Wall clock time and date at job start Mon Mar 30 2020 01:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.48162 * 2 1 4 4 N 1.46500 * 109.46998 * 59.99978 * 3 2 1 5 5 C 1.39683 * 119.99915 * 179.97438 * 4 3 2 6 6 C 1.39338 * 119.95489 * 0.02562 * 5 4 3 7 7 C 1.38478 * 120.42470 * 179.97438 * 6 5 4 8 8 C 1.37681 * 120.32885 * 359.97438 * 7 6 5 9 9 C 1.40747 * 119.89056 * 0.02562 * 8 7 6 10 10 C 1.41415 * 120.20659 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99989 * 150.21546 * 10 9 8 12 12 C 1.39931 * 119.99640 * 330.20646 * 10 9 8 13 13 N 1.30836 * 119.99337 * 161.72442 * 12 10 9 14 14 Si 1.86792 * 120.00335 * 341.72614 * 12 10 9 15 15 H 1.48508 * 109.47083 * 95.41030 * 14 12 10 16 16 H 1.48496 * 109.47324 * 215.41050 * 14 12 10 17 17 H 1.48498 * 109.47338 * 335.41271 * 14 12 10 18 18 C 1.38280 * 119.95079 * 179.72673 * 5 4 3 19 19 C 1.53095 * 109.48085 * 239.96666 * 2 1 3 20 20 C 1.53174 * 109.16317 * 297.62762 * 19 2 1 21 21 C 1.53181 * 109.03575 * 303.01713 * 20 19 2 22 22 C 1.53095 * 109.16336 * 56.98015 * 21 20 19 23 23 O 1.42901 * 109.41275 * 302.39338 * 22 21 20 24 24 H 1.09003 * 109.46927 * 299.97486 * 1 2 3 25 25 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47335 * 59.97745 * 1 2 3 27 27 H 1.09006 * 109.47532 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47485 * 300.00233 * 3 2 1 29 29 H 0.97001 * 120.00133 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.78549 * 359.95353 * 6 5 4 31 31 H 1.08004 * 119.83538 * 179.97438 * 7 6 5 32 32 H 1.08000 * 120.05583 * 180.02562 * 8 7 6 33 33 H 0.96999 * 119.99232 * 180.02562 * 13 12 10 34 34 H 1.07998 * 120.16408 * 0.02562 * 18 5 4 35 35 H 1.09003 * 109.51926 * 57.52820 * 19 2 1 36 36 H 1.08998 * 109.52327 * 177.72046 * 19 2 1 37 37 H 1.08999 * 109.54611 * 183.15463 * 20 19 2 38 38 H 1.09001 * 109.54830 * 62.88360 * 20 19 2 39 39 H 1.08998 * 109.52236 * 297.07875 * 21 20 19 40 40 H 1.09001 * 109.52079 * 176.88634 * 21 20 19 41 41 H 1.08998 * 109.48295 * 182.40827 * 22 21 20 42 42 H 1.09004 * 109.48799 * 62.38006 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 1.5520 2.1330 1.1962 5 6 1.8901 3.4701 1.4175 6 6 2.6914 4.1463 0.4997 7 6 3.0321 5.4720 0.7092 8 6 2.5819 6.1372 1.8274 9 6 1.7718 5.4674 2.7633 10 6 1.3053 6.1443 3.9140 11 1 0.3631 5.8634 4.3609 12 6 2.0646 7.1780 4.4735 13 7 1.5045 8.0323 5.2910 14 14 3.8776 7.3381 4.0533 15 1 4.0441 8.3078 2.9409 16 1 4.6213 7.8195 5.2451 17 1 4.4087 6.0145 3.6397 18 6 1.4241 4.1227 2.5440 19 6 2.0405 -0.7224 -1.2495 20 6 1.5757 -2.1814 -1.2120 21 6 2.0765 -2.8322 0.0811 22 6 1.5646 -2.0283 1.2792 23 8 2.0066 -0.6741 1.1664 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5142 -0.8898 27 1 3.1303 1.4423 0.0005 28 1 1.6770 1.9563 -0.8899 29 1 0.9946 1.6616 1.8349 30 1 3.0493 3.6329 -0.3805 31 1 3.6541 5.9868 -0.0082 32 1 2.8500 7.1713 1.9862 33 1 2.0308 8.7490 5.6786 34 1 0.7993 3.6011 3.2539 35 1 1.6420 -0.2359 -2.1398 36 1 3.1298 -0.6875 -1.2709 37 1 1.9825 -2.7159 -2.0704 38 1 0.4867 -2.2181 -1.2406 39 1 3.1664 -2.8399 0.0866 40 1 1.7036 -3.8547 0.1423 41 1 1.9531 -2.4620 2.2007 42 1 0.4750 -2.0549 1.2962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659811993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:42 Heat of formation + Delta-G solvation = -38.570575 kcal Electronic energy + Delta-G solvation = -21256.924634 eV Core-core repulsion = 18200.778319 eV Total energy + Delta-G solvation = -3056.146314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20129 -37.93704 -35.32127 -33.87286 -33.38353 -32.14709 -30.10861 -28.59002 -28.12399 -25.66466 -24.93730 -24.12733 -21.97478 -20.99058 -20.00406 -19.31715 -17.46287 -16.43141 -16.32537 -15.78568 -15.22260 -15.11138 -14.59800 -14.46982 -14.37014 -13.63140 -13.46513 -13.01323 -12.86862 -12.75661 -12.47078 -12.44203 -12.23103 -11.88189 -11.73225 -11.38065 -11.36472 -11.22003 -10.94577 -10.74859 -10.64882 -10.34657 -10.18813 -9.70055 -9.50782 -9.42380 -9.16967 -8.80784 -7.51774 -6.82071 -6.35589 -4.37396 2.77214 3.00536 3.23729 3.33871 3.46445 3.61149 4.09329 4.12860 4.52200 4.57138 4.61628 4.67734 4.78358 4.86339 4.99403 5.18946 5.27194 5.38731 5.49446 5.57933 5.60077 5.64831 5.72390 5.74974 5.80836 5.90628 5.94096 6.00949 6.12201 6.20624 6.40191 6.65738 6.87862 6.93923 7.07128 7.18341 7.41262 7.66051 7.77783 7.88131 8.07584 8.44022 8.54316 8.60204 8.86492 8.99298 10.20999 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.003729 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.851733 B = 7507.262094 C = 7727.679978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.106 3.894 3 C 0.152 3.848 4 N -0.752 5.752 5 C 0.238 3.762 6 C -0.302 4.302 7 C -0.048 4.048 8 C -0.273 4.273 9 C 0.126 3.874 10 C -0.452 4.452 11 H 0.088 0.912 12 C 0.086 3.914 13 N -0.816 5.816 14 Si 0.915 3.085 15 H -0.272 1.272 16 H -0.295 1.295 17 H -0.244 1.244 18 C -0.278 4.278 19 C -0.141 4.141 20 C -0.122 4.122 21 C -0.156 4.156 22 C 0.056 3.944 23 O -0.364 6.364 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.393 0.607 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.283 0.717 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -18.161 -11.035 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.066 3.934 3 C 0.026 3.974 4 N -0.386 5.386 5 C 0.138 3.862 6 C -0.325 4.325 7 C -0.067 4.067 8 C -0.293 4.293 9 C 0.123 3.877 10 C -0.481 4.481 11 H 0.106 0.894 12 C -0.132 4.132 13 N -0.440 5.440 14 Si 0.742 3.258 15 H -0.198 1.198 16 H -0.223 1.223 17 H -0.167 1.167 18 C -0.302 4.302 19 C -0.180 4.180 20 C -0.159 4.159 21 C -0.194 4.194 22 C -0.021 4.021 23 O -0.283 6.283 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.228 0.772 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.646 -17.896 -10.882 20.954 hybrid contribution 0.390 -0.143 -0.065 0.420 sum 1.035 -18.039 -10.946 21.126 Atomic orbital electron populations 1.22422 0.95445 1.02166 1.03489 1.21729 0.93478 0.92330 0.85849 1.21067 0.98709 0.87965 0.89622 1.44363 1.59051 1.09927 1.25213 1.17554 0.92713 0.82564 0.93400 1.19893 1.13544 0.96268 1.02797 1.20352 0.96680 0.93699 0.95967 1.20883 1.11024 0.99201 0.98220 1.17442 0.88387 0.90220 0.91684 1.19448 1.06861 1.12462 1.09317 0.89449 1.26131 1.01442 0.92598 0.93050 1.69717 1.38406 1.11008 1.24913 0.86274 0.81875 0.80885 0.76792 1.19840 1.22282 1.16723 1.20388 1.14257 0.95397 1.00151 1.22112 1.02029 0.95848 0.97965 1.21604 1.01042 0.95551 0.97727 1.22189 1.02009 0.99461 0.95718 1.22576 0.98734 0.82656 0.98127 1.88077 1.73358 1.24072 1.42800 0.91342 0.92073 0.91319 0.92485 0.91801 0.77241 0.89140 0.89116 0.88609 0.90699 0.88594 0.90672 0.90814 0.91581 0.91587 0.91102 0.91159 0.89044 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 7.76 37.16 0.29 -1.59 16 2 C 0.11 1.23 0.76 -90.57 -0.07 1.16 16 3 C 0.15 2.20 4.05 -4.04 -0.02 2.18 16 4 N -0.75 -13.31 5.32 -58.68 -0.31 -13.63 16 5 C 0.24 5.21 6.64 -83.86 -0.56 4.65 16 6 C -0.30 -6.57 9.32 -39.08 -0.36 -6.94 16 7 C -0.05 -1.10 10.01 -39.70 -0.40 -1.49 16 8 C -0.27 -6.94 7.17 -38.84 -0.28 -7.22 16 9 C 0.13 3.37 5.10 -106.85 -0.55 2.83 16 10 C -0.45 -12.80 9.57 -37.74 -0.36 -13.16 16 11 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 12 C 0.09 2.35 5.40 -17.34 -0.09 2.26 16 13 N -0.82 -22.61 13.93 55.55 0.77 -21.83 16 14 Si 0.91 21.95 24.52 -169.99 -4.17 17.78 16 15 H -0.27 -6.34 6.71 56.52 0.38 -5.96 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.24 -6.05 6.86 56.52 0.39 -5.66 16 18 C -0.28 -6.82 9.63 -38.67 -0.37 -7.19 16 19 C -0.14 -1.33 4.92 -26.59 -0.13 -1.46 16 20 C -0.12 -0.96 5.72 -26.55 -0.15 -1.11 16 21 C -0.16 -1.25 6.14 -26.59 -0.16 -1.42 16 22 C 0.06 0.54 6.52 37.21 0.24 0.78 16 23 O -0.36 -4.74 9.98 -35.23 -0.35 -5.09 16 24 H 0.07 0.81 6.86 -51.93 -0.36 0.45 16 25 H 0.06 0.55 4.97 -51.93 -0.26 0.29 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 28 H 0.06 0.89 7.94 -51.93 -0.41 0.47 16 29 H 0.39 6.66 7.20 -40.82 -0.29 6.36 16 30 H 0.09 1.74 6.70 -52.49 -0.35 1.39 16 31 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 32 H 0.10 2.43 4.72 -52.49 -0.25 2.19 16 33 H 0.28 7.11 8.30 -40.82 -0.34 6.77 16 34 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.49 6.62 -51.93 -0.34 0.15 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.46 6.34 -51.93 -0.33 0.13 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -29.61 321.91 -8.58 -38.19 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.40 Total: 7.44 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -2.97 Total: -27.72 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.46 Total: -35.46 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.35 Total: -5.09 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.17 Total: 17.78 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.61 -8.58 -38.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659811993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.377 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds