Wall clock time and date at job start Mon Mar 30 2020 01:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47412 * 2 1 4 4 C 1.38257 * 120.08438 * 270.02418 * 3 2 1 5 5 C 1.38012 * 119.86384 * 180.02562 * 4 3 2 6 6 C 1.38735 * 120.37877 * 0.03589 * 5 4 3 7 7 C 1.37829 * 119.72986 * 359.79641 * 6 5 4 8 8 C 1.38032 * 120.08485 * 89.99787 * 3 2 1 9 9 C 1.50710 * 121.66171 * 180.27332 * 7 6 5 10 10 C 1.52896 * 109.96551 * 343.10676 * 9 7 6 11 11 N 1.47170 * 108.50628 * 50.38139 * 10 9 7 12 12 C 1.46898 * 110.99674 * 52.15141 * 11 10 9 13 13 C 1.53001 * 109.46893 * 170.00265 * 12 11 10 14 14 H 1.08999 * 109.47164 * 60.00204 * 13 12 11 15 15 O 1.42903 * 109.47171 * 299.99938 * 13 12 11 16 16 C 1.50707 * 109.47316 * 180.02562 * 13 12 11 17 17 H 1.07995 * 119.99310 * 359.97438 * 16 13 12 18 18 C 1.37872 * 119.99931 * 179.97438 * 16 13 12 19 19 N 1.31517 * 119.99867 * 179.97438 * 18 16 13 20 20 Si 1.86795 * 120.00226 * 359.97438 * 18 16 13 21 21 H 1.48500 * 109.47385 * 90.00022 * 20 18 16 22 22 H 1.48504 * 109.47165 * 209.99884 * 20 18 16 23 23 H 1.48500 * 109.47346 * 330.00169 * 20 18 16 24 24 C 1.46637 * 110.24449 * 288.74258 * 11 10 9 25 25 H 1.09003 * 109.47078 * 299.99786 * 1 2 3 26 26 H 1.09002 * 109.47170 * 59.99520 * 1 2 3 27 27 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47078 * 240.00213 * 2 1 3 29 29 H 1.09007 * 109.47037 * 120.00028 * 2 1 3 30 30 H 1.07991 * 120.06975 * 0.06842 * 4 3 2 31 31 H 1.08010 * 119.81025 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.82647 * 359.97438 * 8 3 2 33 33 H 1.08999 * 109.39269 * 222.95585 * 9 7 6 34 34 H 1.08997 * 109.38810 * 103.25743 * 9 7 6 35 35 H 1.08999 * 109.63347 * 290.68017 * 10 9 7 36 36 H 1.08994 * 109.63642 * 170.08607 * 10 9 7 37 37 H 1.08999 * 109.47049 * 50.00399 * 12 11 10 38 38 H 1.08997 * 109.47646 * 290.00448 * 12 11 10 39 39 H 0.96700 * 114.00311 * 300.00378 * 15 13 12 40 40 H 0.97000 * 120.00088 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.30013 * 172.87190 * 24 11 10 42 42 H 1.09001 * 109.29689 * 292.24083 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2630 2.0744 -1.1963 5 6 2.7236 3.3754 -1.1910 6 6 2.9576 4.0319 0.0085 7 6 2.7243 3.3810 1.2008 8 6 2.2630 2.0732 1.1944 9 6 2.9578 4.0544 2.5287 10 6 3.8374 5.2906 2.3396 11 7 3.2674 6.1083 1.2568 12 6 1.8431 6.3779 1.4947 13 6 1.3483 7.4250 0.4949 14 1 1.4826 7.0504 -0.5198 15 8 2.0956 8.6318 0.6601 16 6 -0.1128 7.7021 0.7394 17 1 -0.6360 7.1829 1.5286 18 6 -0.7812 8.6183 -0.0445 19 7 -2.0563 8.8598 0.1685 20 14 0.1242 9.5169 -1.4091 21 1 0.0215 8.7368 -2.6686 22 1 -0.4826 10.8578 -1.6065 23 1 1.5537 9.6703 -1.0373 24 6 3.4682 5.4482 -0.0371 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0824 1.5682 -2.1330 31 1 2.9030 3.8853 -2.1261 32 1 2.0821 1.5628 2.1289 33 1 3.4530 3.3582 3.2055 34 1 2.0007 4.3533 2.9561 35 1 4.8486 4.9833 2.0728 36 1 3.8592 5.8695 3.2629 37 1 1.7088 6.7524 2.5095 38 1 1.2731 5.4574 1.3688 39 1 2.0225 9.0222 1.5418 40 1 -2.5266 9.5047 -0.3828 41 1 2.9328 5.9997 -0.8099 42 1 4.5317 5.4399 -0.2761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656568696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:20 Heat of formation + Delta-G solvation = -30.276811 kcal Electronic energy + Delta-G solvation = -21791.759856 eV Core-core repulsion = 18735.973187 eV Total energy + Delta-G solvation = -3055.786670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34801 -37.74814 -35.63955 -33.73061 -32.50106 -32.18319 -29.93742 -29.30932 -28.20240 -25.65377 -24.18030 -23.26312 -22.35657 -21.51615 -20.47014 -18.63949 -17.15246 -16.19171 -15.83962 -15.23309 -14.95207 -14.80852 -14.61670 -14.23742 -13.85840 -13.71532 -13.67430 -13.16726 -13.00145 -12.71614 -12.64961 -12.35532 -12.03250 -11.82394 -11.58891 -11.27365 -11.16285 -11.02480 -10.97410 -10.90574 -10.66216 -10.51554 -10.25582 -9.82798 -8.97035 -8.59445 -8.57853 -8.26713 -8.19040 -7.78158 -6.09389 -4.20020 1.46780 1.51775 3.41609 3.51169 3.79250 3.82039 4.37955 4.57518 4.70185 4.77752 4.96311 5.06731 5.09576 5.23113 5.26047 5.28700 5.31823 5.43373 5.53300 5.59645 5.66268 5.74654 5.79109 5.86749 5.90289 5.96810 6.01945 6.08958 6.11481 6.18987 6.21339 6.30484 6.38162 6.55852 6.67607 6.70219 6.79710 7.15800 7.29728 7.42440 7.57479 7.72827 8.33627 8.87666 9.15958 9.56061 11.01447 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.005488 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.733275 B = 5101.145951 C = 5732.583634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.089 4.089 4 C -0.121 4.121 5 C -0.110 4.110 6 C -0.106 4.106 7 C -0.071 4.071 8 C -0.118 4.118 9 C -0.119 4.119 10 C 0.052 3.948 11 N -0.517 5.517 12 C 0.036 3.964 13 C 0.202 3.798 14 H 0.051 0.949 15 O -0.571 6.571 16 C -0.563 4.563 17 H 0.070 0.930 18 C 0.084 3.916 19 N -0.895 5.895 20 Si 0.869 3.131 21 H -0.289 1.289 22 H -0.296 1.296 23 H -0.214 1.214 24 C 0.088 3.912 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.354 0.646 40 H 0.264 0.736 41 H 0.092 0.908 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.888 -15.030 1.242 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.139 4.139 5 C -0.129 4.129 6 C -0.108 4.108 7 C -0.071 4.071 8 C -0.136 4.136 9 C -0.158 4.158 10 C -0.076 4.076 11 N -0.238 5.238 12 C -0.092 4.092 13 C 0.144 3.856 14 H 0.068 0.932 15 O -0.376 6.376 16 C -0.601 4.601 17 H 0.088 0.912 18 C -0.120 4.120 19 N -0.532 5.532 20 Si 0.696 3.304 21 H -0.216 1.216 22 H -0.223 1.223 23 H -0.136 1.136 24 C -0.041 4.041 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.200 0.800 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.160 -14.567 0.578 18.359 hybrid contribution -0.645 -0.408 -0.154 0.779 sum 10.515 -14.975 0.424 18.303 Atomic orbital electron populations 1.21755 0.94737 1.01407 1.02590 1.20495 0.96203 0.92782 1.02343 1.19754 0.99750 0.96162 0.93230 1.20892 1.00726 0.95031 0.97300 1.21073 0.99490 0.94729 0.97585 1.20493 0.99670 0.97892 0.92740 1.19507 0.99139 0.93896 0.94551 1.20885 1.00881 0.94435 0.97366 1.21143 1.01919 0.98486 0.94205 1.22221 0.97569 0.91859 0.95963 1.62688 1.17842 1.42356 1.00874 1.22879 0.85428 0.99641 1.01234 1.19706 0.90105 0.81762 0.93989 0.93160 1.86653 1.73838 1.41569 1.35572 1.21509 0.93635 1.25520 1.19442 0.91216 1.24973 0.94379 0.95687 0.97000 1.69964 1.09303 1.34184 1.39765 0.87055 0.84135 0.78401 0.80849 1.21559 1.22285 1.13650 1.21191 1.00823 0.88079 0.93988 0.92452 0.92427 0.92621 0.91335 0.91398 0.86468 0.86107 0.86625 0.90851 0.90130 0.91122 0.90346 0.91389 0.94232 0.80042 0.92658 0.88993 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 37.16 0.37 -1.11 16 2 C -0.08 -0.81 6.07 -27.88 -0.17 -0.98 16 3 C -0.09 -1.14 5.13 -104.69 -0.54 -1.68 16 4 C -0.12 -1.61 9.71 -39.66 -0.38 -1.99 16 5 C -0.11 -1.60 9.65 -39.48 -0.38 -1.98 16 6 C -0.11 -1.66 5.19 -104.63 -0.54 -2.20 16 7 C -0.07 -1.05 5.05 -104.60 -0.53 -1.58 16 8 C -0.12 -1.60 9.31 -39.50 -0.37 -1.97 16 9 C -0.12 -1.60 5.16 -27.93 -0.14 -1.74 16 10 C 0.05 0.73 6.02 -3.73 -0.02 0.70 16 11 N -0.52 -8.82 4.88 -236.19 -1.15 -9.97 16 12 C 0.04 0.71 3.53 -3.82 -0.01 0.69 16 13 C 0.20 4.76 2.22 -27.88 -0.06 4.70 16 14 H 0.05 1.24 5.82 -51.93 -0.30 0.94 16 15 O -0.57 -13.17 10.00 -35.23 -0.35 -13.53 16 16 C -0.56 -15.79 9.34 -34.44 -0.32 -16.11 16 17 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 18 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 19 N -0.89 -27.61 13.96 55.43 0.77 -26.84 16 20 Si 0.87 22.09 26.99 -169.99 -4.59 17.50 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 23 H -0.21 -5.33 5.30 56.52 0.30 -5.03 16 24 C 0.09 1.42 5.43 -5.16 -0.03 1.39 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.17 7.06 -51.93 -0.37 0.80 16 35 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 38 H 0.04 0.83 5.91 -51.93 -0.31 0.52 16 39 H 0.35 7.34 9.04 45.56 0.41 7.75 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.09 1.65 6.09 -51.93 -0.32 1.33 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -31.63 328.07 -9.63 -41.26 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.02 Total: 8.14 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -3.23 Total: -21.52 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.38 Total: -36.80 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.35 Total: -13.53 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.59 Total: 17.50 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.63 -9.63 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656568696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.984 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds