Wall clock time and date at job start Mon Mar 30 2020 01:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47412 * 2 1 4 4 C 1.38257 * 120.08438 * 270.02418 * 3 2 1 5 5 C 1.38012 * 119.86384 * 180.02562 * 4 3 2 6 6 C 1.38735 * 120.37877 * 0.03589 * 5 4 3 7 7 C 1.37829 * 119.72986 * 359.79641 * 6 5 4 8 8 C 1.38032 * 120.08485 * 89.99787 * 3 2 1 9 9 C 1.50710 * 121.66171 * 180.27332 * 7 6 5 10 10 C 1.52896 * 109.96551 * 343.10676 * 9 7 6 11 11 N 1.47170 * 108.50628 * 50.38139 * 10 9 7 12 12 C 1.46898 * 110.99674 * 52.15141 * 11 10 9 13 13 C 1.53001 * 109.46893 * 170.00265 * 12 11 10 14 14 H 1.08999 * 109.47164 * 60.00204 * 13 12 11 15 15 O 1.42903 * 109.47171 * 299.99938 * 13 12 11 16 16 C 1.50707 * 109.47316 * 180.02562 * 13 12 11 17 17 H 1.07995 * 119.99310 * 359.97438 * 16 13 12 18 18 C 1.37872 * 119.99931 * 179.97438 * 16 13 12 19 19 N 1.31517 * 119.99867 * 179.97438 * 18 16 13 20 20 Si 1.86795 * 120.00226 * 359.97438 * 18 16 13 21 21 H 1.48500 * 109.47385 * 90.00022 * 20 18 16 22 22 H 1.48504 * 109.47165 * 209.99884 * 20 18 16 23 23 H 1.48500 * 109.47346 * 330.00169 * 20 18 16 24 24 C 1.46637 * 110.24449 * 288.74258 * 11 10 9 25 25 H 1.09003 * 109.47078 * 299.99786 * 1 2 3 26 26 H 1.09002 * 109.47170 * 59.99520 * 1 2 3 27 27 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47078 * 240.00213 * 2 1 3 29 29 H 1.09007 * 109.47037 * 120.00028 * 2 1 3 30 30 H 1.07991 * 120.06975 * 0.06842 * 4 3 2 31 31 H 1.08010 * 119.81025 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.82647 * 359.97438 * 8 3 2 33 33 H 1.08999 * 109.39269 * 222.95585 * 9 7 6 34 34 H 1.08997 * 109.38810 * 103.25743 * 9 7 6 35 35 H 1.08999 * 109.63347 * 290.68017 * 10 9 7 36 36 H 1.08994 * 109.63642 * 170.08607 * 10 9 7 37 37 H 1.08999 * 109.47049 * 50.00399 * 12 11 10 38 38 H 1.08997 * 109.47646 * 290.00448 * 12 11 10 39 39 H 0.96700 * 114.00311 * 300.00378 * 15 13 12 40 40 H 0.97000 * 120.00088 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.30013 * 172.87190 * 24 11 10 42 42 H 1.09001 * 109.29689 * 292.24083 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2630 2.0744 -1.1963 5 6 2.7236 3.3754 -1.1910 6 6 2.9576 4.0319 0.0085 7 6 2.7243 3.3810 1.2008 8 6 2.2630 2.0732 1.1944 9 6 2.9578 4.0544 2.5287 10 6 3.8374 5.2906 2.3396 11 7 3.2674 6.1083 1.2568 12 6 1.8431 6.3779 1.4947 13 6 1.3483 7.4250 0.4949 14 1 1.4826 7.0504 -0.5198 15 8 2.0956 8.6318 0.6601 16 6 -0.1128 7.7021 0.7394 17 1 -0.6360 7.1829 1.5286 18 6 -0.7812 8.6183 -0.0445 19 7 -2.0563 8.8598 0.1685 20 14 0.1242 9.5169 -1.4091 21 1 0.0215 8.7368 -2.6686 22 1 -0.4826 10.8578 -1.6065 23 1 1.5537 9.6703 -1.0373 24 6 3.4682 5.4482 -0.0371 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0824 1.5682 -2.1330 31 1 2.9030 3.8853 -2.1261 32 1 2.0821 1.5628 2.1289 33 1 3.4530 3.3582 3.2055 34 1 2.0007 4.3533 2.9561 35 1 4.8486 4.9833 2.0728 36 1 3.8592 5.8695 3.2629 37 1 1.7088 6.7524 2.5095 38 1 1.2731 5.4574 1.3688 39 1 2.0225 9.0222 1.5418 40 1 -2.5266 9.5047 -0.3828 41 1 2.9328 5.9997 -0.8099 42 1 4.5317 5.4399 -0.2761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656568696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:19 Heat of formation + Delta-G solvation = -51.449010 kcal Electronic energy + Delta-G solvation = -21792.677952 eV Core-core repulsion = 18735.973187 eV Total energy + Delta-G solvation = -3056.704765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49016 -39.02560 -37.33380 -34.72458 -34.40136 -33.64366 -31.22521 -30.59832 -29.57981 -27.32478 -25.42987 -24.30257 -23.60365 -22.77503 -21.93517 -19.98451 -19.10183 -17.33991 -17.06947 -16.77438 -16.55687 -16.32330 -15.90154 -15.46194 -15.39078 -14.91591 -14.84421 -14.66186 -14.37921 -14.06087 -13.66908 -13.60938 -13.41882 -13.07840 -12.94967 -12.87907 -12.63368 -12.47901 -12.21261 -12.11577 -11.92696 -11.75340 -11.70864 -11.49440 -11.00531 -10.80761 -10.11006 -9.64725 -9.31996 -9.15522 -8.35865 -6.50033 0.40301 0.45748 1.38522 1.44053 1.75333 2.43897 2.76283 3.01906 3.07304 3.71549 3.81252 3.94694 3.98610 4.06920 4.14997 4.21098 4.26743 4.31853 4.47785 4.50855 4.53063 4.57847 4.61346 4.69301 4.77528 4.87471 4.93137 4.97433 5.03865 5.04783 5.08257 5.17054 5.25388 5.35844 5.43111 5.48491 5.53438 5.68269 5.71266 6.08034 6.12796 6.15583 6.22319 6.62119 7.23198 7.39186 8.78599 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.005488 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.733275 B = 5101.145951 C = 5732.583634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.125 4.125 6 C -0.129 4.129 7 C -0.087 4.087 8 C -0.128 4.128 9 C -0.114 4.114 10 C 0.053 3.947 11 N -0.523 5.523 12 C 0.056 3.944 13 C 0.211 3.789 14 H 0.043 0.957 15 O -0.572 6.572 16 C -0.565 4.565 17 H 0.033 0.967 18 C 0.030 3.970 19 N -0.940 5.940 20 Si 0.936 3.064 21 H -0.287 1.287 22 H -0.296 1.296 23 H -0.203 1.203 24 C 0.090 3.910 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.366 0.634 40 H 0.267 0.733 41 H 0.070 0.930 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.751 -16.294 1.033 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.091 4.091 4 C -0.147 4.147 5 C -0.143 4.143 6 C -0.131 4.131 7 C -0.087 4.087 8 C -0.146 4.146 9 C -0.153 4.153 10 C -0.075 4.075 11 N -0.244 5.244 12 C -0.073 4.073 13 C 0.153 3.847 14 H 0.061 0.939 15 O -0.378 6.378 16 C -0.603 4.603 17 H 0.051 0.949 18 C -0.170 4.170 19 N -0.580 5.580 20 Si 0.760 3.240 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.124 1.124 24 C -0.038 4.038 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.213 0.787 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.043 -15.842 0.386 20.524 hybrid contribution -1.248 -0.100 -0.036 1.253 sum 11.794 -15.942 0.349 19.834 Atomic orbital electron populations 1.21749 0.94808 1.02418 1.01445 1.20548 0.95964 0.91165 1.03833 1.20145 0.98611 0.97505 0.92831 1.21198 1.00221 0.94738 0.98523 1.21299 0.99816 0.95522 0.97704 1.20535 1.01197 0.97724 0.93627 1.19753 0.99479 0.94633 0.94817 1.21163 1.00675 0.94214 0.98523 1.21113 1.01270 0.98783 0.94099 1.22328 0.98130 0.91763 0.95259 1.62621 1.15423 1.43991 1.02317 1.22450 0.87330 0.97650 0.99829 1.19460 0.87547 0.82970 0.94704 0.93894 1.86582 1.73198 1.41376 1.36679 1.21835 0.95999 1.24515 1.17967 0.94866 1.25827 0.94983 0.96730 0.99430 1.70086 1.11015 1.35507 1.41373 0.86027 0.83267 0.76918 0.77765 1.21374 1.22236 1.12449 1.21137 1.01567 0.88288 0.92857 0.93690 0.93480 0.90564 0.89793 0.89989 0.84464 0.85344 0.84974 0.88229 0.91672 0.89407 0.89246 0.91401 0.95828 0.78715 0.92471 0.91214 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.89 71.98 0.71 -1.96 16 2 C -0.08 -1.37 6.07 29.85 0.18 -1.19 16 3 C -0.09 -2.17 5.13 -19.91 -0.10 -2.28 16 4 C -0.13 -3.23 9.71 22.22 0.22 -3.02 16 5 C -0.12 -3.53 9.65 22.33 0.22 -3.32 16 6 C -0.13 -3.95 5.19 -19.87 -0.10 -4.05 16 7 C -0.09 -2.48 5.05 -19.85 -0.10 -2.58 16 8 C -0.13 -3.28 9.31 22.33 0.21 -3.07 16 9 C -0.11 -2.89 5.16 29.82 0.15 -2.74 16 10 C 0.05 1.36 6.02 86.22 0.52 1.88 16 11 N -0.52 -17.21 4.88 -901.16 -4.40 -21.61 16 12 C 0.06 2.20 3.53 86.30 0.30 2.51 16 13 C 0.21 9.94 2.22 29.85 0.07 10.01 16 14 H 0.04 2.12 5.82 -2.39 -0.01 2.10 16 15 O -0.57 -25.61 10.00 -148.98 -1.49 -27.10 16 16 C -0.57 -32.36 9.34 25.60 0.24 -32.12 16 17 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 18 C 0.03 1.76 5.47 84.65 0.46 2.22 16 19 N -0.94 -59.31 13.96 21.45 0.30 -59.01 16 20 Si 0.94 46.00 26.99 68.60 1.85 47.85 16 21 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.20 -9.51 5.30 99.48 0.53 -8.98 16 24 C 0.09 2.84 5.43 85.58 0.46 3.30 16 25 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 29 H 0.08 1.23 8.09 -2.38 -0.02 1.21 16 30 H 0.14 2.78 8.06 -2.92 -0.02 2.75 16 31 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.85 7.06 -2.39 -0.02 1.83 16 35 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.07 2.65 8.08 -2.39 -0.02 2.64 16 38 H 0.02 1.01 5.91 -2.39 -0.01 0.99 16 39 H 0.37 14.65 9.04 -74.06 -0.67 13.98 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.07 2.49 6.09 -2.39 -0.01 2.47 16 42 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -68.16 328.07 -0.15 -68.31 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.16 Total: 27.96 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 3.44 Total: -36.41 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -4.10 Total: -80.62 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -1.49 Total: -27.10 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.85 Total: 47.85 kcal Total: -68.16 -0.15 -68.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656568696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.863 kcal (2) G-P(sol) polarization free energy of solvation -68.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds