Wall clock time and date at job start Mon Mar 30 2020 01:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.48099 * 2 1 4 4 N 1.46496 * 109.47002 * 305.02145 * 3 2 1 5 5 C 1.39683 * 119.99998 * 179.97438 * 4 3 2 6 6 C 1.39339 * 119.95179 * 0.02562 * 5 4 3 7 7 C 1.38475 * 120.42415 * 179.72767 * 6 5 4 8 8 C 1.37680 * 120.32623 * 0.27061 * 7 6 5 9 9 C 1.40750 * 119.89825 * 359.97438 * 8 7 6 10 10 C 1.41405 * 120.21365 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99864 * 204.46399 * 10 9 8 12 12 C 1.39925 * 120.00036 * 24.46694 * 10 9 8 13 13 N 1.30827 * 119.99937 * 17.88182 * 12 10 9 14 14 Si 1.86797 * 120.00228 * 197.88710 * 12 10 9 15 15 H 1.48499 * 109.47497 * 94.68716 * 14 12 10 16 16 H 1.48497 * 109.47250 * 214.68986 * 14 12 10 17 17 H 1.48506 * 109.47094 * 334.68887 * 14 12 10 18 18 C 1.38283 * 119.95315 * 180.27898 * 5 4 3 19 19 C 1.53096 * 109.47977 * 120.02269 * 2 1 3 20 20 C 1.53171 * 109.16539 * 62.38819 * 19 2 1 21 21 C 1.53184 * 109.03727 * 56.97838 * 20 19 2 22 22 C 1.53097 * 109.16275 * 303.02490 * 21 20 19 23 23 O 1.42900 * 109.41339 * 57.60580 * 22 21 20 24 24 H 1.09002 * 109.46752 * 60.00199 * 1 2 3 25 25 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47321 * 300.00085 * 1 2 3 27 27 H 1.08999 * 109.46887 * 185.01930 * 3 2 1 28 28 H 1.09004 * 109.47253 * 65.02154 * 3 2 1 29 29 H 0.96999 * 119.99792 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.78752 * 359.97438 * 6 5 4 31 31 H 1.08004 * 119.83393 * 180.29845 * 7 6 5 32 32 H 1.08004 * 120.05734 * 179.97438 * 8 7 6 33 33 H 0.97002 * 120.00349 * 180.02562 * 13 12 10 34 34 H 1.07991 * 120.16306 * 359.97438 * 18 5 4 35 35 H 1.09002 * 109.52387 * 182.29544 * 19 2 1 36 36 H 1.08999 * 109.52095 * 302.47910 * 19 2 1 37 37 H 1.08994 * 109.54841 * 176.85208 * 20 19 2 38 38 H 1.09003 * 109.54023 * 297.02579 * 20 19 2 39 39 H 1.08996 * 109.51726 * 62.92730 * 21 20 19 40 40 H 1.09000 * 109.52270 * 183.11627 * 21 20 19 41 41 H 1.08997 * 109.47818 * 177.59333 * 22 21 20 42 42 H 1.09004 * 109.47770 * 297.61412 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 1.4558 2.1671 -1.1311 5 6 1.7752 3.5108 -1.3398 6 6 2.6503 4.1608 -0.4719 7 6 2.9781 5.4911 -0.6729 8 6 2.4381 6.1880 -1.7303 9 6 1.5487 5.5464 -2.6125 10 6 0.9897 6.2560 -3.7004 11 1 0.0515 5.9358 -4.1290 12 6 1.6522 7.3728 -4.2217 13 7 2.9204 7.5615 -3.9616 14 14 0.7258 8.5944 -5.2889 15 1 0.2334 9.7139 -4.4465 16 1 1.6347 9.1256 -6.3362 17 1 -0.4273 7.9149 -5.9323 18 6 1.2185 4.1955 -2.4045 19 6 2.0405 -0.7222 1.2497 20 6 1.5760 -2.1813 1.2123 21 6 2.0770 -2.8322 -0.0807 22 6 1.5650 -2.0285 -1.2790 23 8 2.0069 -0.6742 -1.1662 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.1265 1.4435 -0.0899 28 1 1.7522 1.9297 0.9316 29 1 0.8470 1.7138 -1.7351 30 1 3.0787 3.6225 0.3606 31 1 3.6612 5.9842 0.0030 32 1 2.6965 7.2256 -1.8828 33 1 3.3796 8.3359 -4.3226 34 1 0.5373 3.6939 -3.0757 35 1 3.1297 -0.6871 1.2712 36 1 1.6418 -0.2356 2.1399 37 1 1.9826 -2.7156 2.0708 38 1 0.4870 -2.2181 1.2424 39 1 3.1669 -2.8397 -0.0860 40 1 1.7044 -3.8547 -0.1419 41 1 1.9537 -2.4622 -2.2003 42 1 0.4755 -2.0553 -1.2959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659811992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:38 Heat of formation + Delta-G solvation = -38.644204 kcal Electronic energy + Delta-G solvation = -21157.247818 eV Core-core repulsion = 18101.098311 eV Total energy + Delta-G solvation = -3056.149507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13065 -37.66017 -35.20978 -33.81067 -33.38667 -31.85729 -29.68239 -28.37875 -27.81863 -25.49719 -25.03463 -24.04227 -21.91461 -20.64797 -19.92642 -19.24911 -17.30556 -16.33915 -16.26142 -15.41852 -15.17705 -14.97015 -14.54019 -14.49958 -14.15148 -13.47107 -13.25107 -12.97462 -12.81337 -12.54806 -12.51379 -12.23564 -11.99394 -11.74551 -11.50171 -11.30467 -11.18401 -11.07908 -11.01250 -10.79744 -10.49986 -10.34608 -10.12809 -9.71310 -9.43853 -9.23537 -9.14010 -8.63880 -7.31119 -6.64590 -6.10340 -4.24187 2.90985 3.13907 3.17997 3.29580 3.44791 3.69450 4.01878 4.23225 4.58988 4.62400 4.67520 4.78770 4.86860 4.92613 5.06118 5.24047 5.32769 5.44520 5.55051 5.63290 5.70517 5.77486 5.81377 5.86517 5.91067 5.97182 6.05260 6.09832 6.27473 6.39920 6.62358 7.11561 7.13589 7.18674 7.25481 7.42219 7.49127 7.87187 7.99683 8.21858 8.32898 8.59239 8.74490 8.86943 9.07356 9.20172 10.31588 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037225 B = 0.003459 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.997662 B = 8092.494201 C = 8456.279681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 C 0.154 3.846 4 N -0.756 5.756 5 C 0.227 3.773 6 C -0.303 4.303 7 C -0.075 4.075 8 C -0.201 4.201 9 C 0.142 3.858 10 C -0.465 4.465 11 H 0.075 0.925 12 C 0.078 3.922 13 N -0.792 5.792 14 Si 0.906 3.094 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.263 1.263 18 C -0.290 4.290 19 C -0.141 4.141 20 C -0.122 4.122 21 C -0.156 4.156 22 C 0.056 3.944 23 O -0.364 6.364 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.390 0.610 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.278 0.722 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.764 -15.848 7.964 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.066 3.934 3 C 0.028 3.972 4 N -0.390 5.390 5 C 0.128 3.872 6 C -0.326 4.326 7 C -0.094 4.094 8 C -0.221 4.221 9 C 0.139 3.861 10 C -0.495 4.495 11 H 0.093 0.907 12 C -0.140 4.140 13 N -0.418 5.418 14 Si 0.730 3.270 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.313 4.313 19 C -0.180 4.180 20 C -0.159 4.159 21 C -0.194 4.194 22 C -0.021 4.021 23 O -0.283 6.283 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.224 0.776 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.330 -15.632 7.929 17.682 hybrid contribution -0.613 0.170 -0.532 0.829 sum -2.943 -15.463 7.397 17.392 Atomic orbital electron populations 1.22409 0.95544 1.02035 1.03462 1.21736 0.93441 0.92469 0.85731 1.21005 0.97936 0.87402 0.90847 1.44356 1.53857 1.09252 1.31538 1.17475 0.93627 0.82264 0.93852 1.19848 1.11353 0.96515 1.04873 1.20426 0.98147 0.93762 0.97057 1.21159 1.04506 1.00152 0.96289 1.17332 0.88804 0.89511 0.90466 1.19558 1.06853 1.09416 1.13710 0.90676 1.25882 0.94305 0.97813 0.95988 1.69871 1.08719 1.26057 1.37148 0.86353 0.80358 0.80655 0.79599 1.19442 1.20421 1.18682 1.20384 1.12824 0.95505 1.02634 1.22112 1.02046 0.95788 0.98005 1.21602 1.01015 0.95602 0.97693 1.22188 1.02004 0.99416 0.95748 1.22568 0.98697 0.82767 0.98081 1.88090 1.73330 1.23970 1.42904 0.91378 0.92150 0.91307 0.92573 0.91984 0.77590 0.89804 0.89738 0.86828 0.91122 0.89409 0.90816 0.90686 0.91624 0.91622 0.91102 0.91206 0.89104 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 7.71 37.15 0.29 -1.72 16 2 C 0.11 1.33 0.78 -90.57 -0.07 1.26 16 3 C 0.15 2.41 4.08 -4.04 -0.02 2.40 16 4 N -0.76 -14.33 5.37 -58.68 -0.31 -14.65 16 5 C 0.23 5.31 6.64 -83.85 -0.56 4.75 16 6 C -0.30 -7.14 9.32 -39.08 -0.36 -7.50 16 7 C -0.07 -1.86 10.01 -39.70 -0.40 -2.25 16 8 C -0.20 -5.48 8.70 -38.84 -0.34 -5.82 16 9 C 0.14 3.97 5.57 -106.85 -0.60 3.37 16 10 C -0.47 -12.88 9.05 -37.75 -0.34 -13.22 16 11 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 12 C 0.08 2.02 5.14 -17.35 -0.09 1.93 16 13 N -0.79 -21.29 10.96 55.55 0.61 -20.68 16 14 Si 0.91 19.28 29.59 -169.99 -5.03 14.25 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 18 C -0.29 -7.48 9.63 -38.67 -0.37 -7.85 16 19 C -0.14 -1.43 4.92 -26.59 -0.13 -1.56 16 20 C -0.12 -1.02 5.72 -26.55 -0.15 -1.18 16 21 C -0.16 -1.33 6.14 -26.59 -0.16 -1.50 16 22 C 0.06 0.57 6.52 37.21 0.24 0.81 16 23 O -0.36 -5.05 10.18 -35.23 -0.36 -5.41 16 24 H 0.07 0.86 6.57 -51.93 -0.34 0.52 16 25 H 0.06 0.58 4.98 -51.93 -0.26 0.32 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 28 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 29 H 0.39 7.03 6.99 -40.82 -0.29 6.74 16 30 H 0.08 1.78 6.70 -52.49 -0.35 1.43 16 31 H 0.08 1.88 8.06 -52.48 -0.42 1.45 16 32 H 0.11 3.19 6.15 -52.48 -0.32 2.87 16 33 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 34 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.52 6.62 -51.93 -0.34 0.18 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.49 6.34 -51.93 -0.33 0.16 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -29.56 326.90 -9.64 -39.20 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.41 Total: 10.44 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -3.06 Total: -28.08 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.29 Total: -35.33 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.36 Total: -5.41 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.56 -9.64 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659811992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.554 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds