Wall clock time and date at job start Mon Mar 30 2020 02:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46814 * 2 1 4 4 H 1.09004 * 109.47407 * 52.30673 * 3 2 1 5 5 C 1.50705 * 109.47050 * 172.30579 * 3 2 1 6 6 H 1.08002 * 119.99651 * 120.00042 * 5 3 2 7 7 C 1.37874 * 119.99812 * 300.00241 * 5 3 2 8 8 N 1.31512 * 119.99600 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00375 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47352 * 89.99839 * 9 7 5 11 11 H 1.48498 * 109.47394 * 210.00364 * 9 7 5 12 12 H 1.48508 * 109.47153 * 329.99849 * 9 7 5 13 13 N 1.46900 * 109.47230 * 292.30774 * 3 2 1 14 14 C 1.46899 * 111.00380 * 120.07652 * 13 3 2 15 15 C 1.50707 * 115.54588 * 47.90392 * 14 13 3 16 16 C 1.38269 * 119.94242 * 201.67938 * 15 14 13 17 17 C 1.38143 * 120.05684 * 179.72571 * 16 15 14 18 18 C 1.38742 * 119.93827 * 0.51839 * 17 16 15 19 19 O 1.35904 * 120.04874 * 179.72632 * 18 17 16 20 20 C 1.42895 * 117.00286 * 0.02604 * 19 18 17 21 21 C 1.38725 * 119.88898 * 359.75364 * 18 17 16 22 22 C 1.38140 * 119.94827 * 359.97438 * 21 18 17 23 23 C 1.52994 * 117.50218 * 262.23737 * 14 13 3 24 24 C 1.52998 * 117.50207 * 193.57026 * 14 13 3 25 25 H 1.09001 * 109.47339 * 304.40468 * 1 2 3 26 26 H 1.09000 * 109.47048 * 64.40743 * 1 2 3 27 27 H 1.09001 * 109.46692 * 184.40069 * 1 2 3 28 28 H 1.08995 * 109.47562 * 240.00215 * 2 1 3 29 29 H 1.08993 * 109.47137 * 119.99862 * 2 1 3 30 30 H 0.97004 * 120.00048 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99861 * 356.12305 * 13 3 2 32 32 H 1.08007 * 119.96858 * 359.97259 * 16 15 14 33 33 H 1.07989 * 120.03111 * 180.29290 * 17 16 15 34 34 H 1.08998 * 109.46932 * 299.99710 * 20 19 18 35 35 H 1.08998 * 109.47095 * 59.99842 * 20 19 18 36 36 H 1.09002 * 109.46902 * 179.97438 * 20 19 18 37 37 H 1.08007 * 120.02607 * 179.97438 * 21 18 17 38 38 H 1.08000 * 119.97361 * 180.02562 * 22 21 18 39 39 H 1.09003 * 117.49998 * 359.97438 * 23 14 13 40 40 H 1.09001 * 117.50309 * 145.01795 * 23 14 13 41 41 H 1.09001 * 117.49688 * 214.97922 * 24 14 13 42 42 H 1.08999 * 117.49639 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5686 1.9946 0.8132 5 6 3.5350 1.4469 0.1902 6 1 4.1741 1.8795 -0.5652 7 6 4.0866 0.8985 1.3286 8 7 5.3912 0.9019 1.4944 9 14 2.9810 0.1509 2.6355 10 1 2.7724 -1.2898 2.3424 11 1 3.6203 0.2975 3.9678 12 1 1.6712 0.8508 2.6354 13 7 1.7075 2.0794 -1.2813 14 6 0.8512 3.2556 -1.0782 15 6 1.3088 4.2162 -0.0109 16 6 0.4025 5.0818 0.5732 17 6 0.8183 5.9593 1.5558 18 6 2.1487 5.9790 1.9487 19 8 2.5613 6.8453 2.9111 20 6 1.5713 7.7070 3.4761 21 6 3.0572 5.1134 1.3571 22 6 2.6352 4.2339 0.3790 23 6 -0.6563 3.0726 -1.2645 24 6 0.1561 3.8443 -2.3075 25 1 -0.3634 0.5807 0.8479 26 1 -0.3633 0.4439 -0.9268 27 1 -0.3633 -1.0247 0.0789 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 5.7794 0.5164 2.2955 31 1 1.2738 1.4208 -1.9107 32 1 -0.6322 5.0690 0.2638 33 1 0.1091 6.6319 2.0150 34 1 1.1380 8.3265 2.6908 35 1 0.7882 7.1064 3.9388 36 1 2.0325 8.3452 4.2298 37 1 4.0935 5.1272 1.6610 38 1 3.3420 3.5596 -0.0816 39 1 -1.0127 2.0795 -1.5383 40 1 -1.3172 3.6472 -0.6155 41 1 0.0294 4.9263 -2.3440 42 1 0.3346 3.3591 -3.2671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:48 Heat of formation + Delta-G solvation = 7.694424 kcal Electronic energy + Delta-G solvation = -22259.806766 eV Core-core repulsion = 19205.666653 eV Total energy + Delta-G solvation = -3054.140113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28910 -39.95414 -37.64190 -36.58149 -34.06109 -32.23664 -31.40454 -30.63716 -28.74554 -28.06051 -24.46224 -24.00972 -23.39627 -22.99135 -21.79478 -20.56389 -19.15528 -18.67011 -17.44051 -16.86269 -16.66619 -16.58810 -16.17016 -15.69294 -15.29999 -15.01700 -14.71136 -14.41902 -14.22560 -13.97749 -13.84630 -13.47241 -13.44255 -13.00774 -12.82279 -12.61928 -12.50097 -12.37044 -12.28712 -12.09942 -11.69750 -11.60601 -11.46153 -11.33163 -11.14024 -10.90939 -10.63511 -9.79661 -9.07644 -8.60032 -8.22205 -6.17959 0.49215 0.56480 1.24295 1.32695 1.39627 2.32694 2.44901 2.75481 3.09216 3.18392 3.49958 3.76878 3.87787 4.02380 4.13121 4.26199 4.30891 4.32825 4.38694 4.41775 4.47874 4.56903 4.65391 4.69613 4.73256 4.82845 4.93700 4.99567 5.06693 5.07652 5.10594 5.18080 5.29392 5.33707 5.41422 5.48305 5.51459 5.75807 5.88568 6.05707 6.12925 6.54500 6.69618 6.84889 6.91481 7.42967 8.94312 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.008333 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.407178 B = 3359.287057 C = 4591.056570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.154 4.154 3 C 0.200 3.800 4 H 0.016 0.984 5 C -0.475 4.475 6 H 0.042 0.958 7 C 0.016 3.984 8 N -0.947 5.947 9 Si 0.931 3.069 10 H -0.267 1.267 11 H -0.307 1.307 12 H -0.255 1.255 13 N -0.645 5.645 14 C 0.080 3.920 15 C -0.089 4.089 16 C -0.081 4.081 17 C -0.211 4.211 18 C 0.111 3.889 19 O -0.343 6.343 20 C 0.018 3.982 21 C -0.181 4.181 22 C -0.063 4.063 23 C -0.203 4.203 24 C -0.151 4.151 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.261 0.739 31 H 0.342 0.658 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.138 0.862 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.486 9.339 -1.269 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C 0.091 3.909 4 H 0.033 0.967 5 C -0.514 4.514 6 H 0.060 0.940 7 C -0.181 4.181 8 N -0.588 5.588 9 Si 0.760 3.240 10 H -0.194 1.194 11 H -0.236 1.236 12 H -0.180 1.180 13 N -0.275 5.275 14 C -0.012 4.012 15 C -0.090 4.090 16 C -0.099 4.099 17 C -0.229 4.229 18 C 0.066 3.934 19 O -0.257 6.257 20 C -0.076 4.076 21 C -0.200 4.200 22 C -0.081 4.081 23 C -0.242 4.242 24 C -0.189 4.189 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.176 0.824 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.155 0.845 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.562 9.670 -1.105 18.355 hybrid contribution -0.318 -1.035 1.128 1.563 sum -15.880 8.635 0.023 18.076 Atomic orbital electron populations 1.21892 0.94561 1.01985 1.02016 1.22377 0.96424 0.99459 1.00981 1.19431 0.93673 0.89747 0.88036 0.96653 1.21222 0.91726 1.35126 1.03337 0.93978 1.25587 0.95595 0.96968 0.99940 1.70024 1.11873 1.48240 1.28675 0.86118 0.80032 0.79536 0.78266 1.19384 1.23557 1.17958 1.60126 1.44990 1.08776 1.13571 1.20181 0.90065 0.93684 0.97319 1.18978 0.93217 0.98190 0.98623 1.21030 0.99875 0.94027 0.94992 1.21332 0.94215 1.04628 1.02720 1.19120 0.93439 0.90954 0.89841 1.86041 1.39612 1.48856 1.51233 1.23342 0.92296 0.92918 0.99019 1.20507 0.99435 0.99143 1.00920 1.21592 0.97456 0.94607 0.94435 1.23885 0.94338 1.02663 1.03353 1.23239 1.01530 1.00580 0.93555 0.93822 0.90965 0.91677 0.91520 0.94605 0.93031 0.83849 0.82990 0.82416 0.91210 0.91885 0.86472 0.87654 0.84500 0.87721 0.87436 0.87618 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.74 71.98 0.70 -3.80 16 2 C -0.15 -6.18 4.69 30.60 0.14 -6.03 16 3 C 0.20 8.97 0.85 44.17 0.04 9.01 16 4 H 0.02 0.76 5.28 -2.39 -0.01 0.74 16 5 C -0.48 -26.52 6.90 25.60 0.18 -26.35 16 6 H 0.04 2.66 7.52 -2.91 -0.02 2.64 16 7 C 0.02 0.92 5.45 84.65 0.46 1.38 16 8 N -0.95 -59.80 13.96 21.45 0.30 -59.51 16 9 Si 0.93 46.36 24.42 68.60 1.68 48.03 16 10 H -0.27 -12.61 6.81 99.48 0.68 -11.93 16 11 H -0.31 -15.61 7.11 99.48 0.71 -14.91 16 12 H -0.26 -12.07 6.53 99.48 0.65 -11.42 16 13 N -0.65 -24.74 6.05 -455.77 -2.76 -27.49 16 14 C 0.08 2.60 2.44 2.78 0.01 2.61 16 15 C -0.09 -3.25 4.57 -19.85 -0.09 -3.34 16 16 C -0.08 -2.38 9.22 22.25 0.21 -2.18 16 17 C -0.21 -6.04 9.04 22.37 0.20 -5.84 16 18 C 0.11 3.93 6.69 22.51 0.15 4.08 16 19 O -0.34 -10.92 10.50 -92.47 -0.97 -11.89 16 20 C 0.02 0.35 9.81 113.37 1.11 1.46 16 21 C -0.18 -7.71 9.99 22.36 0.22 -7.49 16 22 C -0.06 -2.78 7.88 22.25 0.18 -2.60 16 23 C -0.20 -4.84 9.41 30.62 0.29 -4.55 16 24 C -0.15 -3.73 10.00 30.62 0.31 -3.42 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.86 5.20 -2.39 -0.01 1.85 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 2.60 8.09 -2.39 -0.02 2.58 16 29 H 0.04 1.58 3.22 -2.39 -0.01 1.57 16 30 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.34 11.43 7.16 -89.69 -0.64 10.79 16 32 H 0.15 3.33 6.12 -2.91 -0.02 3.32 16 33 H 0.16 3.23 6.30 -2.92 -0.02 3.21 16 34 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 35 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 36 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.14 7.08 4.44 -2.91 -0.01 7.07 16 39 H 0.10 2.28 6.23 -2.39 -0.01 2.27 16 40 H 0.11 2.21 6.28 -2.39 -0.01 2.20 16 41 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -69.44 320.32 2.66 -66.78 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.31 Total: 31.11 kcal Atomic # 6 Polarization: -51.13 SS G_CDS: 4.10 Total: -47.03 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -2.46 Total: -87.00 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.97 Total: -11.89 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.68 Total: 48.03 kcal Total: -69.44 2.66 -66.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.473 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds