12.60 -35.23 -0.44 -15.01 16 15 C -0.57 -15.85 8.76 -34.44 -0.30 -16.15 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 18 N -0.86 -25.60 12.84 55.43 0.71 -24.89 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.05 0.75 6.01 -3.85 -0.02 0.73 16 24 C -0.12 -1.65 5.17 -27.93 -0.14 -1.80 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.10 1.94 6.02 -51.93 -0.31 1.63 16 35 H 0.03 0.74 5.87 -51.93 -0.30 0.43 16 36 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 37 H 0.34 8.09 9.04 45.56 0.41 8.51 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 40 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 41 H 0.08 1.18 7.04 -51.93 -0.37 0.81 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -30.93 333.95 -10.03 -40.96 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.93 Total: 9.20 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -3.23 Total: -21.11 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.44 Total: -35.45 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.44 Total: -15.01 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.93 -10.03 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655153507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.569 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds