Wall clock time and date at job start Mon Mar 30 2020 01:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 C 1.52995 * 109.47356 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47121 * 179.97438 * 4 3 2 6 6 C 1.34769 * 119.99929 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00156 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47348 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47385 * 53.81101 * 9 8 6 11 11 C 1.50707 * 109.46800 * 293.80633 * 9 8 6 12 12 H 1.07996 * 119.99939 * 324.79144 * 11 9 8 13 13 C 1.37876 * 119.99516 * 144.79724 * 11 9 8 14 14 N 1.31517 * 119.99498 * 181.40280 * 13 11 9 15 15 Si 1.86799 * 120.00347 * 1.40222 * 13 11 9 16 16 H 1.48496 * 109.47059 * 267.09616 * 15 13 11 17 17 H 1.48498 * 109.46945 * 27.10055 * 15 13 11 18 18 H 1.48502 * 109.46861 * 147.09689 * 15 13 11 19 19 C 1.50699 * 109.46966 * 173.80920 * 9 8 6 20 20 C 1.38237 * 120.00135 * 66.64777 * 19 9 8 21 21 C 1.38237 * 120.00124 * 179.80917 * 20 19 9 22 22 C 1.38241 * 119.99834 * 0.39586 * 21 20 19 23 23 C 1.38239 * 119.99727 * 359.85702 * 22 21 20 24 24 C 1.38229 * 120.00171 * 359.95425 * 23 22 21 25 25 H 1.08996 * 109.47167 * 59.99957 * 1 2 3 26 26 H 1.09005 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46786 * 299.99680 * 1 2 3 28 28 H 1.09004 * 109.46991 * 239.99882 * 2 1 3 29 29 H 1.09002 * 109.47337 * 120.00418 * 2 1 3 30 30 H 1.09004 * 109.46707 * 59.99678 * 3 2 1 31 31 H 1.09003 * 109.46778 * 300.00789 * 3 2 1 32 32 H 1.08999 * 109.47126 * 60.00134 * 4 3 2 33 33 H 1.09003 * 109.46688 * 299.99513 * 4 3 2 34 34 H 0.97005 * 119.99423 * 0.02562 * 5 4 3 35 35 H 1.09004 * 109.46561 * 60.00018 * 8 6 5 36 36 H 1.09003 * 109.46933 * 300.01124 * 8 6 5 37 37 H 0.96996 * 119.99967 * 179.97438 * 14 13 11 38 38 H 1.07999 * 120.00352 * 359.97438 * 20 19 9 39 39 H 1.07995 * 120.00255 * 180.23001 * 21 20 19 40 40 H 1.07995 * 119.99860 * 179.82910 * 22 21 20 41 41 H 1.08003 * 119.99758 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99873 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 5.3833 3.0700 -0.0014 7 8 6.1715 2.1481 -0.0014 8 6 5.8858 4.4908 -0.0026 9 6 7.4157 4.4908 -0.0031 10 1 7.7788 3.8834 -0.8321 11 6 7.9184 3.9182 1.2971 12 1 7.3782 4.1039 2.2137 13 6 9.0681 3.1574 1.3165 14 7 9.4917 2.6347 2.4466 15 14 10.0240 2.8689 -0.2622 16 1 9.5681 1.6041 -0.8928 17 1 9.7906 3.9998 -1.1958 18 1 11.4733 2.7734 0.0471 19 6 7.9180 5.9032 -0.1575 20 6 7.7013 6.8276 0.8472 21 6 8.1655 8.1222 0.7072 22 6 8.8392 8.4945 -0.4410 23 6 9.0512 7.5715 -1.4480 24 6 8.5905 6.2759 -1.3063 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9288 -0.8909 33 1 3.9336 0.9286 0.8892 34 1 3.4279 3.5610 -0.0008 35 1 5.5223 5.0054 0.8870 36 1 5.5223 5.0039 -0.8930 37 1 10.3002 2.0991 2.4602 38 1 7.1717 6.5378 1.7427 39 1 7.9995 8.8434 1.4937 40 1 9.1994 9.5066 -0.5516 41 1 9.5772 7.8625 -2.3453 42 1 8.7565 5.5547 -2.0929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353359284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:09 Heat of formation + Delta-G solvation = -36.573413 kcal Electronic energy + Delta-G solvation = -20911.398006 eV Core-core repulsion = 17855.338295 eV Total energy + Delta-G solvation = -3056.059711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.19258 -38.35710 -36.05290 -34.09137 -33.31164 -31.63103 -30.19437 -29.55105 -28.34935 -25.85623 -23.42703 -22.39137 -21.81496 -21.32905 -20.08448 -19.06351 -16.90659 -16.48773 -15.89313 -15.84301 -15.39603 -14.59034 -14.50298 -14.12419 -13.79951 -13.73930 -13.30192 -13.05119 -12.72263 -12.51680 -12.44930 -12.24824 -11.95547 -11.83602 -11.43301 -11.26264 -11.17247 -11.00270 -10.72839 -10.71884 -10.50779 -10.32229 -9.84715 -9.58251 -9.12758 -8.89751 -8.54660 -8.38552 -8.18347 -7.79349 -5.94720 -3.92031 2.11431 2.16375 3.46124 3.50549 3.52875 3.53655 3.71754 4.54381 4.61555 4.78298 4.80847 4.93378 5.27808 5.32448 5.43003 5.53388 5.54854 5.57729 5.63450 5.69872 5.72230 5.81248 5.87371 5.96885 6.03485 6.04664 6.11562 6.18255 6.24628 6.26828 6.35189 6.65010 6.71439 6.85824 6.94543 7.05126 7.15949 7.29297 7.60426 7.75479 7.85682 8.09604 8.56414 9.03275 9.07195 9.70311 11.18396 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.004685 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.642752 B = 5974.886983 C = 6943.736723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.120 3.880 5 N -0.750 5.750 6 C 0.512 3.488 7 O -0.502 6.502 8 C -0.117 4.117 9 C 0.056 3.944 10 H 0.050 0.950 11 C -0.488 4.488 12 H 0.070 0.930 13 C 0.085 3.915 14 N -0.900 5.900 15 Si 0.870 3.130 16 H -0.277 1.277 17 H -0.255 1.255 18 H -0.295 1.295 19 C -0.039 4.039 20 C -0.100 4.100 21 C -0.128 4.128 22 C -0.149 4.149 23 C -0.128 4.128 24 C -0.135 4.135 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.392 0.608 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.261 0.739 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.925 3.788 -6.796 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.004 4.004 5 N -0.405 5.405 6 C 0.299 3.701 7 O -0.374 6.374 8 C -0.157 4.157 9 C 0.037 3.963 10 H 0.068 0.932 11 C -0.525 4.525 12 H 0.088 0.912 13 C -0.117 4.117 14 N -0.538 5.538 15 Si 0.698 3.302 16 H -0.202 1.202 17 H -0.180 1.180 18 H -0.222 1.222 19 C -0.040 4.040 20 C -0.118 4.118 21 C -0.147 4.147 22 C -0.168 4.168 23 C -0.146 4.146 24 C -0.153 4.153 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.225 0.775 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.157 2.964 -6.704 15.061 hybrid contribution 0.415 0.096 -0.625 0.757 sum -12.742 3.060 -7.329 15.015 Atomic orbital electron populations 1.21763 0.95788 1.01565 1.01743 1.21447 0.95774 0.96336 1.02561 1.21813 0.94895 0.97616 1.02427 1.21225 0.92820 0.84261 1.02088 1.46151 1.07691 1.07731 1.78930 1.20828 0.81113 0.92543 0.75650 1.90742 1.54636 1.46211 1.45824 1.21661 0.99695 0.92491 1.01852 1.18130 0.89601 0.88786 0.99817 0.93232 1.20595 1.09522 1.30445 0.91911 0.91168 1.24881 0.96894 0.94265 0.95633 1.69889 1.23594 1.34311 1.25982 0.86954 0.78505 0.79580 0.85160 1.20244 1.17958 1.22164 1.20773 0.94812 0.96755 0.91669 1.20985 0.99961 0.92212 0.98686 1.21058 0.99597 0.96621 0.97376 1.20861 1.02057 0.98797 0.95050 1.20963 1.00933 0.93987 0.98699 1.21152 1.00414 0.95621 0.98149 0.92817 0.92779 0.92739 0.91756 0.91607 0.91444 0.91604 0.92192 0.91837 0.77462 0.89812 0.91427 0.92917 0.86188 0.87203 0.87460 0.87418 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.15 0.37 -0.77 16 2 C -0.12 -1.10 5.93 -26.73 -0.16 -1.26 16 3 C -0.13 -1.26 5.33 -26.73 -0.14 -1.40 16 4 C 0.12 1.65 5.67 -4.04 -0.02 1.62 16 5 N -0.75 -11.17 5.56 -60.29 -0.33 -11.50 16 6 C 0.51 10.21 7.58 -10.99 -0.08 10.13 16 7 O -0.50 -12.67 15.02 5.55 0.08 -12.58 16 8 C -0.12 -2.19 4.96 -27.88 -0.14 -2.33 16 9 C 0.06 1.29 1.17 -92.92 -0.11 1.18 16 10 H 0.05 1.22 4.94 -51.93 -0.26 0.96 16 11 C -0.49 -13.52 6.88 -34.44 -0.24 -13.76 16 12 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 13 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 14 N -0.90 -28.46 13.96 55.43 0.77 -27.69 16 15 Si 0.87 22.89 27.00 -169.99 -4.59 18.30 16 16 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 17 H -0.26 -6.18 4.72 56.52 0.27 -5.91 16 18 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 19 C -0.04 -0.83 4.65 -104.62 -0.49 -1.32 16 20 C -0.10 -1.97 8.93 -39.58 -0.35 -2.32 16 21 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 22 C -0.15 -2.45 10.05 -39.58 -0.40 -2.84 16 23 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 24 C -0.14 -2.66 8.70 -39.59 -0.34 -3.01 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.39 4.47 8.47 -40.82 -0.35 4.13 16 35 H 0.08 1.47 8.05 -51.93 -0.42 1.05 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16 38 H 0.12 2.34 7.87 -52.49 -0.41 1.92 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 42 H 0.11 2.15 7.12 -52.48 -0.37 1.77 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -34.00 344.22 -8.87 -42.87 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.00 Total: 4.23 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -3.00 Total: -18.82 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.44 Total: -39.19 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.59 Total: 18.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.00 -8.87 -42.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353359284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.300 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds