Wall clock time and date at job start Mon Mar 30 2020 01:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46839 * 2 1 4 4 C 1.38262 * 120.06618 * 90.00572 * 3 2 1 5 5 C 1.38032 * 119.83074 * 180.02562 * 4 3 2 6 6 C 1.38675 * 120.34719 * 359.97061 * 5 4 3 7 7 C 1.37840 * 119.85169 * 359.88531 * 6 5 4 8 8 C 1.38018 * 120.06638 * 269.98033 * 3 2 1 9 9 C 1.50621 * 121.84759 * 180.45024 * 7 6 5 10 10 N 1.46627 * 110.49224 * 342.40727 * 9 7 6 11 11 C 1.46891 * 111.00447 * 289.13521 * 10 9 7 12 12 C 1.52995 * 109.47392 * 293.95377 * 11 10 9 13 13 H 1.09002 * 109.47282 * 59.99593 * 12 11 10 14 14 O 1.42904 * 109.47169 * 300.00212 * 12 11 10 15 15 C 1.50701 * 109.47524 * 179.97438 * 12 11 10 16 16 H 1.07996 * 119.99934 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00016 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00024 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99925 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47267 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47568 * 120.00015 * 19 17 15 22 22 H 1.48507 * 109.46890 * 239.99991 * 19 17 15 23 23 C 1.46943 * 110.20078 * 52.53908 * 10 9 7 24 24 C 1.50718 * 118.49040 * 179.84194 * 6 5 4 25 25 H 1.08995 * 109.46993 * 299.99460 * 1 2 3 26 26 H 1.09000 * 109.47440 * 60.00108 * 1 2 3 27 27 H 1.09001 * 109.46665 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46603 * 240.00614 * 2 1 3 29 29 H 1.08993 * 109.47299 * 120.00273 * 2 1 3 30 30 H 1.07997 * 120.08224 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.82632 * 179.97438 * 5 4 3 32 32 H 1.07992 * 119.81249 * 0.02562 * 8 3 2 33 33 H 1.08994 * 109.30158 * 102.72632 * 9 7 6 34 34 H 1.09002 * 109.29554 * 222.30460 * 9 7 6 35 35 H 1.09007 * 109.47387 * 53.95612 * 11 10 9 36 36 H 1.09002 * 109.47239 * 173.94944 * 11 10 9 37 37 H 0.96705 * 113.99621 * 299.99504 * 14 12 11 38 38 H 0.97005 * 119.99978 * 180.02562 * 18 17 15 39 39 H 1.09008 * 109.50233 * 168.99890 * 23 10 9 40 40 H 1.08993 * 109.64753 * 48.48520 * 23 10 9 41 41 H 1.09002 * 109.38890 * 283.28503 * 24 6 5 42 42 H 1.08996 * 109.39152 * 43.08430 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2633 2.0739 1.1966 5 6 2.7228 3.3755 1.1909 6 6 2.9547 4.0314 -0.0087 7 6 2.7274 3.3800 -1.2020 8 6 2.2632 2.0727 -1.1945 9 6 2.9736 4.0458 -2.5304 10 7 3.0537 5.5009 -2.3683 11 6 1.7351 6.0696 -2.0591 12 6 0.8066 5.8880 -3.2615 13 1 0.7015 4.8258 -3.4823 14 8 1.3601 6.5577 -4.3961 15 6 -0.5464 6.4709 -2.9441 16 1 -0.7259 6.9258 -1.9812 17 6 -1.5549 6.4234 -3.8830 18 7 -1.3360 5.8699 -5.0557 19 14 -3.2317 7.1466 -3.4898 20 1 -3.2193 7.7062 -2.1144 21 1 -3.5457 8.2254 -4.4608 22 1 -4.2635 6.0824 -3.5814 23 6 4.0321 5.8422 -1.3265 24 6 3.4528 5.4533 0.0339 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0846 1.5669 2.1333 31 1 2.9028 3.8857 2.1256 32 1 2.0825 1.5617 -2.1286 33 1 3.9099 3.6779 -2.9498 34 1 2.1558 3.8066 -3.2102 35 1 1.3129 5.5588 -1.1936 36 1 1.8402 7.1318 -1.8383 37 1 1.4818 7.5088 -4.2707 38 1 -2.0455 5.8369 -5.7164 39 1 4.2277 6.9144 -1.3482 40 1 4.9584 5.2947 -1.5001 41 1 2.6254 6.1194 0.2788 42 1 4.2270 5.5428 0.7959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655153507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:23 Heat of formation + Delta-G solvation = -55.696956 kcal Electronic energy + Delta-G solvation = -21802.752914 eV Core-core repulsion = 18745.863944 eV Total energy + Delta-G solvation = -3056.888970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48117 -38.94682 -37.14508 -34.84504 -34.21396 -33.24253 -31.75946 -30.12266 -29.42657 -27.19383 -25.49647 -24.54962 -23.25689 -22.94381 -22.06800 -19.79607 -18.94457 -17.21577 -16.93816 -16.72566 -16.59498 -16.25444 -15.76522 -15.73212 -15.38146 -14.79510 -14.58384 -14.39396 -14.33458 -14.14055 -13.87737 -13.39373 -13.13799 -13.00745 -12.91536 -12.86384 -12.53768 -12.43371 -12.27329 -12.09374 -12.05684 -11.89719 -11.72336 -11.51160 -10.95485 -10.69519 -10.08741 -9.64115 -9.31393 -9.10541 -8.13857 -6.39420 0.41678 0.45849 1.37431 1.38451 1.50644 2.37173 2.77106 3.10573 3.14928 3.72876 3.81622 3.93172 4.03557 4.12425 4.20326 4.26003 4.34315 4.37273 4.48343 4.50983 4.58926 4.60435 4.64660 4.75866 4.77515 4.88804 4.93474 4.99635 5.01393 5.06233 5.10491 5.18819 5.26472 5.36340 5.48698 5.60619 5.69663 5.71296 5.76610 6.03217 6.13669 6.21988 6.28213 6.74057 7.34605 7.63566 8.90951 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.005913 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.653808 B = 4734.339404 C = 5748.432031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.091 4.091 4 C -0.125 4.125 5 C -0.122 4.122 6 C -0.096 4.096 7 C -0.117 4.117 8 C -0.130 4.130 9 C 0.092 3.908 10 N -0.527 5.527 11 C 0.052 3.948 12 C 0.239 3.761 13 H 0.017 0.983 14 O -0.570 6.570 15 C -0.586 4.586 16 H 0.055 0.945 17 C 0.027 3.973 18 N -0.899 5.899 19 Si 0.957 3.043 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.280 1.280 23 C 0.051 3.949 24 C -0.112 4.112 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.353 0.647 38 H 0.261 0.739 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -7.498 13.631 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.091 4.091 4 C -0.143 4.143 5 C -0.139 4.139 6 C -0.097 4.097 7 C -0.119 4.119 8 C -0.149 4.149 9 C -0.036 4.036 10 N -0.247 5.247 11 C -0.076 4.076 12 C 0.181 3.819 13 H 0.034 0.966 14 O -0.373 6.373 15 C -0.624 4.624 16 H 0.074 0.926 17 C -0.176 4.176 18 N -0.536 5.536 19 Si 0.782 3.218 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.206 1.206 23 C -0.077 4.077 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.197 0.803 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.260 -7.931 12.742 17.635 hybrid contribution -1.446 0.490 0.674 1.669 sum 7.814 -7.441 13.416 17.216 Atomic orbital electron populations 1.21747 0.94853 1.02410 1.01388 1.20555 0.95977 0.91339 1.03747 1.20111 0.98758 0.97462 0.92780 1.21236 0.99960 0.94963 0.98123 1.21331 0.99807 0.95247 0.97563 1.19767 1.00552 0.96665 0.92672 1.20489 0.99904 0.95248 0.96277 1.21110 1.00727 0.94556 0.98494 1.21047 1.01963 0.87516 0.93067 1.62544 1.08315 1.09349 1.44537 1.22623 0.88809 0.98590 0.97610 1.19152 0.88735 0.91787 0.82241 0.96573 1.86500 1.85625 1.23015 1.42205 1.22051 0.98356 1.41039 1.00956 0.92644 1.25873 1.02401 0.94704 0.94583 1.70231 1.33775 1.43487 1.06138 0.85551 0.79372 0.78280 0.78635 1.18808 1.20141 1.20554 1.22308 0.95267 1.02166 0.87974 1.21101 1.01481 0.92112 1.00308 0.92742 0.94504 0.90561 0.90771 0.89118 0.83772 0.84085 0.86598 0.88983 0.92197 0.95685 0.91368 0.80326 0.93004 0.89284 0.89801 0.91314 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.90 71.98 0.71 -2.37 16 2 C -0.08 -1.60 6.07 29.85 0.18 -1.42 16 3 C -0.09 -2.39 5.13 -19.91 -0.10 -2.50 16 4 C -0.13 -3.01 9.71 22.23 0.22 -2.79 16 5 C -0.12 -3.09 9.66 22.33 0.22 -2.88 16 6 C -0.10 -2.86 5.05 -19.85 -0.10 -2.96 16 7 C -0.12 -3.93 5.20 -19.87 -0.10 -4.03 16 8 C -0.13 -4.08 9.31 22.34 0.21 -3.88 16 9 C 0.09 3.39 5.43 85.58 0.46 3.85 16 10 N -0.53 -19.45 4.89 -901.81 -4.41 -23.86 16 11 C 0.05 2.20 3.56 86.30 0.31 2.50 16 12 C 0.24 12.65 2.71 29.85 0.08 12.73 16 13 H 0.02 0.99 6.35 -2.39 -0.02 0.97 16 14 O -0.57 -30.91 12.60 -148.98 -1.88 -32.78 16 15 C -0.59 -33.12 8.76 25.60 0.22 -32.89 16 16 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 17 C 0.03 1.53 5.40 84.65 0.46 1.99 16 18 N -0.90 -54.99 12.84 21.45 0.28 -54.72 16 19 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 20 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 C 0.05 1.42 6.01 86.26 0.52 1.94 16 24 C -0.11 -2.91 5.17 29.82 0.15 -2.76 16 25 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 29 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 30 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 33 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.06 2.61 6.02 -2.39 -0.01 2.59 16 35 H 0.02 1.10 5.87 -2.38 -0.01 1.09 16 36 H 0.07 2.77 8.09 -2.39 -0.02 2.75 16 37 H 0.35 17.02 9.04 -74.05 -0.67 16.35 16 38 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 39 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.08 2.13 8.04 -2.39 -0.02 2.11 16 41 H 0.07 1.94 7.04 -2.39 -0.02 1.92 16 42 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -67.71 333.95 -0.22 -67.92 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.33 Total: 32.65 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 3.43 Total: -35.47 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -4.13 Total: -78.57 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.88 Total: -32.78 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.71 -0.22 -67.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655153507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.225 kcal (2) G-P(sol) polarization free energy of solvation -67.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds