Wall clock time and date at job start Mon Mar 30 2020 02:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47312 * 2 1 4 4 C 1.50705 * 109.47119 * 119.99758 * 2 1 3 5 5 C 1.38290 * 119.94396 * 299.72789 * 4 2 1 6 6 C 1.38120 * 120.05586 * 180.28072 * 5 4 2 7 7 C 1.38751 * 119.94431 * 359.96849 * 6 5 4 8 8 O 1.35898 * 120.05487 * 180.02562 * 7 6 5 9 9 C 1.38716 * 119.88724 * 0.02681 * 7 6 5 10 10 C 1.50705 * 120.02328 * 179.97438 * 9 7 6 11 11 N 1.46496 * 109.47258 * 285.02077 * 10 9 7 12 12 C 1.36941 * 119.99485 * 90.00732 * 11 10 9 13 13 H 1.08004 * 119.99204 * 219.99828 * 12 11 10 14 14 C 1.38800 * 120.00431 * 39.99867 * 12 11 10 15 15 N 1.31620 * 120.00378 * 17.95835 * 14 12 11 16 16 Si 1.86804 * 120.00284 * 197.95811 * 14 12 11 17 17 H 1.48504 * 109.46958 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47450 * 119.99916 * 16 14 12 19 19 H 1.48502 * 109.47288 * 240.00106 * 16 14 12 20 20 C 1.46500 * 120.00284 * 270.00189 * 11 10 9 21 21 C 1.52999 * 117.49613 * 193.93323 * 20 11 10 22 22 C 1.52997 * 117.49782 * 125.30917 * 20 11 10 23 23 C 1.38165 * 119.94704 * 359.97438 * 9 7 6 24 24 H 1.09005 * 109.47218 * 60.00463 * 1 2 3 25 25 H 1.09001 * 109.47559 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47348 * 300.00269 * 1 2 3 27 27 H 1.09000 * 109.47348 * 239.99731 * 2 1 3 28 28 H 1.09003 * 109.47516 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47036 * 299.99612 * 3 2 1 30 30 H 1.09000 * 109.47134 * 59.99599 * 3 2 1 31 31 H 1.08001 * 119.96964 * 0.25229 * 5 4 2 32 32 H 1.07995 * 120.02668 * 179.97438 * 6 5 4 33 33 H 0.96704 * 114.00098 * 270.02155 * 8 7 6 34 34 H 1.09001 * 109.47033 * 45.02633 * 10 9 7 35 35 H 1.09005 * 109.46353 * 165.02454 * 10 9 7 36 36 H 0.96997 * 120.00861 * 174.96974 * 15 14 12 37 37 H 1.08999 * 115.54794 * 339.63975 * 20 11 10 38 38 H 1.08991 * 117.50162 * 0.02562 * 21 20 11 39 39 H 1.09001 * 117.49487 * 145.02025 * 21 20 11 40 40 H 1.08992 * 117.50219 * 214.97479 * 22 20 11 41 41 H 1.09000 * 117.49730 * 0.02562 * 22 20 11 42 42 H 1.07999 * 119.97369 * 179.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7021 -0.2336 2.4859 6 6 2.1660 -0.8795 3.6153 7 6 2.9634 -2.0080 3.4893 8 8 3.4207 -2.6455 4.5990 9 6 3.2931 -2.4843 2.2289 10 6 4.1594 -3.7094 2.0886 11 7 5.5496 -3.3619 2.3930 12 6 6.0146 -3.4611 3.6773 13 1 6.6778 -2.7052 4.0712 14 6 5.6337 -4.5330 4.4725 15 7 5.1331 -5.6176 3.9197 16 14 5.8313 -4.4366 6.3275 17 1 6.4136 -3.1209 6.6955 18 1 4.5040 -4.5897 6.9755 19 1 6.7343 -5.5226 6.7863 20 6 6.4424 -2.9084 1.3237 21 6 7.9424 -2.8736 1.6230 22 6 7.1528 -1.5673 1.5177 23 6 2.8265 -1.8346 1.1023 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.0814 0.6448 2.5834 32 1 1.9083 -0.5065 4.5954 33 1 4.2742 -2.3197 4.9162 34 1 3.8168 -4.4779 2.7815 35 1 4.0941 -4.0854 1.0675 36 1 4.9350 -6.3937 4.4667 37 1 6.1368 -3.1744 0.3118 38 1 8.2650 -3.1885 2.6154 39 1 8.6240 -3.1168 0.8079 40 1 7.3150 -0.9512 0.6334 41 1 6.9562 -1.0226 2.4411 42 1 3.0832 -2.2048 0.1208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657311363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:36 Heat of formation + Delta-G solvation = 3.066857 kcal Electronic energy + Delta-G solvation = -22144.714489 eV Core-core repulsion = 19090.373709 eV Total energy + Delta-G solvation = -3054.340780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83992 -38.68325 -37.96635 -35.56391 -35.11476 -33.18688 -31.33171 -29.67126 -27.89443 -27.25310 -25.43838 -23.64487 -22.94626 -22.91702 -21.65405 -20.38290 -19.02756 -18.08215 -17.38874 -16.72440 -16.59037 -16.23425 -15.81830 -15.49912 -15.02959 -14.78669 -14.49601 -14.24034 -14.02543 -13.61431 -13.54058 -13.11280 -13.02698 -12.90103 -12.73885 -12.59307 -12.43500 -12.26339 -12.16510 -11.88658 -11.85405 -11.60044 -11.46849 -11.42024 -10.95711 -10.92153 -10.39992 -9.59581 -9.09102 -8.37797 -7.81169 -5.45096 0.50998 0.59887 1.42766 1.48198 1.54806 2.46522 2.83469 3.23584 3.47913 3.62004 3.73126 3.89329 3.98804 4.15806 4.31047 4.34841 4.41789 4.50581 4.52237 4.58681 4.65058 4.76642 4.86672 4.88972 4.95358 5.05501 5.05813 5.06492 5.15973 5.22303 5.27619 5.36639 5.40935 5.47941 5.55561 5.56173 5.65978 5.76916 5.84227 5.94178 6.13828 6.51319 7.05769 7.18345 7.86508 8.41356 9.15887 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019238 B = 0.006504 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.112927 B = 4303.720441 C = 5097.154875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C -0.139 4.139 4 C -0.088 4.088 5 C -0.109 4.109 6 C -0.159 4.159 7 C 0.094 3.906 8 O -0.504 6.504 9 C -0.117 4.117 10 C 0.190 3.810 11 N -0.555 5.555 12 C -0.264 4.264 13 H 0.053 0.947 14 C 0.001 3.999 15 N -0.911 5.911 16 Si 0.938 3.062 17 H -0.260 1.260 18 H -0.290 1.290 19 H -0.295 1.295 20 C 0.104 3.896 21 C -0.193 4.193 22 C -0.203 4.203 23 C -0.111 4.111 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.145 0.855 32 H 0.130 0.870 33 H 0.384 0.616 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.251 0.749 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 12.636 -7.432 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.196 4.196 4 C -0.088 4.088 5 C -0.127 4.127 6 C -0.178 4.178 7 C 0.049 3.951 8 O -0.316 6.316 9 C -0.120 4.120 10 C 0.064 3.936 11 N -0.272 5.272 12 C -0.393 4.393 13 H 0.070 0.930 14 C -0.198 4.198 15 N -0.554 5.554 16 Si 0.767 3.233 17 H -0.184 1.184 18 H -0.217 1.217 19 H -0.223 1.223 20 C -0.004 4.004 21 C -0.232 4.232 22 C -0.243 4.243 23 C -0.130 4.130 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.148 0.852 33 H 0.243 0.757 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.964 12.141 -7.386 15.826 hybrid contribution 0.883 -0.439 1.454 1.757 sum -6.081 11.702 -5.932 14.461 Atomic orbital electron populations 1.21832 0.93442 1.01729 1.02683 1.20113 0.96542 0.96238 0.94089 1.21822 1.00654 0.94507 1.02645 1.20055 0.97672 0.95364 0.95692 1.20910 1.00615 1.00296 0.90896 1.21537 1.00857 0.95160 1.00232 1.18672 0.97452 0.92636 0.86369 1.84730 1.41138 1.62982 1.42768 1.21347 0.97648 0.99896 0.93076 1.19687 0.82946 0.92744 0.98207 1.43381 1.04501 1.75633 1.03656 1.18873 1.27960 1.03938 0.88545 0.92952 1.25679 0.98968 0.94156 1.01006 1.69945 1.46928 1.02868 1.35631 0.85700 0.76921 0.78159 0.82549 1.18395 1.21660 1.22271 1.21362 0.89407 0.97482 0.92174 1.23047 0.95742 1.02220 1.02144 1.23236 1.07562 0.91693 1.01830 1.20962 0.98646 0.96021 0.97358 0.90771 0.93495 0.92183 0.90501 0.93624 0.90792 0.92196 0.83767 0.85181 0.75744 0.90878 0.94904 0.93903 0.88322 0.90835 0.88214 0.88068 0.91677 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.01 71.98 0.65 -1.84 16 2 C -0.05 -1.08 3.09 -11.54 -0.04 -1.12 16 3 C -0.14 -2.52 9.00 71.98 0.65 -1.87 16 4 C -0.09 -2.51 4.78 -19.85 -0.09 -2.61 16 5 C -0.11 -3.11 8.70 22.25 0.19 -2.92 16 6 C -0.16 -5.46 9.99 22.36 0.22 -5.24 16 7 C 0.09 3.94 6.66 22.51 0.15 4.09 16 8 O -0.50 -23.44 10.84 -92.40 -1.00 -24.44 16 9 C -0.12 -4.90 5.48 -19.77 -0.11 -5.00 16 10 C 0.19 9.08 5.15 85.64 0.44 9.53 16 11 N -0.56 -26.84 2.75 -682.35 -1.88 -28.72 16 12 C -0.26 -13.61 5.85 84.03 0.49 -13.12 16 13 H 0.05 2.75 7.30 -2.91 -0.02 2.73 16 14 C 0.00 0.07 3.96 84.86 0.34 0.40 16 15 N -0.91 -52.56 11.42 21.65 0.25 -52.31 16 16 Si 0.94 43.64 28.12 68.60 1.93 45.57 16 17 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 18 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 19 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 20 C 0.10 4.35 6.61 44.99 0.30 4.65 16 21 C -0.19 -7.47 9.82 30.60 0.30 -7.17 16 22 C -0.20 -7.45 10.10 30.60 0.31 -7.14 16 23 C -0.11 -3.84 9.29 22.25 0.21 -3.63 16 24 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 1.01 7.39 -2.39 -0.02 1.00 16 27 H 0.08 1.59 7.87 -2.39 -0.02 1.57 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.03 7.37 -2.39 -0.02 1.01 16 31 H 0.14 3.17 7.09 -2.91 -0.02 3.15 16 32 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 33 H 0.38 17.46 6.11 -74.05 -0.45 17.01 16 34 H 0.07 4.11 5.43 -2.39 -0.01 4.09 16 35 H 0.03 1.49 7.85 -2.38 -0.02 1.48 16 36 H 0.25 14.22 8.32 -92.71 -0.77 13.45 16 37 H 0.10 3.80 8.10 -2.39 -0.02 3.78 16 38 H 0.07 3.23 6.99 -2.39 -0.02 3.21 16 39 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.06 2.62 7.99 -2.39 -0.02 2.60 16 42 H 0.12 3.89 7.88 -2.91 -0.02 3.87 16 Total: -1.00 -60.63 334.57 3.85 -56.77 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: 0.55 Total: 36.11 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.01 Total: -32.98 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -1.63 Total: -81.03 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.00 Total: -24.44 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.93 Total: 45.57 kcal Total: -60.63 3.85 -56.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657311363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.838 kcal (2) G-P(sol) polarization free energy of solvation -60.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds