Wall clock time and date at job start Mon Mar 30 2020 02:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47271 * 2 1 4 4 H 1.08994 * 109.47090 * 175.17119 * 3 2 1 5 5 C 1.50702 * 109.47195 * 295.17498 * 3 2 1 6 6 H 1.07993 * 119.99938 * 114.96978 * 5 3 2 7 7 C 1.37881 * 119.99586 * 294.96666 * 5 3 2 8 8 N 1.31514 * 120.00243 * 349.56350 * 7 5 3 9 9 Si 1.86803 * 119.99669 * 169.55728 * 7 5 3 10 10 H 1.48498 * 109.47074 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46865 * 60.00313 * 9 7 5 12 12 H 1.48502 * 109.47417 * 300.00301 * 9 7 5 13 13 N 1.46898 * 109.46984 * 55.17204 * 3 2 1 14 14 C 1.46893 * 111.00017 * 147.77183 * 13 3 2 15 15 H 1.09000 * 109.43764 * 173.73617 * 14 13 3 16 16 C 1.53070 * 109.43448 * 53.83122 * 14 13 3 17 17 C 1.53392 * 108.31615 * 191.70174 * 16 14 13 18 18 O 1.42821 * 108.33854 * 64.76177 * 17 16 14 19 19 C 1.35845 * 117.86208 * 310.79019 * 18 17 16 20 20 C 1.39143 * 118.49978 * 196.97498 * 19 18 17 21 21 C 1.37968 * 120.21691 * 180.39364 * 20 19 18 22 22 C 1.38280 * 119.95645 * 0.02562 * 21 20 19 23 23 C 1.38103 * 119.98652 * 359.93356 * 22 21 20 24 24 C 1.50701 * 119.84414 * 180.02562 * 23 22 21 25 25 C 1.38370 * 121.80185 * 17.25244 * 19 18 17 26 26 H 1.09000 * 109.47073 * 185.01836 * 1 2 3 27 27 H 1.08998 * 109.47093 * 305.02154 * 1 2 3 28 28 H 1.09005 * 109.47097 * 65.02004 * 1 2 3 29 29 H 1.09001 * 109.46729 * 240.00221 * 2 1 3 30 30 H 1.08997 * 109.46856 * 120.00459 * 2 1 3 31 31 H 0.96999 * 119.99923 * 0.16739 * 8 7 5 32 32 H 1.00895 * 111.00323 * 271.73182 * 13 3 2 33 33 H 1.09001 * 109.69779 * 311.44258 * 16 14 13 34 34 H 1.08994 * 109.70368 * 72.03677 * 16 14 13 35 35 H 1.09005 * 109.71022 * 305.05433 * 17 16 14 36 36 H 1.08993 * 109.72270 * 184.48812 * 17 16 14 37 37 H 1.08004 * 119.89110 * 0.39045 * 20 19 18 38 38 H 1.08004 * 120.02063 * 180.02562 * 21 20 19 39 39 H 1.08009 * 120.00940 * 179.97438 * 22 21 20 40 40 H 1.08993 * 109.47312 * 272.76498 * 24 23 22 41 41 H 1.09005 * 109.46985 * 32.77028 * 24 23 22 42 42 H 1.08999 * 109.47363 * 152.76195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1266 1.4437 0.0865 5 6 1.6377 2.1176 -1.2859 6 1 0.9470 2.9476 -1.2668 7 6 2.1516 1.6756 -2.4866 8 7 3.1410 0.8093 -2.4994 9 14 1.4422 2.3072 -4.0951 10 1 2.1632 1.6826 -5.2332 11 1 1.5983 3.7826 -4.1594 12 1 0.0008 1.9582 -4.1714 13 7 1.4576 2.1678 1.1369 14 6 2.3876 3.1852 1.6446 15 1 1.8911 3.7804 2.4109 16 6 2.8229 4.0966 0.4944 17 6 4.0018 4.9515 0.9765 18 8 5.1037 4.0847 1.2490 19 6 4.8743 2.9891 2.0187 20 6 5.9639 2.3389 2.5897 21 6 5.7724 1.2181 3.3711 22 6 4.4939 0.7378 3.5879 23 6 3.4100 1.3810 3.0235 24 6 2.0180 0.8552 3.2623 25 6 3.5959 2.5080 2.2400 26 1 -0.3633 -1.0237 0.0899 27 1 -0.3633 0.5898 0.8416 28 1 -0.3633 0.4340 -0.9316 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.5077 0.4794 -1.6642 32 1 0.5715 2.5805 0.8869 33 1 3.1319 3.4909 -0.3575 34 1 1.9951 4.7436 0.2047 35 1 3.7215 5.4855 1.8845 36 1 4.2794 5.6657 0.2013 37 1 6.9630 2.7129 2.4207 38 1 6.6204 0.7161 3.8131 39 1 4.3430 -0.1398 4.1991 40 1 1.7824 0.0980 2.5147 41 1 1.9623 0.4133 4.2572 42 1 1.3025 1.6741 3.1881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:24 Heat of formation + Delta-G solvation = -15.284860 kcal Electronic energy + Delta-G solvation = -23058.667476 eV Core-core repulsion = 20003.530906 eV Total energy + Delta-G solvation = -3055.136570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49624 -37.32058 -36.93157 -33.83800 -31.55351 -31.50984 -30.23116 -29.26373 -26.27286 -25.90008 -24.02957 -23.29707 -23.00797 -20.66382 -20.02127 -18.73402 -17.20206 -17.00146 -16.13670 -15.69037 -14.94284 -14.57146 -14.01863 -13.79985 -13.70256 -13.31289 -13.13214 -12.89122 -12.62024 -12.33131 -12.24790 -12.13736 -11.77126 -11.29763 -11.20285 -11.15186 -10.96585 -10.83819 -10.63516 -10.27253 -10.15829 -10.04593 -9.92516 -9.72049 -9.68690 -8.83590 -8.29914 -8.06733 -7.67829 -7.28806 -6.34860 -4.09060 1.77480 1.88061 3.37688 3.40341 3.58082 3.72831 4.16184 4.48446 5.02029 5.17473 5.22858 5.29347 5.36755 5.39630 5.54284 5.59581 5.70911 5.80983 5.89551 5.99405 6.11293 6.19714 6.28125 6.33175 6.36089 6.42204 6.48598 6.50710 6.71311 6.81565 6.86337 6.98736 7.05157 7.12249 7.19718 7.22462 7.29577 7.41499 7.54083 7.88832 7.91329 8.01156 8.39630 8.57145 8.80646 9.60465 10.97886 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.007833 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.286829 B = 3573.541667 C = 4207.879318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 C 0.202 3.798 4 H 0.028 0.972 5 C -0.617 4.617 6 H 0.047 0.953 7 C 0.028 3.972 8 N -0.902 5.902 9 Si 1.056 2.944 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.288 1.288 13 N -0.668 5.668 14 C 0.139 3.861 15 H 0.070 0.930 16 C -0.196 4.196 17 C 0.064 3.936 18 O -0.319 6.319 19 C 0.140 3.860 20 C -0.170 4.170 21 C -0.088 4.088 22 C -0.171 4.171 23 C -0.018 4.018 24 C -0.101 4.101 25 C -0.143 4.143 26 H 0.021 0.979 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.273 0.727 32 H 0.333 0.667 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 3.698 10.313 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C 0.094 3.906 4 H 0.046 0.954 5 C -0.656 4.656 6 H 0.066 0.934 7 C -0.178 4.178 8 N -0.537 5.537 9 Si 0.885 3.115 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.296 5.296 14 C 0.029 3.971 15 H 0.088 0.912 16 C -0.235 4.235 17 C -0.011 4.011 18 O -0.234 6.234 19 C 0.094 3.906 20 C -0.189 4.189 21 C -0.107 4.107 22 C -0.189 4.189 23 C -0.019 4.019 24 C -0.158 4.158 25 C -0.144 4.144 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.454 3.159 9.029 9.577 hybrid contribution -0.352 0.849 0.761 1.193 sum 0.102 4.008 9.790 10.579 Atomic orbital electron populations 1.21511 0.97272 0.98244 1.01461 1.21566 0.95300 0.98869 0.98809 1.19220 0.94355 0.90145 0.86872 0.95426 1.22428 1.30984 1.18902 0.93259 0.93441 1.25587 0.94617 0.95556 1.02060 1.70782 1.21614 1.29902 1.31362 0.83721 0.75849 0.75668 0.76221 1.20903 1.21740 1.21508 1.61241 1.05016 1.25869 1.37507 1.20107 0.90960 0.91477 0.94601 0.91188 1.23257 0.97944 0.99898 1.02373 1.22952 0.86824 0.91429 0.99930 1.85929 1.37346 1.34116 1.65960 1.18745 0.92991 0.87803 0.91035 1.20414 0.97429 0.98896 1.02127 1.20753 0.96959 0.95294 0.97655 1.20862 0.92411 1.01445 1.04166 1.19698 0.96229 0.92662 0.93273 1.21001 0.92961 1.02563 0.99234 1.19698 0.93232 0.98961 1.02526 0.95940 0.93383 0.92752 0.92468 0.95239 0.91599 0.84959 0.86030 0.90991 0.93018 0.88376 0.86067 0.86224 0.86639 0.89789 0.94614 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.46 37.16 0.35 -2.18 16 2 C -0.11 -2.38 5.19 -26.73 -0.14 -2.51 16 3 C 0.20 4.57 1.11 -68.86 -0.08 4.50 16 4 H 0.03 0.73 5.66 -51.93 -0.29 0.44 16 5 C -0.62 -15.33 5.08 -34.44 -0.17 -15.51 16 6 H 0.05 1.18 7.59 -52.49 -0.40 0.78 16 7 C 0.03 0.76 5.14 -17.82 -0.09 0.66 16 8 N -0.90 -26.02 12.95 55.43 0.72 -25.30 16 9 Si 1.06 24.25 29.92 -169.99 -5.09 19.16 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.67 -12.55 2.18 -102.10 -0.22 -12.77 16 14 C 0.14 2.49 2.35 -68.80 -0.16 2.33 16 15 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.20 -3.61 4.82 -26.49 -0.13 -3.74 16 17 C 0.06 1.05 7.03 37.36 0.26 1.31 16 18 O -0.32 -6.07 10.27 -19.25 -0.20 -6.27 16 19 C 0.14 2.66 6.47 -39.20 -0.25 2.41 16 20 C -0.17 -2.91 9.94 -39.34 -0.39 -3.30 16 21 C -0.09 -1.36 10.04 -39.66 -0.40 -1.76 16 22 C -0.17 -2.74 9.70 -39.62 -0.38 -3.12 16 23 C -0.02 -0.32 5.74 -104.57 -0.60 -0.92 16 24 C -0.10 -1.62 8.34 36.01 0.30 -1.32 16 25 C -0.14 -2.67 4.18 -104.44 -0.44 -3.11 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.87 7.04 -51.93 -0.37 0.51 16 28 H 0.05 1.16 7.54 -51.93 -0.39 0.77 16 29 H 0.06 1.44 6.46 -51.93 -0.34 1.11 16 30 H 0.03 0.62 5.95 -51.93 -0.31 0.31 16 31 H 0.27 7.99 6.23 -40.82 -0.25 7.73 16 32 H 0.33 6.19 7.82 -39.29 -0.31 5.88 16 33 H 0.12 2.82 5.11 -51.93 -0.27 2.55 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.12 1.86 8.06 -52.48 -0.42 1.43 16 38 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.08 1.48 5.20 -51.93 -0.27 1.21 16 41 H 0.03 0.49 8.10 -51.93 -0.42 0.07 16 42 H 0.08 1.34 6.02 -51.93 -0.31 1.02 16 LS Contribution 314.81 15.07 4.74 4.74 Total: -1.00 -27.69 314.81 -8.47 -36.16 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.10 Total: 10.54 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -2.32 Total: -26.26 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.50 Total: -38.08 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.20 Total: -6.27 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -5.09 Total: 19.16 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.69 -8.47 -36.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.874 kcal (2) G-P(sol) polarization free energy of solvation -27.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds