Wall clock time and date at job start Mon Mar 30 2020 02:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46814 * 2 1 4 4 H 1.09004 * 109.47407 * 52.30673 * 3 2 1 5 5 C 1.50705 * 109.47050 * 172.30579 * 3 2 1 6 6 H 1.08002 * 119.99651 * 120.00042 * 5 3 2 7 7 C 1.37874 * 119.99812 * 300.00241 * 5 3 2 8 8 N 1.31512 * 119.99600 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00375 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47352 * 89.99839 * 9 7 5 11 11 H 1.48498 * 109.47394 * 210.00364 * 9 7 5 12 12 H 1.48508 * 109.47153 * 329.99849 * 9 7 5 13 13 N 1.46900 * 109.47230 * 292.30774 * 3 2 1 14 14 C 1.46899 * 111.00380 * 120.07652 * 13 3 2 15 15 C 1.50707 * 115.54588 * 47.90392 * 14 13 3 16 16 C 1.38269 * 119.94242 * 201.67938 * 15 14 13 17 17 C 1.38143 * 120.05684 * 179.72571 * 16 15 14 18 18 C 1.38742 * 119.93827 * 0.51839 * 17 16 15 19 19 O 1.35904 * 120.04874 * 179.72632 * 18 17 16 20 20 C 1.42895 * 117.00286 * 0.02604 * 19 18 17 21 21 C 1.38725 * 119.88898 * 359.75364 * 18 17 16 22 22 C 1.38140 * 119.94827 * 359.97438 * 21 18 17 23 23 C 1.52994 * 117.50218 * 262.23737 * 14 13 3 24 24 C 1.52998 * 117.50207 * 193.57026 * 14 13 3 25 25 H 1.09001 * 109.47339 * 304.40468 * 1 2 3 26 26 H 1.09000 * 109.47048 * 64.40743 * 1 2 3 27 27 H 1.09001 * 109.46692 * 184.40069 * 1 2 3 28 28 H 1.08995 * 109.47562 * 240.00215 * 2 1 3 29 29 H 1.08993 * 109.47137 * 119.99862 * 2 1 3 30 30 H 0.97004 * 120.00048 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99861 * 356.12305 * 13 3 2 32 32 H 1.08007 * 119.96858 * 359.97259 * 16 15 14 33 33 H 1.07989 * 120.03111 * 180.29290 * 17 16 15 34 34 H 1.08998 * 109.46932 * 299.99710 * 20 19 18 35 35 H 1.08998 * 109.47095 * 59.99842 * 20 19 18 36 36 H 1.09002 * 109.46902 * 179.97438 * 20 19 18 37 37 H 1.08007 * 120.02607 * 179.97438 * 21 18 17 38 38 H 1.08000 * 119.97361 * 180.02562 * 22 21 18 39 39 H 1.09003 * 117.49998 * 359.97438 * 23 14 13 40 40 H 1.09001 * 117.50309 * 145.01795 * 23 14 13 41 41 H 1.09001 * 117.49688 * 214.97922 * 24 14 13 42 42 H 1.08999 * 117.49639 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5686 1.9946 0.8132 5 6 3.5350 1.4469 0.1902 6 1 4.1741 1.8795 -0.5652 7 6 4.0866 0.8985 1.3286 8 7 5.3912 0.9019 1.4944 9 14 2.9810 0.1509 2.6355 10 1 2.7724 -1.2898 2.3424 11 1 3.6203 0.2975 3.9678 12 1 1.6712 0.8508 2.6354 13 7 1.7075 2.0794 -1.2813 14 6 0.8512 3.2556 -1.0782 15 6 1.3088 4.2162 -0.0109 16 6 0.4025 5.0818 0.5732 17 6 0.8183 5.9593 1.5558 18 6 2.1487 5.9790 1.9487 19 8 2.5613 6.8453 2.9111 20 6 1.5713 7.7070 3.4761 21 6 3.0572 5.1134 1.3571 22 6 2.6352 4.2339 0.3790 23 6 -0.6563 3.0726 -1.2645 24 6 0.1561 3.8443 -2.3075 25 1 -0.3634 0.5807 0.8479 26 1 -0.3633 0.4439 -0.9268 27 1 -0.3633 -1.0247 0.0789 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 5.7794 0.5164 2.2955 31 1 1.2738 1.4208 -1.9107 32 1 -0.6322 5.0690 0.2638 33 1 0.1091 6.6319 2.0150 34 1 1.1380 8.3265 2.6908 35 1 0.7882 7.1064 3.9388 36 1 2.0325 8.3452 4.2298 37 1 4.0935 5.1272 1.6610 38 1 3.3420 3.5596 -0.0816 39 1 -1.0127 2.0795 -1.5383 40 1 -1.3172 3.6472 -0.6155 41 1 0.0294 4.9263 -2.3440 42 1 0.3346 3.3591 -3.2671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:49 Heat of formation + Delta-G solvation = 27.128409 kcal Electronic energy + Delta-G solvation = -22258.964045 eV Core-core repulsion = 19205.666653 eV Total energy + Delta-G solvation = -3053.297392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.96679 -38.66147 -36.23816 -35.07182 -32.02075 -30.82663 -30.05167 -29.27725 -27.05559 -26.89325 -22.88708 -22.58768 -22.18663 -21.62324 -20.15411 -19.15452 -17.80017 -16.77095 -16.07753 -15.49364 -15.46239 -15.06754 -14.60521 -14.37394 -13.71445 -13.52141 -13.24223 -12.93358 -12.68714 -12.58570 -12.49769 -12.03320 -11.81642 -11.67051 -11.43075 -11.33584 -11.12959 -10.94213 -10.65463 -10.63442 -10.39995 -10.01463 -9.91919 -9.80589 -9.39671 -9.15825 -8.52625 -8.36145 -7.65543 -7.20884 -6.05587 -4.00597 1.86780 1.96285 3.25256 3.39246 3.39453 3.57299 4.06008 4.40909 4.49819 4.80999 4.99964 5.06251 5.18229 5.21460 5.21802 5.30699 5.36214 5.50857 5.56204 5.67501 5.80803 5.86296 5.92236 5.95604 5.99534 6.08758 6.19219 6.36459 6.39926 6.48666 6.57814 6.63028 6.64798 6.77267 6.78046 6.91954 7.09216 7.34777 7.56067 7.73854 7.80685 7.91017 8.25445 8.69399 9.04128 9.57645 11.06663 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.008333 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.407178 B = 3359.287057 C = 4591.056570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.152 4.152 3 C 0.186 3.814 4 H 0.031 0.969 5 C -0.494 4.494 6 H 0.086 0.914 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.267 1.267 13 N -0.633 5.633 14 C 0.119 3.881 15 C -0.081 4.081 16 C -0.088 4.088 17 C -0.223 4.223 18 C 0.115 3.885 19 O -0.321 6.321 20 C 0.030 3.970 21 C -0.152 4.152 22 C -0.035 4.035 23 C -0.228 4.228 24 C -0.169 4.169 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.263 0.737 31 H 0.331 0.669 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.179 0.821 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 8.438 -1.123 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.190 4.190 3 C 0.078 3.922 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.104 0.896 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.705 3.295 10 H -0.208 1.208 11 H -0.225 1.225 12 H -0.192 1.192 13 N -0.261 5.261 14 C 0.025 3.975 15 C -0.082 4.082 16 C -0.106 4.106 17 C -0.242 4.242 18 C 0.070 3.930 19 O -0.235 6.235 20 C -0.065 4.065 21 C -0.170 4.170 22 C -0.053 4.053 23 C -0.267 4.267 24 C -0.207 4.207 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.147 0.853 38 H 0.195 0.805 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.678 8.760 -0.936 13.844 hybrid contribution -1.846 -0.932 1.155 2.368 sum -12.524 7.829 0.219 14.771 Atomic orbital electron populations 1.21982 0.98092 1.00317 1.01020 1.22469 0.93247 1.01439 1.01866 1.19817 0.97073 0.88421 0.86903 0.95172 1.20991 0.89334 1.37795 1.05115 0.89579 1.24895 0.94626 0.95756 0.97659 1.69869 1.09918 1.45650 1.27833 0.87045 0.81484 0.79579 0.81352 1.20776 1.22470 1.19154 1.60371 1.42831 1.08036 1.14888 1.20106 0.88092 0.94180 0.95091 1.18765 0.94086 0.97269 0.98031 1.20669 0.98797 0.95313 0.95852 1.20914 0.94756 1.04890 1.03642 1.19142 0.93006 0.91199 0.89645 1.86066 1.37197 1.48548 1.51646 1.22943 0.92504 0.93086 0.97985 1.20590 0.99620 0.97242 0.99560 1.21977 0.96504 0.93776 0.93026 1.23828 0.97024 1.01764 1.04128 1.23143 1.03791 0.99633 0.94150 0.93391 0.93208 0.93875 0.91755 0.92562 0.92674 0.85014 0.86611 0.86386 0.93077 0.93076 0.88813 0.85323 0.80450 0.88895 0.89220 0.88935 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.74 37.16 0.36 -2.32 16 2 C -0.15 -3.14 4.69 -26.73 -0.13 -3.27 16 3 C 0.19 4.14 0.85 -68.86 -0.06 4.08 16 4 H 0.03 0.73 5.28 -51.93 -0.27 0.46 16 5 C -0.49 -13.01 6.90 -34.44 -0.24 -13.25 16 6 H 0.09 2.49 7.52 -52.49 -0.39 2.10 16 7 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 8 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 9 Si 0.87 21.78 24.42 -169.99 -4.15 17.63 16 10 H -0.28 -6.82 6.81 56.52 0.38 -6.43 16 11 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 13 N -0.63 -12.26 6.05 -95.41 -0.58 -12.84 16 14 C 0.12 2.05 2.44 -132.75 -0.32 1.73 16 15 C -0.08 -1.51 4.57 -104.60 -0.48 -1.99 16 16 C -0.09 -1.44 9.22 -39.60 -0.37 -1.81 16 17 C -0.22 -3.56 9.04 -39.43 -0.36 -3.92 16 18 C 0.11 2.04 6.69 -39.22 -0.26 1.78 16 19 O -0.32 -5.23 10.50 -19.44 -0.20 -5.43 16 20 C 0.03 0.34 9.81 101.05 0.99 1.33 16 21 C -0.15 -3.02 9.99 -39.44 -0.39 -3.41 16 22 C -0.04 -0.74 7.88 -39.61 -0.31 -1.05 16 23 C -0.23 -3.27 9.41 -26.69 -0.25 -3.52 16 24 C -0.17 -2.41 10.00 -26.69 -0.27 -2.67 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.75 5.20 -51.93 -0.27 0.48 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.29 8.09 -51.93 -0.42 0.87 16 29 H 0.06 1.28 3.22 -51.93 -0.17 1.11 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.33 5.82 7.16 -39.29 -0.28 5.54 16 32 H 0.12 1.62 6.12 -52.48 -0.32 1.30 16 33 H 0.12 1.53 6.30 -52.49 -0.33 1.19 16 34 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 35 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.13 2.56 8.06 -52.48 -0.42 2.13 16 38 H 0.18 4.17 4.44 -52.49 -0.23 3.94 16 39 H 0.09 1.27 6.23 -51.93 -0.32 0.95 16 40 H 0.09 1.21 6.28 -51.93 -0.33 0.88 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -29.26 320.32 -7.37 -36.62 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.86 Total: 11.25 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -2.18 Total: -26.36 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.20 Total: -38.54 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.20 Total: -5.43 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.15 Total: 17.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.26 -7.37 -36.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.752 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds