Wall clock time and date at job start Mon Mar 30 2020 02:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99777 * 2 1 4 4 C 1.38751 * 120.06034 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94561 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05676 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.11268 * 0.04189 * 6 5 4 8 8 C 1.38169 * 120.05135 * 0.23729 * 7 6 5 9 9 C 1.50700 * 120.02522 * 179.74160 * 8 7 6 10 10 H 1.09008 * 109.58515 * 137.33691 * 9 8 7 11 11 C 1.53192 * 109.58612 * 17.05666 * 9 8 7 12 12 C 1.53046 * 109.31298 * 185.57680 * 11 9 8 13 13 C 1.53039 * 109.53613 * 61.36056 * 12 11 9 14 14 H 1.09006 * 109.49872 * 58.58960 * 13 12 11 15 15 C 1.53004 * 109.49720 * 178.68188 * 13 12 11 16 16 C 1.53191 * 109.31704 * 298.63662 * 13 12 11 17 17 N 1.46914 * 109.58885 * 257.76476 * 9 8 7 18 18 C 1.36940 * 120.63111 * 353.39559 * 17 9 8 19 19 H 1.08007 * 119.99605 * 29.90116 * 18 17 9 20 20 C 1.38806 * 120.00405 * 209.90079 * 18 17 9 21 21 N 1.31622 * 120.00001 * 15.23216 * 20 18 17 22 22 Si 1.86802 * 120.00282 * 195.22764 * 20 18 17 23 23 H 1.48506 * 109.47155 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47253 * 120.00011 * 22 20 18 25 25 H 1.48501 * 109.47233 * 240.00562 * 22 20 18 26 26 H 1.09003 * 109.46935 * 60.00186 * 1 2 3 27 27 H 1.08999 * 109.47433 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47284 * 300.00450 * 1 2 3 29 29 H 1.07999 * 120.02761 * 0.04534 * 4 3 2 30 30 H 1.07997 * 119.97363 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.94561 * 180.02562 * 6 5 4 32 32 H 1.07998 * 119.97580 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.49943 * 305.52555 * 11 9 8 34 34 H 1.09000 * 109.50124 * 65.59680 * 11 9 8 35 35 H 1.09002 * 109.46220 * 181.38397 * 12 11 9 36 36 H 1.09000 * 109.45687 * 301.36027 * 12 11 9 37 37 H 1.09002 * 109.46773 * 60.00530 * 15 13 12 38 38 H 1.09004 * 109.46950 * 180.02562 * 15 13 12 39 39 H 1.08993 * 109.47320 * 300.00248 * 15 13 12 40 40 H 1.08997 * 109.58854 * 174.42078 * 16 13 12 41 41 H 1.08994 * 109.58717 * 294.84875 * 16 13 12 42 42 H 0.97000 * 119.99672 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 -0.0003 8 6 3.4311 1.2848 -0.0056 9 6 4.2537 0.0221 -0.0113 10 1 3.8205 -0.6993 0.6816 11 6 5.6902 0.3432 0.4132 12 6 6.5526 -0.9133 0.2719 13 6 6.5697 -1.3603 -1.1917 14 1 6.9613 -0.5551 -1.8134 15 6 7.4585 -2.5971 -1.3375 16 6 5.1432 -1.7006 -1.6343 17 7 4.2766 -0.5448 -1.3665 18 6 3.5048 -0.0062 -2.3612 19 1 3.2636 1.0466 -2.3475 20 6 3.0323 -0.8131 -3.3871 21 7 3.0614 -2.1229 -3.2607 22 14 2.3551 -0.0401 -4.9470 23 1 2.4323 1.4391 -4.8404 24 1 3.1549 -0.4952 -6.1125 25 1 0.9392 -0.4495 -5.1280 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2128 2.3204 -0.0002 30 1 1.3340 4.5113 -0.0011 31 1 3.7922 4.6380 -0.0005 32 1 5.1345 2.5751 -0.0003 33 1 6.0900 1.1322 -0.2236 34 1 5.6973 0.6749 1.4515 35 1 7.5697 -0.6941 0.5967 36 1 6.1377 -1.7097 0.8897 37 1 7.0654 -3.4022 -0.7166 38 1 7.4708 -2.9148 -2.3801 39 1 8.4727 -2.3553 -1.0197 40 1 5.1352 -1.9240 -2.7012 41 1 4.7834 -2.5644 -1.0753 42 1 2.7316 -2.6867 -3.9778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285549402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:44 Heat of formation + Delta-G solvation = -11.209550 kcal Electronic energy + Delta-G solvation = -22762.581303 eV Core-core repulsion = 19707.621452 eV Total energy + Delta-G solvation = -3054.959851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20624 -39.33260 -37.97130 -35.23616 -34.33094 -31.83789 -30.88565 -30.79666 -28.07386 -27.28579 -26.85410 -24.02070 -23.63026 -22.54191 -21.42585 -20.44016 -18.91830 -18.29993 -17.11100 -16.94366 -16.39344 -16.26299 -15.70672 -15.30540 -15.23179 -15.04845 -14.80907 -14.53718 -14.15597 -13.90832 -13.48951 -13.16496 -13.05888 -12.84925 -12.79400 -12.68219 -12.55062 -12.38569 -12.19374 -11.95241 -11.83944 -11.66182 -11.48303 -11.38742 -10.97471 -10.92411 -10.44963 -9.63583 -8.85503 -8.47895 -7.74881 -5.18460 0.55600 0.71911 1.39286 1.42191 1.51121 2.53697 2.65086 2.99088 3.39828 3.85404 3.93168 4.02008 4.08996 4.20174 4.27376 4.31472 4.39914 4.40840 4.47408 4.63611 4.66580 4.70056 4.72412 4.87730 4.90536 4.94862 5.02149 5.08381 5.12651 5.20229 5.29115 5.39986 5.44506 5.51132 5.60407 5.66718 5.70064 5.77491 5.81023 5.91843 6.10549 6.51514 6.75139 7.27504 7.98320 8.51937 9.31761 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.009728 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.772045 B = 2877.638426 C = 4029.295799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.326 6.326 3 C 0.129 3.871 4 C -0.227 4.227 5 C -0.090 4.090 6 C -0.166 4.166 7 C -0.087 4.087 8 C -0.113 4.113 9 C 0.214 3.786 10 H 0.004 0.996 11 C -0.123 4.123 12 C -0.099 4.099 13 C -0.112 4.112 14 H 0.055 0.945 15 C -0.132 4.132 16 C 0.190 3.810 17 N -0.592 5.592 18 C -0.210 4.210 19 H 0.055 0.945 20 C -0.050 4.050 21 N -0.935 5.935 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.296 1.296 26 H 0.049 0.951 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.049 0.951 41 H -0.015 1.015 42 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 8.555 8.826 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.239 6.239 3 C 0.083 3.917 4 C -0.246 4.246 5 C -0.108 4.108 6 C -0.184 4.184 7 C -0.105 4.105 8 C -0.114 4.114 9 C 0.108 3.892 10 H 0.022 0.978 11 C -0.162 4.162 12 C -0.136 4.136 13 C -0.132 4.132 14 H 0.074 0.926 15 C -0.190 4.190 16 C 0.064 3.936 17 N -0.314 5.314 18 C -0.341 4.341 19 H 0.073 0.927 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.773 3.227 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.224 1.224 26 H 0.067 0.933 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.156 0.844 30 H 0.168 0.832 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.003 0.997 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.788 8.249 8.720 12.136 hybrid contribution -1.141 -0.282 -1.232 1.703 sum 0.647 7.966 7.488 10.952 Atomic orbital electron populations 1.23105 0.78116 1.04095 1.01394 1.86238 1.22045 1.27532 1.88048 1.19179 0.92469 0.84679 0.95352 1.21416 1.00473 0.92404 1.10319 1.21198 0.95067 0.97039 0.97465 1.21294 0.94089 0.98629 1.04399 1.21177 1.00794 0.90787 0.97762 1.19391 0.91010 0.96182 1.04801 1.19289 0.93085 0.90087 0.86695 0.97819 1.22051 0.95090 0.98216 1.00793 1.21433 0.99828 0.96953 0.95408 1.21674 0.96469 0.97964 0.97062 0.92632 1.21666 0.99350 0.96969 1.00994 1.20590 0.87253 0.87157 0.98596 1.44313 1.47278 1.34971 1.04854 1.19116 1.23022 0.91341 1.00605 0.92716 1.25576 1.00674 0.95604 1.02576 1.70185 1.52483 1.03286 1.32339 0.85555 0.77396 0.78303 0.81494 1.19700 1.21861 1.22354 0.93275 0.88497 0.90879 0.84445 0.83212 0.83388 0.84245 0.91533 0.90605 0.90181 0.93450 0.93289 0.93783 0.90836 0.93222 0.99662 0.94823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.81 113.37 1.11 2.02 16 2 O -0.33 -14.42 9.58 -92.40 -0.88 -15.30 16 3 C 0.13 5.30 5.64 22.51 0.13 5.43 16 4 C -0.23 -7.56 9.04 22.36 0.20 -7.35 16 5 C -0.09 -2.53 10.04 22.25 0.22 -2.31 16 6 C -0.17 -4.73 10.04 22.28 0.22 -4.51 16 7 C -0.09 -2.94 9.11 22.26 0.20 -2.74 16 8 C -0.11 -4.63 3.59 -19.77 -0.07 -4.70 16 9 C 0.21 9.44 2.76 44.23 0.12 9.56 16 10 H 0.00 0.21 7.93 -2.38 -0.02 0.19 16 11 C -0.12 -4.26 4.47 30.67 0.14 -4.12 16 12 C -0.10 -3.27 5.17 30.62 0.16 -3.11 16 13 C -0.11 -4.28 2.87 -10.72 -0.03 -4.31 16 14 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 15 C -0.13 -4.22 9.20 71.98 0.66 -3.56 16 16 C 0.19 9.52 4.57 86.36 0.39 9.91 16 17 N -0.59 -30.54 2.99 -679.40 -2.03 -32.57 16 18 C -0.21 -11.79 8.10 84.03 0.68 -11.11 16 19 H 0.06 3.14 6.48 -2.91 -0.02 3.12 16 20 C -0.05 -2.90 4.94 84.86 0.42 -2.48 16 21 N -0.93 -57.27 11.22 21.65 0.24 -57.02 16 22 Si 0.94 47.04 29.58 68.60 2.03 49.07 16 23 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 26 H 0.05 1.57 7.66 -2.39 -0.02 1.55 16 27 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.07 1.88 7.66 -2.38 -0.02 1.86 16 29 H 0.14 3.87 6.30 -2.91 -0.02 3.85 16 30 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.14 4.19 5.83 -2.91 -0.02 4.18 16 33 H 0.07 2.26 6.42 -2.39 -0.02 2.24 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 2.82 6.14 -2.39 -0.01 2.81 16 41 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 42 H 0.24 14.50 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -69.59 326.17 4.91 -64.68 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.99 Total: 14.54 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 4.56 Total: -23.39 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -1.79 Total: -89.60 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.88 Total: -15.30 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -69.59 4.91 -64.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285549402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.470 kcal (2) G-P(sol) polarization free energy of solvation -69.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds