Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47271 * 2 1 4 4 H 1.08994 * 109.47090 * 175.17119 * 3 2 1 5 5 C 1.50702 * 109.47195 * 295.17498 * 3 2 1 6 6 H 1.07993 * 119.99938 * 114.96978 * 5 3 2 7 7 C 1.37881 * 119.99586 * 294.96666 * 5 3 2 8 8 N 1.31514 * 120.00243 * 349.56350 * 7 5 3 9 9 Si 1.86803 * 119.99669 * 169.55728 * 7 5 3 10 10 H 1.48498 * 109.47074 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46865 * 60.00313 * 9 7 5 12 12 H 1.48502 * 109.47417 * 300.00301 * 9 7 5 13 13 N 1.46898 * 109.46984 * 55.17204 * 3 2 1 14 14 C 1.46893 * 111.00017 * 147.77183 * 13 3 2 15 15 H 1.09000 * 109.43764 * 173.73617 * 14 13 3 16 16 C 1.53070 * 109.43448 * 53.83122 * 14 13 3 17 17 C 1.53392 * 108.31615 * 191.70174 * 16 14 13 18 18 O 1.42821 * 108.33854 * 64.76177 * 17 16 14 19 19 C 1.35845 * 117.86208 * 310.79019 * 18 17 16 20 20 C 1.39143 * 118.49978 * 196.97498 * 19 18 17 21 21 C 1.37968 * 120.21691 * 180.39364 * 20 19 18 22 22 C 1.38280 * 119.95645 * 0.02562 * 21 20 19 23 23 C 1.38103 * 119.98652 * 359.93356 * 22 21 20 24 24 C 1.50701 * 119.84414 * 180.02562 * 23 22 21 25 25 C 1.38370 * 121.80185 * 17.25244 * 19 18 17 26 26 H 1.09000 * 109.47073 * 185.01836 * 1 2 3 27 27 H 1.08998 * 109.47093 * 305.02154 * 1 2 3 28 28 H 1.09005 * 109.47097 * 65.02004 * 1 2 3 29 29 H 1.09001 * 109.46729 * 240.00221 * 2 1 3 30 30 H 1.08997 * 109.46856 * 120.00459 * 2 1 3 31 31 H 0.96999 * 119.99923 * 0.16739 * 8 7 5 32 32 H 1.00895 * 111.00323 * 271.73182 * 13 3 2 33 33 H 1.09001 * 109.69779 * 311.44258 * 16 14 13 34 34 H 1.08994 * 109.70368 * 72.03677 * 16 14 13 35 35 H 1.09005 * 109.71022 * 305.05433 * 17 16 14 36 36 H 1.08993 * 109.72270 * 184.48812 * 17 16 14 37 37 H 1.08004 * 119.89110 * 0.39045 * 20 19 18 38 38 H 1.08004 * 120.02063 * 180.02562 * 21 20 19 39 39 H 1.08009 * 120.00940 * 179.97438 * 22 21 20 40 40 H 1.08993 * 109.47312 * 272.76498 * 24 23 22 41 41 H 1.09005 * 109.46985 * 32.77028 * 24 23 22 42 42 H 1.08999 * 109.47363 * 152.76195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1266 1.4437 0.0865 5 6 1.6377 2.1176 -1.2859 6 1 0.9470 2.9476 -1.2668 7 6 2.1516 1.6756 -2.4866 8 7 3.1410 0.8093 -2.4994 9 14 1.4422 2.3072 -4.0951 10 1 2.1632 1.6826 -5.2332 11 1 1.5983 3.7826 -4.1594 12 1 0.0008 1.9582 -4.1714 13 7 1.4576 2.1678 1.1369 14 6 2.3876 3.1852 1.6446 15 1 1.8911 3.7804 2.4109 16 6 2.8229 4.0966 0.4944 17 6 4.0018 4.9515 0.9765 18 8 5.1037 4.0847 1.2490 19 6 4.8743 2.9891 2.0187 20 6 5.9639 2.3389 2.5897 21 6 5.7724 1.2181 3.3711 22 6 4.4939 0.7378 3.5879 23 6 3.4100 1.3810 3.0235 24 6 2.0180 0.8552 3.2623 25 6 3.5959 2.5080 2.2400 26 1 -0.3633 -1.0237 0.0899 27 1 -0.3633 0.5898 0.8416 28 1 -0.3633 0.4340 -0.9316 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.5077 0.4794 -1.6642 32 1 0.5715 2.5805 0.8869 33 1 3.1319 3.4909 -0.3575 34 1 1.9951 4.7436 0.2047 35 1 3.7215 5.4855 1.8845 36 1 4.2794 5.6657 0.2013 37 1 6.9630 2.7129 2.4207 38 1 6.6204 0.7161 3.8131 39 1 4.3430 -0.1398 4.1991 40 1 1.7824 0.0980 2.5147 41 1 1.9623 0.4133 4.2572 42 1 1.3025 1.6741 3.1881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = -29.873792 kcal Electronic energy + Delta-G solvation = -23059.300100 eV Core-core repulsion = 20003.530906 eV Total energy + Delta-G solvation = -3055.769193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87017 -38.75051 -38.45428 -35.52230 -33.39453 -32.87225 -31.59450 -30.76889 -27.76721 -27.50149 -25.72383 -24.89816 -24.42457 -21.99577 -21.69207 -20.27532 -19.03739 -18.35911 -17.52565 -17.18866 -16.39802 -16.02794 -15.68507 -15.52026 -15.12611 -14.95280 -14.52102 -14.32483 -14.29063 -13.87698 -13.74642 -13.51608 -13.19493 -13.04893 -12.67448 -12.57810 -12.47577 -12.29994 -12.12565 -12.00195 -11.77114 -11.73648 -11.47419 -11.43270 -11.21190 -10.71076 -10.32271 -9.41143 -9.04283 -8.95302 -8.41132 -6.18472 0.47338 0.55502 1.50870 1.56779 1.74137 2.42333 2.58434 2.84630 3.27425 3.53693 3.81339 3.90098 3.98313 4.16914 4.22260 4.29619 4.43205 4.52670 4.53843 4.58589 4.62437 4.65452 4.75963 4.80701 4.96878 5.03024 5.06333 5.13015 5.25936 5.31626 5.41127 5.43095 5.49304 5.58402 5.59501 5.67480 5.75841 5.84640 6.03618 6.07542 6.11167 6.52947 6.58021 6.63880 6.89799 7.58403 8.85714 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.007833 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.286829 B = 3573.541667 C = 4207.879318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.102 4.102 3 C 0.220 3.780 4 H -0.013 1.013 5 C -0.599 4.599 6 H 0.048 0.952 7 C -0.023 4.023 8 N -0.936 5.936 9 Si 1.096 2.904 10 H -0.295 1.295 11 H -0.276 1.276 12 H -0.272 1.272 13 N -0.652 5.652 14 C 0.139 3.861 15 H 0.095 0.905 16 C -0.190 4.190 17 C 0.064 3.936 18 O -0.339 6.339 19 C 0.112 3.888 20 C -0.184 4.184 21 C -0.084 4.084 22 C -0.174 4.174 23 C -0.035 4.035 24 C -0.094 4.094 25 C -0.164 4.164 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.020 0.980 30 H 0.038 0.962 31 H 0.256 0.744 32 H 0.337 0.663 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 4.226 11.996 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.005 0.995 5 C -0.638 4.638 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.573 5.573 9 Si 0.921 3.079 10 H -0.222 1.222 11 H -0.202 1.202 12 H -0.197 1.197 13 N -0.280 5.280 14 C 0.029 3.971 15 H 0.113 0.887 16 C -0.229 4.229 17 C -0.011 4.011 18 O -0.254 6.254 19 C 0.067 3.933 20 C -0.203 4.203 21 C -0.102 4.102 22 C -0.192 4.192 23 C -0.036 4.036 24 C -0.150 4.150 25 C -0.165 4.165 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.155 0.845 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.150 0.850 38 H 0.172 0.828 39 H 0.159 0.841 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.606 3.706 10.734 11.372 hybrid contribution 0.020 0.701 0.327 0.773 sum -0.586 4.407 11.061 11.921 Atomic orbital electron populations 1.21401 0.95044 0.99729 1.01205 1.21456 0.97120 0.98091 0.97434 1.18843 0.91983 0.90825 0.87252 0.99514 1.22672 1.29215 1.17948 0.93977 0.93333 1.26725 0.94547 0.95567 1.05448 1.70899 1.23741 1.32374 1.30310 0.83186 0.75929 0.75919 0.72859 1.22163 1.20166 1.19736 1.61171 1.05123 1.26387 1.35326 1.20199 0.90894 0.91211 0.94796 0.88721 1.23055 0.99211 0.99841 1.00763 1.23106 0.85451 0.90986 1.01580 1.85888 1.38501 1.34626 1.66362 1.19110 0.93900 0.88436 0.91898 1.20757 0.97631 0.99506 1.02392 1.21171 0.98067 0.94432 0.96536 1.21244 0.92243 1.01900 1.03847 1.20008 0.97534 0.92613 0.93432 1.20914 0.92075 1.02023 1.00011 1.19868 0.93328 0.99958 1.03340 0.94051 0.91449 0.94601 0.96134 0.94344 0.93370 0.84520 0.91082 0.89882 0.90338 0.86887 0.84960 0.82802 0.84069 0.91489 0.92193 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.47 9.46 71.98 0.68 -3.79 16 2 C -0.10 -4.60 5.19 30.60 0.16 -4.44 16 3 C 0.22 10.11 1.11 44.17 0.05 10.16 16 4 H -0.01 -0.72 5.66 -2.39 -0.01 -0.73 16 5 C -0.60 -30.14 5.08 25.60 0.13 -30.01 16 6 H 0.05 2.39 7.59 -2.91 -0.02 2.37 16 7 C -0.02 -1.26 5.14 84.66 0.44 -0.83 16 8 N -0.94 -56.23 12.95 21.45 0.28 -55.95 16 9 Si 1.10 49.31 29.92 68.60 2.05 51.36 16 10 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 N -0.65 -23.95 2.18 -476.95 -1.04 -24.99 16 14 C 0.14 4.85 2.35 44.21 0.10 4.96 16 15 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 16 C -0.19 -6.95 4.82 30.75 0.15 -6.80 16 17 C 0.06 2.03 7.03 72.11 0.51 2.54 16 18 O -0.34 -12.97 10.27 -91.80 -0.94 -13.91 16 19 C 0.11 4.26 6.47 22.52 0.15 4.40 16 20 C -0.18 -6.18 9.94 22.42 0.22 -5.96 16 21 C -0.08 -2.43 10.04 22.22 0.22 -2.21 16 22 C -0.17 -5.23 9.70 22.25 0.22 -5.01 16 23 C -0.04 -1.20 5.74 -19.83 -0.11 -1.31 16 24 C -0.09 -2.82 8.34 71.24 0.59 -2.22 16 25 C -0.16 -6.05 4.18 -19.75 -0.08 -6.13 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 2.31 7.04 -2.39 -0.02 2.29 16 28 H 0.03 1.49 7.54 -2.38 -0.02 1.47 16 29 H 0.02 1.05 6.46 -2.39 -0.02 1.04 16 30 H 0.04 1.63 5.95 -2.39 -0.01 1.62 16 31 H 0.26 15.87 6.23 -92.71 -0.58 15.29 16 32 H 0.34 11.97 7.82 -89.70 -0.70 11.27 16 33 H 0.07 3.39 5.11 -2.39 -0.01 3.37 16 34 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 39 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 40 H 0.07 2.25 5.20 -2.39 -0.01 2.24 16 41 H 0.06 1.48 8.10 -2.38 -0.02 1.46 16 42 H 0.08 2.46 6.02 -2.39 -0.01 2.45 16 Total: -1.00 -62.23 314.81 4.28 -57.94 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.52 Total: 32.20 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 3.42 Total: -46.65 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -0.76 Total: -80.95 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.94 Total: -13.91 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.05 Total: 51.36 kcal Total: -62.23 4.28 -57.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.071 kcal (2) G-P(sol) polarization free energy of solvation -62.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds