Wall clock time and date at job start Mon Mar 30 2020 01:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.48099 * 2 1 4 4 N 1.46496 * 109.47002 * 305.02145 * 3 2 1 5 5 C 1.39683 * 119.99998 * 179.97438 * 4 3 2 6 6 C 1.39339 * 119.95179 * 0.02562 * 5 4 3 7 7 C 1.38475 * 120.42415 * 179.72767 * 6 5 4 8 8 C 1.37680 * 120.32623 * 0.27061 * 7 6 5 9 9 C 1.40750 * 119.89825 * 359.97438 * 8 7 6 10 10 C 1.41405 * 120.21365 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99864 * 204.46399 * 10 9 8 12 12 C 1.39925 * 120.00036 * 24.46694 * 10 9 8 13 13 N 1.30827 * 119.99937 * 17.88182 * 12 10 9 14 14 Si 1.86797 * 120.00228 * 197.88710 * 12 10 9 15 15 H 1.48499 * 109.47497 * 94.68716 * 14 12 10 16 16 H 1.48497 * 109.47250 * 214.68986 * 14 12 10 17 17 H 1.48506 * 109.47094 * 334.68887 * 14 12 10 18 18 C 1.38283 * 119.95315 * 180.27898 * 5 4 3 19 19 C 1.53096 * 109.47977 * 120.02269 * 2 1 3 20 20 C 1.53171 * 109.16539 * 62.38819 * 19 2 1 21 21 C 1.53184 * 109.03727 * 56.97838 * 20 19 2 22 22 C 1.53097 * 109.16275 * 303.02490 * 21 20 19 23 23 O 1.42900 * 109.41339 * 57.60580 * 22 21 20 24 24 H 1.09002 * 109.46752 * 60.00199 * 1 2 3 25 25 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47321 * 300.00085 * 1 2 3 27 27 H 1.08999 * 109.46887 * 185.01930 * 3 2 1 28 28 H 1.09004 * 109.47253 * 65.02154 * 3 2 1 29 29 H 0.96999 * 119.99792 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.78752 * 359.97438 * 6 5 4 31 31 H 1.08004 * 119.83393 * 180.29845 * 7 6 5 32 32 H 1.08004 * 120.05734 * 179.97438 * 8 7 6 33 33 H 0.97002 * 120.00349 * 180.02562 * 13 12 10 34 34 H 1.07991 * 120.16306 * 359.97438 * 18 5 4 35 35 H 1.09002 * 109.52387 * 182.29544 * 19 2 1 36 36 H 1.08999 * 109.52095 * 302.47910 * 19 2 1 37 37 H 1.08994 * 109.54841 * 176.85208 * 20 19 2 38 38 H 1.09003 * 109.54023 * 297.02579 * 20 19 2 39 39 H 1.08996 * 109.51726 * 62.92730 * 21 20 19 40 40 H 1.09000 * 109.52270 * 183.11627 * 21 20 19 41 41 H 1.08997 * 109.47818 * 177.59333 * 22 21 20 42 42 H 1.09004 * 109.47770 * 297.61412 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 1.4558 2.1671 -1.1311 5 6 1.7752 3.5108 -1.3398 6 6 2.6503 4.1608 -0.4719 7 6 2.9781 5.4911 -0.6729 8 6 2.4381 6.1880 -1.7303 9 6 1.5487 5.5464 -2.6125 10 6 0.9897 6.2560 -3.7004 11 1 0.0515 5.9358 -4.1290 12 6 1.6522 7.3728 -4.2217 13 7 2.9204 7.5615 -3.9616 14 14 0.7258 8.5944 -5.2889 15 1 0.2334 9.7139 -4.4465 16 1 1.6347 9.1256 -6.3362 17 1 -0.4273 7.9149 -5.9323 18 6 1.2185 4.1955 -2.4045 19 6 2.0405 -0.7222 1.2497 20 6 1.5760 -2.1813 1.2123 21 6 2.0770 -2.8322 -0.0807 22 6 1.5650 -2.0285 -1.2790 23 8 2.0069 -0.6742 -1.1662 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.1265 1.4435 -0.0899 28 1 1.7522 1.9297 0.9316 29 1 0.8470 1.7138 -1.7351 30 1 3.0787 3.6225 0.3606 31 1 3.6612 5.9842 0.0030 32 1 2.6965 7.2256 -1.8828 33 1 3.3796 8.3359 -4.3226 34 1 0.5373 3.6939 -3.0757 35 1 3.1297 -0.6871 1.2712 36 1 1.6418 -0.2356 2.1399 37 1 1.9826 -2.7156 2.0708 38 1 0.4870 -2.2181 1.2424 39 1 3.1669 -2.8397 -0.0860 40 1 1.7044 -3.8547 -0.1419 41 1 1.9537 -2.4622 -2.2003 42 1 0.4755 -2.0553 -1.2959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659811992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:38 Heat of formation + Delta-G solvation = -55.194135 kcal Electronic energy + Delta-G solvation = -21157.965477 eV Core-core repulsion = 18101.098311 eV Total energy + Delta-G solvation = -3056.867166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07686 -39.49157 -36.79641 -35.13004 -34.62597 -33.17001 -31.67378 -29.66413 -29.00917 -27.16046 -26.67623 -24.88831 -23.11021 -22.48313 -21.67364 -20.09819 -19.16804 -17.63250 -17.29997 -17.17430 -16.38042 -16.32443 -16.11078 -15.59480 -15.42488 -14.73469 -14.63488 -14.60265 -14.00091 -13.95382 -13.63735 -13.54400 -13.38399 -13.10993 -12.86721 -12.78352 -12.55350 -12.47417 -12.14627 -12.06452 -11.91249 -11.68587 -11.56448 -11.19333 -11.08077 -10.96704 -10.45785 -10.30839 -9.33379 -8.60141 -7.91877 -6.32032 1.05304 1.35502 1.39493 1.53253 1.60481 2.23501 2.73083 2.80813 2.84484 3.67852 3.85380 3.86438 3.91205 3.96539 4.10249 4.26639 4.48197 4.49849 4.54066 4.62110 4.66747 4.73104 4.76551 4.86071 4.92501 4.98601 5.05258 5.12027 5.13627 5.17359 5.18746 5.24034 5.26590 5.42735 5.46958 5.60211 5.95048 6.03446 6.20898 6.31530 6.36945 6.63717 6.90409 7.03028 7.04974 7.25380 8.38449 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037225 B = 0.003459 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.997662 B = 8092.494201 C = 8456.279681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 C 0.148 3.852 4 N -0.746 5.746 5 C 0.234 3.766 6 C -0.305 4.305 7 C -0.074 4.074 8 C -0.233 4.233 9 C 0.114 3.886 10 C -0.504 4.504 11 H 0.071 0.929 12 C 0.035 3.965 13 N -0.824 5.824 14 Si 0.984 3.016 15 H -0.261 1.261 16 H -0.267 1.267 17 H -0.259 1.259 18 C -0.314 4.314 19 C -0.139 4.139 20 C -0.119 4.119 21 C -0.152 4.152 22 C 0.048 3.952 23 O -0.396 6.396 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.394 0.606 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.287 0.713 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -17.291 8.942 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.070 3.930 3 C 0.023 3.977 4 N -0.379 5.379 5 C 0.132 3.868 6 C -0.329 4.329 7 C -0.093 4.093 8 C -0.254 4.254 9 C 0.111 3.889 10 C -0.534 4.534 11 H 0.090 0.910 12 C -0.179 4.179 13 N -0.450 5.450 14 Si 0.805 3.195 15 H -0.186 1.186 16 H -0.191 1.191 17 H -0.183 1.183 18 C -0.339 4.339 19 C -0.177 4.177 20 C -0.156 4.156 21 C -0.190 4.190 22 C -0.028 4.028 23 O -0.316 6.316 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.229 0.771 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.906 -17.130 8.930 19.535 hybrid contribution -0.379 0.473 -0.777 0.986 sum -3.285 -16.656 8.153 18.833 Atomic orbital electron populations 1.22385 0.94590 1.03239 1.02924 1.21678 0.94037 0.90595 0.86691 1.21230 0.97161 0.89517 0.89749 1.44440 1.53322 1.07735 1.32362 1.17568 0.92480 0.84005 0.92705 1.20152 1.10991 0.96230 1.05483 1.20727 0.97735 0.94359 0.96465 1.21102 1.06439 0.99847 0.97991 1.17694 0.89506 0.90603 0.91072 1.19816 1.07375 1.11406 1.14768 0.91047 1.26780 0.94968 0.99033 0.97158 1.69926 1.10124 1.26873 1.38054 0.85179 0.78901 0.77726 0.77744 1.18599 1.19134 1.18294 1.20497 1.13943 0.95379 1.04040 1.22103 1.01652 0.96976 0.96996 1.21619 1.01622 0.94250 0.98139 1.22166 1.01548 1.00258 0.95002 1.22784 0.99350 0.81389 0.99285 1.88034 1.74026 1.25897 1.43625 0.93089 0.90113 0.90616 0.93781 0.90937 0.77091 0.87066 0.87294 0.88494 0.90255 0.89483 0.91516 0.89452 0.90032 0.90698 0.91882 0.89057 0.88714 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.58 7.71 71.98 0.55 -3.03 16 2 C 0.11 2.55 0.78 -10.76 -0.01 2.54 16 3 C 0.15 4.45 4.08 86.38 0.35 4.80 16 4 N -0.75 -27.93 5.37 -339.57 -1.82 -29.75 16 5 C 0.23 11.00 6.64 38.17 0.25 11.26 16 6 C -0.31 -14.20 9.32 22.59 0.21 -13.99 16 7 C -0.07 -3.68 10.01 22.19 0.22 -3.46 16 8 C -0.23 -13.16 8.70 22.75 0.20 -12.96 16 9 C 0.11 6.63 5.57 -21.31 -0.12 6.51 16 10 C -0.50 -28.97 9.05 23.46 0.21 -28.75 16 11 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 12 C 0.04 1.88 5.14 85.25 0.44 2.32 16 13 N -0.82 -45.39 10.96 21.82 0.24 -45.15 16 14 Si 0.98 40.00 29.59 68.60 2.03 42.03 16 15 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 16 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 17 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 18 C -0.31 -16.74 9.63 22.86 0.22 -16.52 16 19 C -0.14 -2.47 4.92 30.68 0.15 -2.32 16 20 C -0.12 -1.61 5.72 30.71 0.18 -1.43 16 21 C -0.15 -2.18 6.14 30.69 0.19 -2.00 16 22 C 0.05 0.89 6.52 72.01 0.47 1.36 16 23 O -0.40 -10.51 10.18 -148.98 -1.52 -12.02 16 24 H 0.05 1.22 6.57 -2.39 -0.02 1.20 16 25 H 0.08 1.32 4.98 -2.39 -0.01 1.31 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.04 1.45 7.94 -2.39 -0.02 1.43 16 28 H 0.07 2.05 7.94 -2.39 -0.02 2.03 16 29 H 0.39 14.15 6.99 -92.71 -0.65 13.50 16 30 H 0.11 4.50 6.70 -2.91 -0.02 4.48 16 31 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.10 5.69 6.15 -2.91 -0.02 5.67 16 33 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 34 H 0.09 4.49 8.06 -2.92 -0.02 4.46 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.90 6.62 -2.39 -0.02 0.88 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.00 6.34 -2.39 -0.02 0.98 16 Total: -1.00 -65.53 326.90 2.81 -62.72 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: 0.36 Total: 37.85 kcal Atomic # 6 Polarization: -59.19 SS G_CDS: 3.52 Total: -55.67 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -1.58 Total: -74.91 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -1.52 Total: -12.02 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -65.53 2.81 -62.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659811992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.527 kcal (2) G-P(sol) polarization free energy of solvation -65.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds