Wall clock time and date at job start Mon Mar 30 2020 02:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99777 * 2 1 4 4 C 1.38751 * 120.06034 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94561 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05676 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.11268 * 0.04189 * 6 5 4 8 8 C 1.38169 * 120.05135 * 0.23729 * 7 6 5 9 9 C 1.50700 * 120.02522 * 179.74160 * 8 7 6 10 10 H 1.09008 * 109.58515 * 137.33691 * 9 8 7 11 11 C 1.53192 * 109.58612 * 17.05666 * 9 8 7 12 12 C 1.53046 * 109.31298 * 185.57680 * 11 9 8 13 13 C 1.53039 * 109.53613 * 61.36056 * 12 11 9 14 14 H 1.09006 * 109.49872 * 58.58960 * 13 12 11 15 15 C 1.53004 * 109.49720 * 178.68188 * 13 12 11 16 16 C 1.53191 * 109.31704 * 298.63662 * 13 12 11 17 17 N 1.46914 * 109.58885 * 257.76476 * 9 8 7 18 18 C 1.36940 * 120.63111 * 353.39559 * 17 9 8 19 19 H 1.08007 * 119.99605 * 29.90116 * 18 17 9 20 20 C 1.38806 * 120.00405 * 209.90079 * 18 17 9 21 21 N 1.31622 * 120.00001 * 15.23216 * 20 18 17 22 22 Si 1.86802 * 120.00282 * 195.22764 * 20 18 17 23 23 H 1.48506 * 109.47155 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47253 * 120.00011 * 22 20 18 25 25 H 1.48501 * 109.47233 * 240.00562 * 22 20 18 26 26 H 1.09003 * 109.46935 * 60.00186 * 1 2 3 27 27 H 1.08999 * 109.47433 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47284 * 300.00450 * 1 2 3 29 29 H 1.07999 * 120.02761 * 0.04534 * 4 3 2 30 30 H 1.07997 * 119.97363 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.94561 * 180.02562 * 6 5 4 32 32 H 1.07998 * 119.97580 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.49943 * 305.52555 * 11 9 8 34 34 H 1.09000 * 109.50124 * 65.59680 * 11 9 8 35 35 H 1.09002 * 109.46220 * 181.38397 * 12 11 9 36 36 H 1.09000 * 109.45687 * 301.36027 * 12 11 9 37 37 H 1.09002 * 109.46773 * 60.00530 * 15 13 12 38 38 H 1.09004 * 109.46950 * 180.02562 * 15 13 12 39 39 H 1.08993 * 109.47320 * 300.00248 * 15 13 12 40 40 H 1.08997 * 109.58854 * 174.42078 * 16 13 12 41 41 H 1.08994 * 109.58717 * 294.84875 * 16 13 12 42 42 H 0.97000 * 119.99672 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 -0.0003 8 6 3.4311 1.2848 -0.0056 9 6 4.2537 0.0221 -0.0113 10 1 3.8205 -0.6993 0.6816 11 6 5.6902 0.3432 0.4132 12 6 6.5526 -0.9133 0.2719 13 6 6.5697 -1.3603 -1.1917 14 1 6.9613 -0.5551 -1.8134 15 6 7.4585 -2.5971 -1.3375 16 6 5.1432 -1.7006 -1.6343 17 7 4.2766 -0.5448 -1.3665 18 6 3.5048 -0.0062 -2.3612 19 1 3.2636 1.0466 -2.3475 20 6 3.0323 -0.8131 -3.3871 21 7 3.0614 -2.1229 -3.2607 22 14 2.3551 -0.0401 -4.9470 23 1 2.4323 1.4391 -4.8404 24 1 3.1549 -0.4952 -6.1125 25 1 0.9392 -0.4495 -5.1280 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2128 2.3204 -0.0002 30 1 1.3340 4.5113 -0.0011 31 1 3.7922 4.6380 -0.0005 32 1 5.1345 2.5751 -0.0003 33 1 6.0900 1.1322 -0.2236 34 1 5.6973 0.6749 1.4515 35 1 7.5697 -0.6941 0.5967 36 1 6.1377 -1.7097 0.8897 37 1 7.0654 -3.4022 -0.7166 38 1 7.4708 -2.9148 -2.3801 39 1 8.4727 -2.3553 -1.0197 40 1 5.1352 -1.9240 -2.7012 41 1 4.7834 -2.5644 -1.0753 42 1 2.7316 -2.6867 -3.9778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285549402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:45 Heat of formation + Delta-G solvation = 5.646235 kcal Electronic energy + Delta-G solvation = -22761.850381 eV Core-core repulsion = 19707.621452 eV Total energy + Delta-G solvation = -3054.228929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.76394 -37.71859 -36.54938 -33.45987 -32.64807 -29.97357 -29.49280 -29.38373 -26.74410 -25.50070 -25.14127 -22.50175 -21.96783 -21.10736 -19.86766 -18.76962 -17.47274 -16.43353 -15.52502 -15.36728 -14.95826 -14.63291 -14.02442 -13.79918 -13.63580 -13.46750 -13.29793 -13.00322 -12.63288 -12.18719 -12.10912 -11.69421 -11.61248 -11.21854 -11.19599 -11.07344 -10.86331 -10.70414 -10.50621 -10.42614 -10.14867 -10.00422 -9.89223 -9.77801 -9.33994 -9.23603 -8.33176 -8.26163 -7.42395 -6.45675 -5.63517 -3.05297 1.91863 2.08058 3.41481 3.49835 3.52866 3.99171 4.35002 4.62396 5.26222 5.32295 5.45615 5.51050 5.51997 5.54873 5.66470 5.71091 5.73399 5.76723 5.90692 5.96072 5.98589 6.06339 6.19699 6.22149 6.36215 6.42322 6.45293 6.53432 6.63291 6.65119 6.78574 6.84360 6.93951 6.96783 7.04852 7.07796 7.29360 7.42116 7.54350 7.80768 7.97200 8.13364 8.60767 9.36790 9.99224 10.57637 11.45157 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.009728 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.772045 B = 2877.638426 C = 4029.295799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.283 6.283 3 C 0.159 3.841 4 C -0.222 4.222 5 C -0.095 4.095 6 C -0.170 4.170 7 C -0.082 4.082 8 C -0.078 4.078 9 C 0.216 3.784 10 H 0.036 0.964 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.120 4.120 14 H 0.060 0.940 15 C -0.138 4.138 16 C 0.183 3.817 17 N -0.578 5.578 18 C -0.225 4.225 19 H 0.063 0.937 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.888 3.112 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.293 1.293 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.042 0.958 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.040 0.960 40 H 0.085 0.915 41 H 0.016 0.984 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 5.793 7.868 9.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.195 6.195 3 C 0.113 3.887 4 C -0.241 4.241 5 C -0.113 4.113 6 C -0.188 4.188 7 C -0.101 4.101 8 C -0.079 4.079 9 C 0.109 3.891 10 H 0.053 0.947 11 C -0.171 4.171 12 C -0.140 4.140 13 C -0.140 4.140 14 H 0.079 0.921 15 C -0.196 4.196 16 C 0.057 3.943 17 N -0.300 5.300 18 C -0.355 4.355 19 H 0.081 0.919 20 C -0.194 4.194 21 N -0.547 5.547 22 Si 0.719 3.281 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.220 1.220 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.061 0.939 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.034 0.966 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.867 5.460 7.741 9.513 hybrid contribution -0.797 0.509 -1.022 1.392 sum 0.071 5.969 6.719 8.988 Atomic orbital electron populations 1.22914 0.80097 1.03268 1.00043 1.86316 1.19647 1.26048 1.87480 1.18821 0.91951 0.84102 0.93852 1.21105 0.99420 0.92661 1.10925 1.20706 0.94603 0.96395 0.99590 1.20858 0.93846 0.97868 1.06256 1.20934 0.99832 0.91087 0.98203 1.19264 0.90629 0.95850 1.02174 1.19221 0.90481 0.90028 0.89322 0.94672 1.22155 0.97807 0.97819 0.99357 1.21438 0.97942 0.97442 0.97195 1.21839 0.99617 0.96827 0.95757 0.92107 1.21720 0.98294 0.98399 1.01197 1.20787 0.84239 0.88036 1.01222 1.44063 1.47343 1.35093 1.03524 1.19059 1.24268 0.91801 1.00396 0.91909 1.24975 0.99238 0.95204 0.99962 1.70033 1.50564 1.02257 1.31894 0.86419 0.78352 0.78873 0.84461 1.20383 1.21732 1.22015 0.93178 0.88882 0.93908 0.86364 0.86955 0.86921 0.85617 0.91966 0.93178 0.93818 0.92925 0.93294 0.93080 0.94097 0.89658 0.96567 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 16 2 O -0.28 -6.06 9.58 -19.42 -0.19 -6.25 16 3 C 0.16 3.26 5.64 -39.22 -0.22 3.04 16 4 C -0.22 -3.89 9.04 -39.44 -0.36 -4.25 16 5 C -0.09 -1.51 10.04 -39.61 -0.40 -1.90 16 6 C -0.17 -2.74 10.04 -39.56 -0.40 -3.13 16 7 C -0.08 -1.48 9.11 -39.60 -0.36 -1.84 16 8 C -0.08 -1.61 3.59 -104.47 -0.37 -1.98 16 9 C 0.22 4.68 2.76 -68.76 -0.19 4.49 16 10 H 0.04 0.83 7.93 -51.92 -0.41 0.42 16 11 C -0.13 -2.39 4.47 -26.61 -0.12 -2.51 16 12 C -0.10 -1.79 5.17 -26.69 -0.14 -1.93 16 13 C -0.12 -2.33 2.87 -90.50 -0.26 -2.59 16 14 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.14 -2.29 9.20 37.16 0.34 -1.95 16 16 C 0.18 4.39 4.57 -3.71 -0.02 4.37 16 17 N -0.58 -14.44 2.99 -166.09 -0.50 -14.94 16 18 C -0.23 -6.16 8.10 -15.06 -0.12 -6.28 16 19 H 0.06 1.77 6.48 -52.48 -0.34 1.43 16 20 C 0.00 0.11 4.94 -17.43 -0.09 0.03 16 21 N -0.90 -26.33 11.22 55.49 0.62 -25.71 16 22 Si 0.89 22.33 29.58 -169.99 -5.03 17.30 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 26 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.04 0.57 7.66 -51.93 -0.40 0.17 16 29 H 0.12 1.79 6.30 -52.49 -0.33 1.46 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.13 2.06 5.83 -52.49 -0.31 1.76 16 33 H 0.06 1.13 6.42 -51.93 -0.33 0.79 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 2.30 6.14 -51.93 -0.32 1.98 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 326.17 15.07 4.92 4.92 Total: -1.00 -30.49 326.17 -8.50 -38.99 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.62 Total: 0.63 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -1.71 Total: -14.93 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.13 Total: -40.65 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.19 Total: -6.25 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.49 -8.50 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285549402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.639 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds