Wall clock time and date at job start Mon Mar 30 2020 01:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 C 1.52995 * 109.47356 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47121 * 179.97438 * 4 3 2 6 6 C 1.34769 * 119.99929 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00156 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47348 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47385 * 53.81101 * 9 8 6 11 11 C 1.50707 * 109.46800 * 293.80633 * 9 8 6 12 12 H 1.07996 * 119.99939 * 324.79144 * 11 9 8 13 13 C 1.37876 * 119.99516 * 144.79724 * 11 9 8 14 14 N 1.31517 * 119.99498 * 181.40280 * 13 11 9 15 15 Si 1.86799 * 120.00347 * 1.40222 * 13 11 9 16 16 H 1.48496 * 109.47059 * 267.09616 * 15 13 11 17 17 H 1.48498 * 109.46945 * 27.10055 * 15 13 11 18 18 H 1.48502 * 109.46861 * 147.09689 * 15 13 11 19 19 C 1.50699 * 109.46966 * 173.80920 * 9 8 6 20 20 C 1.38237 * 120.00135 * 66.64777 * 19 9 8 21 21 C 1.38237 * 120.00124 * 179.80917 * 20 19 9 22 22 C 1.38241 * 119.99834 * 0.39586 * 21 20 19 23 23 C 1.38239 * 119.99727 * 359.85702 * 22 21 20 24 24 C 1.38229 * 120.00171 * 359.95425 * 23 22 21 25 25 H 1.08996 * 109.47167 * 59.99957 * 1 2 3 26 26 H 1.09005 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46786 * 299.99680 * 1 2 3 28 28 H 1.09004 * 109.46991 * 239.99882 * 2 1 3 29 29 H 1.09002 * 109.47337 * 120.00418 * 2 1 3 30 30 H 1.09004 * 109.46707 * 59.99678 * 3 2 1 31 31 H 1.09003 * 109.46778 * 300.00789 * 3 2 1 32 32 H 1.08999 * 109.47126 * 60.00134 * 4 3 2 33 33 H 1.09003 * 109.46688 * 299.99513 * 4 3 2 34 34 H 0.97005 * 119.99423 * 0.02562 * 5 4 3 35 35 H 1.09004 * 109.46561 * 60.00018 * 8 6 5 36 36 H 1.09003 * 109.46933 * 300.01124 * 8 6 5 37 37 H 0.96996 * 119.99967 * 179.97438 * 14 13 11 38 38 H 1.07999 * 120.00352 * 359.97438 * 20 19 9 39 39 H 1.07995 * 120.00255 * 180.23001 * 21 20 19 40 40 H 1.07995 * 119.99860 * 179.82910 * 22 21 20 41 41 H 1.08003 * 119.99758 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99873 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 5.3833 3.0700 -0.0014 7 8 6.1715 2.1481 -0.0014 8 6 5.8858 4.4908 -0.0026 9 6 7.4157 4.4908 -0.0031 10 1 7.7788 3.8834 -0.8321 11 6 7.9184 3.9182 1.2971 12 1 7.3782 4.1039 2.2137 13 6 9.0681 3.1574 1.3165 14 7 9.4917 2.6347 2.4466 15 14 10.0240 2.8689 -0.2622 16 1 9.5681 1.6041 -0.8928 17 1 9.7906 3.9998 -1.1958 18 1 11.4733 2.7734 0.0471 19 6 7.9180 5.9032 -0.1575 20 6 7.7013 6.8276 0.8472 21 6 8.1655 8.1222 0.7072 22 6 8.8392 8.4945 -0.4410 23 6 9.0512 7.5715 -1.4480 24 6 8.5905 6.2759 -1.3063 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9288 -0.8909 33 1 3.9336 0.9286 0.8892 34 1 3.4279 3.5610 -0.0008 35 1 5.5223 5.0054 0.8870 36 1 5.5223 5.0039 -0.8930 37 1 10.3002 2.0991 2.4602 38 1 7.1717 6.5378 1.7427 39 1 7.9995 8.8434 1.4937 40 1 9.1994 9.5066 -0.5516 41 1 9.5772 7.8625 -2.3453 42 1 8.7565 5.5547 -2.0929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353359284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:08 Heat of formation + Delta-G solvation = -58.358781 kcal Electronic energy + Delta-G solvation = -20912.342691 eV Core-core repulsion = 17855.338295 eV Total energy + Delta-G solvation = -3057.004395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75638 -39.80540 -37.15093 -35.81174 -34.53717 -33.69608 -31.59298 -30.84688 -29.57758 -27.65153 -24.76512 -23.76767 -23.23245 -22.24340 -21.54116 -20.65874 -19.00497 -18.00588 -17.23755 -16.85268 -16.84651 -16.36478 -15.92693 -15.58157 -15.35102 -14.84962 -14.57611 -14.40480 -14.35435 -14.10473 -13.86052 -13.52663 -13.33463 -13.20217 -12.91605 -12.66541 -12.40036 -12.15140 -12.00385 -11.95839 -11.87082 -11.77640 -11.50082 -11.48178 -11.04212 -10.71525 -10.49753 -9.93883 -9.59960 -9.28620 -8.21754 -6.18624 0.69797 0.74631 1.31901 1.37130 1.42389 1.93942 2.40619 2.42277 3.09818 3.24986 3.91446 4.02526 4.07081 4.15424 4.23460 4.31670 4.33734 4.43760 4.48090 4.50841 4.65067 4.65791 4.72727 4.86951 4.88384 4.93155 4.96284 5.05228 5.14867 5.21438 5.26765 5.36600 5.39681 5.42495 5.46432 5.63934 5.70369 5.78429 5.84451 6.04376 6.34355 6.37824 6.78441 6.80992 7.45840 7.57046 8.95444 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.004685 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.642752 B = 5974.886983 C = 6943.736723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.116 4.116 4 C 0.118 3.882 5 N -0.728 5.728 6 C 0.506 3.494 7 O -0.566 6.566 8 C -0.112 4.112 9 C 0.056 3.944 10 H 0.032 0.968 11 C -0.465 4.465 12 H 0.034 0.966 13 C 0.022 3.978 14 N -0.955 5.955 15 Si 0.920 3.080 16 H -0.292 1.292 17 H -0.222 1.222 18 H -0.296 1.296 19 C -0.063 4.063 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.140 4.140 23 C -0.125 4.125 24 C -0.151 4.151 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.414 0.586 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.257 0.743 38 H 0.108 0.892 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.316 6.790 -8.860 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.006 4.006 5 N -0.382 5.382 6 C 0.294 3.706 7 O -0.444 6.444 8 C -0.152 4.152 9 C 0.037 3.963 10 H 0.050 0.950 11 C -0.502 4.502 12 H 0.052 0.948 13 C -0.174 4.174 14 N -0.597 5.597 15 Si 0.746 3.254 16 H -0.219 1.219 17 H -0.145 1.145 18 H -0.223 1.223 19 C -0.064 4.064 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.158 4.158 23 C -0.143 4.143 24 C -0.170 4.170 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.250 0.750 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.156 0.844 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.625 6.024 -8.794 18.097 hybrid contribution 0.715 -0.723 0.031 1.018 sum -13.910 5.301 -8.763 17.274 Atomic orbital electron populations 1.21732 0.94236 1.02186 1.02344 1.21465 0.97065 0.95638 1.02154 1.21742 0.91277 0.98570 1.03781 1.21328 0.95755 0.83084 1.00438 1.45932 1.06493 1.09201 1.76614 1.21132 0.82248 0.92387 0.74848 1.90723 1.56580 1.47861 1.49194 1.21595 0.97008 0.92349 1.04237 1.18013 0.92242 0.89885 0.96158 0.94980 1.20832 1.07870 1.28755 0.92792 0.94804 1.25631 0.98597 0.95061 0.98134 1.70034 1.24662 1.36873 1.28140 0.86162 0.76901 0.79738 0.82576 1.21883 1.14485 1.22329 1.20483 0.96744 0.95702 0.93445 1.21015 1.01042 0.93510 0.98091 1.21397 0.98541 0.95858 0.98598 1.21338 1.00181 1.00394 0.93846 1.21338 0.99993 0.92829 1.00103 1.21261 1.00814 0.97151 0.97734 0.91970 0.92242 0.92346 0.91902 0.92480 0.90453 0.89737 0.93182 0.94359 0.74956 0.88629 0.87532 0.93386 0.87346 0.84364 0.83593 0.84200 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.13 -2.09 5.93 30.59 0.18 -1.91 16 3 C -0.12 -2.05 5.33 30.59 0.16 -1.89 16 4 C 0.12 3.24 5.67 86.38 0.49 3.73 16 5 N -0.73 -21.12 5.56 -463.06 -2.57 -23.69 16 6 C 0.51 20.38 7.58 87.66 0.66 21.04 16 7 O -0.57 -29.77 15.02 -3.04 -0.05 -29.81 16 8 C -0.11 -4.13 4.96 29.85 0.15 -3.98 16 9 C 0.06 2.61 1.17 -12.29 -0.01 2.59 16 10 H 0.03 1.59 4.94 -2.39 -0.01 1.58 16 11 C -0.46 -26.77 6.88 25.60 0.18 -26.59 16 12 H 0.03 2.14 8.06 -2.91 -0.02 2.11 16 13 C 0.02 1.34 5.47 84.65 0.46 1.80 16 14 N -0.96 -63.65 13.96 21.45 0.30 -63.35 16 15 Si 0.92 48.73 27.00 68.60 1.85 50.58 16 16 H -0.29 -16.05 7.11 99.48 0.71 -15.34 16 17 H -0.22 -10.42 4.72 99.48 0.47 -9.95 16 18 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 19 C -0.06 -2.59 4.65 -19.87 -0.09 -2.68 16 20 C -0.12 -4.48 8.93 22.27 0.20 -4.28 16 21 C -0.13 -3.88 10.05 22.27 0.22 -3.65 16 22 C -0.14 -3.88 10.05 22.27 0.22 -3.65 16 23 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 24 C -0.15 -5.58 8.70 22.27 0.19 -5.38 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.71 8.14 -2.38 -0.02 0.70 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.41 8.48 8.47 -92.70 -0.79 7.70 16 35 H 0.10 3.29 8.05 -2.38 -0.02 3.27 16 36 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 38 H 0.11 4.24 7.87 -2.91 -0.02 4.22 16 39 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 40 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 41 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 42 H 0.11 3.99 7.12 -2.91 -0.02 3.97 16 Total: -1.00 -79.02 344.22 3.46 -75.57 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.04 Total: 20.27 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 3.96 Total: -29.57 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.27 Total: -87.04 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.05 Total: -29.81 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.85 Total: 50.58 kcal Total: -79.02 3.46 -75.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353359284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.209 kcal (2) G-P(sol) polarization free energy of solvation -79.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds