Wall clock time and date at job start Mon Mar 30 2020 01:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.48162 * 2 1 4 4 N 1.46500 * 109.46998 * 59.99978 * 3 2 1 5 5 C 1.39683 * 119.99915 * 179.97438 * 4 3 2 6 6 C 1.39338 * 119.95489 * 0.02562 * 5 4 3 7 7 C 1.38478 * 120.42470 * 179.97438 * 6 5 4 8 8 C 1.37681 * 120.32885 * 359.97438 * 7 6 5 9 9 C 1.40747 * 119.89056 * 0.02562 * 8 7 6 10 10 C 1.41415 * 120.20659 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99989 * 150.21546 * 10 9 8 12 12 C 1.39931 * 119.99640 * 330.20646 * 10 9 8 13 13 N 1.30836 * 119.99337 * 161.72442 * 12 10 9 14 14 Si 1.86792 * 120.00335 * 341.72614 * 12 10 9 15 15 H 1.48508 * 109.47083 * 95.41030 * 14 12 10 16 16 H 1.48496 * 109.47324 * 215.41050 * 14 12 10 17 17 H 1.48498 * 109.47338 * 335.41271 * 14 12 10 18 18 C 1.38280 * 119.95079 * 179.72673 * 5 4 3 19 19 C 1.53095 * 109.48085 * 239.96666 * 2 1 3 20 20 C 1.53174 * 109.16317 * 297.62762 * 19 2 1 21 21 C 1.53181 * 109.03575 * 303.01713 * 20 19 2 22 22 C 1.53095 * 109.16336 * 56.98015 * 21 20 19 23 23 O 1.42901 * 109.41275 * 302.39338 * 22 21 20 24 24 H 1.09003 * 109.46927 * 299.97486 * 1 2 3 25 25 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47335 * 59.97745 * 1 2 3 27 27 H 1.09006 * 109.47532 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47485 * 300.00233 * 3 2 1 29 29 H 0.97001 * 120.00133 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.78549 * 359.95353 * 6 5 4 31 31 H 1.08004 * 119.83538 * 179.97438 * 7 6 5 32 32 H 1.08000 * 120.05583 * 180.02562 * 8 7 6 33 33 H 0.96999 * 119.99232 * 180.02562 * 13 12 10 34 34 H 1.07998 * 120.16408 * 0.02562 * 18 5 4 35 35 H 1.09003 * 109.51926 * 57.52820 * 19 2 1 36 36 H 1.08998 * 109.52327 * 177.72046 * 19 2 1 37 37 H 1.08999 * 109.54611 * 183.15463 * 20 19 2 38 38 H 1.09001 * 109.54830 * 62.88360 * 20 19 2 39 39 H 1.08998 * 109.52236 * 297.07875 * 21 20 19 40 40 H 1.09001 * 109.52079 * 176.88634 * 21 20 19 41 41 H 1.08998 * 109.48295 * 182.40827 * 22 21 20 42 42 H 1.09004 * 109.48799 * 62.38006 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 1.5520 2.1330 1.1962 5 6 1.8901 3.4701 1.4175 6 6 2.6914 4.1463 0.4997 7 6 3.0321 5.4720 0.7092 8 6 2.5819 6.1372 1.8274 9 6 1.7718 5.4674 2.7633 10 6 1.3053 6.1443 3.9140 11 1 0.3631 5.8634 4.3609 12 6 2.0646 7.1780 4.4735 13 7 1.5045 8.0323 5.2910 14 14 3.8776 7.3381 4.0533 15 1 4.0441 8.3078 2.9409 16 1 4.6213 7.8195 5.2451 17 1 4.4087 6.0145 3.6397 18 6 1.4241 4.1227 2.5440 19 6 2.0405 -0.7224 -1.2495 20 6 1.5757 -2.1814 -1.2120 21 6 2.0765 -2.8322 0.0811 22 6 1.5646 -2.0283 1.2792 23 8 2.0066 -0.6741 1.1664 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5142 -0.8898 27 1 3.1303 1.4423 0.0005 28 1 1.6770 1.9563 -0.8899 29 1 0.9946 1.6616 1.8349 30 1 3.0493 3.6329 -0.3805 31 1 3.6541 5.9868 -0.0082 32 1 2.8500 7.1713 1.9862 33 1 2.0308 8.7490 5.6786 34 1 0.7993 3.6011 3.2539 35 1 1.6420 -0.2359 -2.1398 36 1 3.1298 -0.6875 -1.2709 37 1 1.9825 -2.7159 -2.0704 38 1 0.4867 -2.2181 -1.2406 39 1 3.1664 -2.8399 0.0866 40 1 1.7036 -3.8547 0.1423 41 1 1.9531 -2.4620 2.2007 42 1 0.4750 -2.0549 1.2962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659811993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:42 Heat of formation + Delta-G solvation = -56.550827 kcal Electronic energy + Delta-G solvation = -21257.704316 eV Core-core repulsion = 18200.778319 eV Total energy + Delta-G solvation = -3056.925996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.08377 -39.68973 -36.81436 -35.20801 -34.63303 -33.37262 -32.02912 -30.00253 -29.04047 -27.07734 -26.69528 -24.90785 -23.05544 -22.77361 -21.69709 -20.10476 -19.29773 -17.80020 -17.49844 -17.20177 -16.42495 -16.30302 -16.26535 -15.66278 -15.43345 -15.02955 -14.78151 -14.38076 -14.33064 -13.96679 -13.78871 -13.61482 -13.53307 -13.14561 -13.12105 -12.75501 -12.60445 -12.50062 -12.25222 -12.10042 -11.90925 -11.60657 -11.58467 -11.35450 -11.09869 -10.96422 -10.54638 -10.30645 -9.46120 -8.86499 -8.04397 -6.48658 0.87554 1.12063 1.30197 1.44996 1.54195 2.18491 2.65459 2.68522 2.84519 3.63337 3.67827 3.85926 3.90352 3.96296 4.10346 4.26457 4.38248 4.48777 4.54021 4.60045 4.63773 4.67820 4.75301 4.76387 4.86028 4.92530 4.98529 5.01596 5.05817 5.11292 5.12701 5.18143 5.21614 5.25862 5.47251 5.56577 5.78721 5.88617 6.01141 6.11902 6.35615 6.40351 6.72594 6.84531 6.91833 7.10560 8.22721 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.003729 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.851733 B = 7507.262094 C = 7727.679978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 C 0.145 3.855 4 N -0.743 5.743 5 C 0.244 3.756 6 C -0.291 4.291 7 C -0.046 4.046 8 C -0.295 4.295 9 C 0.108 3.892 10 C -0.491 4.491 11 H 0.051 0.949 12 C 0.049 3.951 13 N -0.855 5.855 14 Si 0.972 3.028 15 H -0.257 1.257 16 H -0.279 1.279 17 H -0.257 1.257 18 C -0.299 4.299 19 C -0.139 4.139 20 C -0.120 4.120 21 C -0.152 4.152 22 C 0.049 3.951 23 O -0.394 6.394 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.396 0.604 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.292 0.708 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -20.176 -13.941 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.069 3.931 3 C 0.021 3.979 4 N -0.374 5.374 5 C 0.141 3.859 6 C -0.314 4.314 7 C -0.065 4.065 8 C -0.316 4.316 9 C 0.105 3.895 10 C -0.521 4.521 11 H 0.069 0.931 12 C -0.165 4.165 13 N -0.482 5.482 14 Si 0.796 3.204 15 H -0.183 1.183 16 H -0.206 1.206 17 H -0.181 1.181 18 C -0.324 4.324 19 C -0.177 4.177 20 C -0.157 4.157 21 C -0.190 4.190 22 C -0.027 4.027 23 O -0.314 6.314 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.231 0.769 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.958 -19.951 -13.802 24.339 hybrid contribution -0.080 0.250 0.704 0.751 sum 1.879 -19.702 -13.098 23.733 Atomic orbital electron populations 1.22404 0.94708 1.03201 1.02959 1.21698 0.93931 0.90760 0.86714 1.21332 0.98441 0.89811 0.88338 1.44488 1.58184 1.08462 1.26284 1.17648 0.91684 0.84238 0.92335 1.20334 1.11820 0.96027 1.03236 1.20762 0.96142 0.94166 0.95438 1.20956 1.11956 0.99395 0.99250 1.17584 0.89260 0.91108 0.91518 1.19456 1.06658 1.14739 1.11228 0.93097 1.26807 1.04870 0.91996 0.92811 1.69740 1.39979 1.12019 1.26445 0.85403 0.77227 0.80324 0.77490 1.18267 1.20615 1.18108 1.20486 1.15064 0.95254 1.01549 1.22101 1.01710 0.96818 0.97055 1.21623 1.01567 0.94451 0.98074 1.22166 1.01565 1.00216 0.95060 1.22768 0.99287 0.81442 0.99245 1.88024 1.74001 1.25822 1.43589 0.93150 0.90338 0.90505 0.93024 0.90460 0.76924 0.85736 0.85483 0.88965 0.89726 0.89238 0.89324 0.91367 0.90090 0.90806 0.91831 0.89242 0.88769 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 7.76 71.98 0.56 -2.72 16 2 C 0.11 2.25 0.76 -10.76 -0.01 2.24 16 3 C 0.15 3.81 4.05 86.38 0.35 4.16 16 4 N -0.74 -25.15 5.32 -339.57 -1.81 -26.95 16 5 C 0.24 10.36 6.64 38.16 0.25 10.62 16 6 C -0.29 -11.76 9.32 22.59 0.21 -11.55 16 7 C -0.05 -1.99 10.01 22.20 0.22 -1.77 16 8 C -0.30 -14.83 7.17 22.75 0.16 -14.67 16 9 C 0.11 5.94 5.10 -21.31 -0.11 5.84 16 10 C -0.49 -29.43 9.57 23.46 0.22 -29.21 16 11 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 12 C 0.05 2.78 5.40 85.25 0.46 3.24 16 13 N -0.85 -49.26 13.93 21.82 0.30 -48.96 16 14 Si 0.97 45.76 24.52 68.60 1.68 47.44 16 15 H -0.26 -11.39 6.71 99.48 0.67 -10.72 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.26 -12.52 6.86 99.48 0.68 -11.84 16 18 C -0.30 -14.97 9.63 22.86 0.22 -14.75 16 19 C -0.14 -2.16 4.92 30.68 0.15 -2.01 16 20 C -0.12 -1.45 5.72 30.71 0.18 -1.28 16 21 C -0.15 -2.01 6.14 30.69 0.19 -1.82 16 22 C 0.05 0.84 6.52 72.01 0.47 1.31 16 23 O -0.39 -9.60 9.98 -148.98 -1.49 -11.09 16 24 H 0.05 1.12 6.86 -2.39 -0.02 1.10 16 25 H 0.08 1.18 4.97 -2.39 -0.01 1.17 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.44 7.94 -2.38 -0.02 1.42 16 28 H 0.08 1.86 7.94 -2.39 -0.02 1.84 16 29 H 0.40 13.14 7.20 -92.71 -0.67 12.47 16 30 H 0.12 4.19 6.70 -2.91 -0.02 4.17 16 31 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 32 H 0.09 4.63 4.72 -2.91 -0.01 4.62 16 33 H 0.29 15.10 8.30 -92.71 -0.77 14.33 16 34 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.80 6.62 -2.39 -0.02 0.78 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 0.92 6.34 -2.38 -0.02 0.90 16 Total: -1.00 -66.02 321.91 2.50 -63.52 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.28 Total: 28.40 kcal Atomic # 6 Polarization: -55.89 SS G_CDS: 3.53 Total: -52.36 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.50 Total: -75.91 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.49 Total: -11.09 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.68 Total: 47.44 kcal Total: -66.02 2.50 -63.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659811993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.966 kcal (2) G-P(sol) polarization free energy of solvation -66.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds