Wall clock time and date at job start Mon Mar 30 2020 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.27370 * 2 1 4 4 C 1.53995 * 110.30846 * 237.91958 * 2 1 3 5 5 N 1.48132 * 106.94115 * 242.33911 * 4 2 1 6 6 C 1.46902 * 110.94760 * 214.09816 * 5 4 2 7 7 C 1.50695 * 109.47421 * 287.36741 * 6 5 4 8 8 C 1.38634 * 119.74970 * 269.72611 * 7 6 5 9 9 C 1.37624 * 120.24610 * 179.76378 * 8 7 6 10 10 C 1.40721 * 119.74352 * 0.53071 * 9 8 7 11 11 C 1.41387 * 120.23840 * 179.74702 * 10 9 8 12 12 H 1.07996 * 120.00803 * 24.37278 * 11 10 9 13 13 C 1.39949 * 119.99891 * 204.36727 * 11 10 9 14 14 N 1.30828 * 119.99806 * 17.87723 * 13 11 10 15 15 Si 1.86800 * 120.00367 * 197.87482 * 13 11 10 16 16 H 1.48496 * 109.47044 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47070 * 119.99940 * 15 13 11 18 18 H 1.48503 * 109.47096 * 239.99805 * 15 13 11 19 19 C 1.40712 * 119.51005 * 359.72242 * 10 9 8 20 20 C 1.37611 * 119.74799 * 0.02562 * 19 10 9 21 21 C 1.48531 * 105.82148 * 334.58556 * 5 4 2 22 22 C 1.54591 * 110.31064 * 122.09731 * 2 1 3 23 23 H 1.08998 * 110.72431 * 22.33191 * 22 2 1 24 24 C 1.52999 * 110.72084 * 259.23019 * 22 2 1 25 25 O 1.42902 * 109.47178 * 174.99634 * 24 22 2 26 26 H 1.08999 * 109.47100 * 299.29856 * 1 2 3 27 27 H 1.08993 * 109.47217 * 179.29008 * 1 2 3 28 28 H 1.09005 * 109.47277 * 59.28970 * 1 2 3 29 29 H 1.09001 * 109.91865 * 1.65544 * 4 2 1 30 30 H 1.08991 * 109.92072 * 122.95331 * 4 2 1 31 31 H 1.09001 * 109.46953 * 47.37099 * 6 5 4 32 32 H 1.09001 * 109.46914 * 167.36448 * 6 5 4 33 33 H 1.07991 * 119.87542 * 359.97438 * 8 7 6 34 34 H 1.07999 * 120.12829 * 180.23611 * 9 8 7 35 35 H 0.96998 * 119.99875 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.12226 * 179.97438 * 19 10 9 37 37 H 1.08007 * 119.87395 * 179.97438 * 20 19 10 38 38 H 1.08999 * 110.67093 * 280.83084 * 21 5 4 39 39 H 1.09003 * 110.66371 * 157.70441 * 21 5 4 40 40 H 1.08997 * 109.47434 * 294.99785 * 24 22 2 41 41 H 1.08998 * 109.47367 * 55.00235 * 24 22 2 42 42 H 0.96698 * 114.00659 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0645 -0.7670 -1.2237 5 7 2.8312 -1.9242 -0.7066 6 6 3.9750 -2.2276 -1.5771 7 6 3.4808 -2.8501 -2.8574 8 6 3.3491 -4.2272 -2.9467 9 6 2.8940 -4.8062 -4.1094 10 6 2.5727 -3.9954 -5.2137 11 6 2.1094 -4.5795 -6.4151 12 1 1.6314 -5.5477 -6.3956 13 6 2.2702 -3.9029 -7.6296 14 7 3.1338 -2.9247 -7.7240 15 14 1.2518 -4.3965 -9.1157 16 1 0.3559 -5.5229 -8.7499 17 1 0.4356 -3.2393 -9.5629 18 1 2.1548 -4.8200 -10.2160 19 6 2.7153 -2.5991 -5.1133 20 6 3.1671 -2.0416 -3.9391 21 6 3.2855 -1.5342 0.6527 22 6 2.0666 -0.7704 1.2282 23 1 1.3161 -1.4646 1.6061 24 6 2.5053 0.2001 2.3266 25 8 2.8861 -0.5375 3.4898 26 1 -0.3633 0.5029 0.8962 27 1 -0.3633 -1.0275 -0.0127 28 1 -0.3634 0.5248 -0.8836 29 1 1.2326 -1.1158 -1.8358 30 1 2.7161 -0.1207 -1.8115 31 1 4.5127 -1.3071 -1.8045 32 1 4.6436 -2.9229 -1.0695 33 1 3.6012 -4.8478 -2.0996 34 1 2.7885 -5.8790 -4.1756 35 1 3.2455 -2.4561 -8.5659 36 1 2.4719 -1.9675 -5.9549 37 1 3.2778 -0.9701 -3.8600 38 1 4.1563 -0.8813 0.5948 39 1 3.5046 -2.4172 1.2530 40 1 3.3535 0.7875 1.9751 41 1 1.6791 0.8668 2.5737 42 1 3.1767 0.0149 4.2283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362062160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:45 Heat of formation + Delta-G solvation = -59.543998 kcal Electronic energy + Delta-G solvation = -21009.732169 eV Core-core repulsion = 17952.676379 eV Total energy + Delta-G solvation = -3057.055790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.59757 -39.26014 -37.44985 -35.84783 -34.43534 -32.01621 -31.15203 -31.08716 -28.56083 -27.02448 -25.92218 -23.96601 -22.90085 -21.95552 -21.62968 -20.68426 -19.21176 -18.13017 -17.16198 -16.93066 -16.53314 -16.25225 -15.76125 -15.54485 -15.21625 -14.69686 -14.45306 -14.40973 -14.03141 -13.87520 -13.78412 -13.48319 -13.26413 -13.15398 -12.84056 -12.66315 -12.39880 -12.23720 -12.17272 -11.94181 -11.75291 -11.65115 -11.47785 -11.34982 -11.21389 -10.98655 -10.80891 -9.39414 -9.27653 -9.13751 -8.63258 -6.31945 0.95123 1.17155 1.37485 1.49482 1.53092 2.21133 2.68429 3.12776 3.38361 3.63346 3.72348 3.81525 4.07321 4.23868 4.27705 4.33312 4.41422 4.50445 4.53427 4.60635 4.62313 4.64031 4.70290 4.76767 4.79977 4.91904 5.04513 5.06878 5.13492 5.17542 5.19881 5.26335 5.37572 5.45908 5.49225 5.72323 5.95372 6.04389 6.11869 6.20575 6.30385 6.41134 6.71782 6.95798 6.96316 7.05758 8.34108 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034181 B = 0.003554 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.980537 B = 7876.529839 C = 8237.350270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.092 0.908 4 C 0.045 3.955 5 N -0.527 5.527 6 C 0.117 3.883 7 C -0.193 4.193 8 C -0.076 4.076 9 C -0.245 4.245 10 C 0.080 3.920 11 C -0.503 4.503 12 H 0.072 0.928 13 C 0.035 3.965 14 N -0.826 5.826 15 Si 0.982 3.018 16 H -0.260 1.260 17 H -0.263 1.263 18 H -0.265 1.265 19 C -0.189 4.189 20 C -0.093 4.093 21 C 0.045 3.955 22 C -0.084 4.084 23 H 0.076 0.924 24 C 0.090 3.910 25 O -0.593 6.593 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.287 0.713 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 9.600 15.392 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 H 0.110 0.890 4 C -0.083 4.083 5 N -0.251 5.251 6 C -0.010 4.010 7 C -0.194 4.194 8 C -0.094 4.094 9 C -0.264 4.264 10 C 0.077 3.923 11 C -0.532 4.532 12 H 0.090 0.910 13 C -0.179 4.179 14 N -0.453 5.453 15 Si 0.802 3.198 16 H -0.183 1.183 17 H -0.188 1.188 18 H -0.190 1.190 19 C -0.208 4.208 20 C -0.112 4.112 21 C -0.082 4.082 22 C -0.103 4.103 23 H 0.095 0.905 24 C 0.013 3.987 25 O -0.401 6.401 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -1.862 8.791 14.867 17.371 hybrid contribution 0.436 0.718 -0.831 1.182 sum -1.425 9.508 14.035 17.013 Atomic orbital electron populations 1.21799 0.93563 1.01735 1.02452 1.21961 0.97073 0.99153 0.92561 0.88961 1.22929 0.97648 0.90787 0.96903 1.64843 1.21435 1.36470 1.02319 1.20803 0.91188 0.98246 0.90765 1.19254 1.11730 0.93178 0.95287 1.20625 0.98282 0.94479 0.96058 1.21159 1.11269 0.97861 0.96140 1.17950 0.89042 0.92413 0.92867 1.19839 1.36167 1.05019 0.92222 0.90992 1.26751 0.94269 0.93666 1.03245 1.69888 1.27380 1.19434 1.28552 0.85172 0.78699 0.79411 0.76483 1.18329 1.18777 1.18954 1.21230 1.07278 0.95066 0.97233 1.20700 0.99529 0.97675 0.93282 1.23222 0.96522 0.99068 0.89435 1.22092 0.97074 0.97126 0.93973 0.90540 1.22159 0.98986 0.92594 0.85005 1.86462 1.88586 1.39265 1.25791 0.90838 0.93587 0.92293 0.92448 0.94315 0.94744 0.90714 0.87187 0.88855 0.90205 0.88286 0.88246 0.93454 0.90760 0.92701 0.91704 0.75326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.88 71.98 0.64 -2.14 16 2 C -0.09 -1.93 3.16 -9.92 -0.03 -1.96 16 3 H 0.09 1.65 7.85 -2.39 -0.02 1.63 16 4 C 0.05 1.36 5.40 86.40 0.47 1.82 16 5 N -0.53 -17.04 5.24 -886.96 -4.65 -21.69 16 6 C 0.12 4.12 4.93 85.55 0.42 4.54 16 7 C -0.19 -8.47 5.18 -19.68 -0.10 -8.57 16 8 C -0.08 -3.51 9.67 22.22 0.21 -3.29 16 9 C -0.24 -12.70 9.80 22.73 0.22 -12.47 16 10 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16 11 C -0.50 -28.26 9.05 23.46 0.21 -28.05 16 12 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 13 C 0.04 1.83 5.14 85.26 0.44 2.27 16 14 N -0.83 -44.34 10.95 21.83 0.24 -44.10 16 15 Si 0.98 39.30 29.60 68.60 2.03 41.33 16 16 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 18 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 19 C -0.19 -10.26 8.70 22.73 0.20 -10.06 16 20 C -0.09 -4.41 9.02 22.22 0.20 -4.21 16 21 C 0.04 1.17 5.91 86.65 0.51 1.68 16 22 C -0.08 -1.83 2.87 -9.59 -0.03 -1.85 16 23 H 0.08 1.90 7.86 -2.39 -0.02 1.88 16 24 C 0.09 1.43 6.35 71.98 0.46 1.89 16 25 O -0.59 -10.13 13.60 -148.98 -2.03 -12.16 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.06 2.00 7.68 -2.39 -0.02 1.98 16 30 H 0.04 1.17 7.11 -2.39 -0.02 1.15 16 31 H 0.03 1.15 7.67 -2.39 -0.02 1.13 16 32 H 0.07 2.46 8.02 -2.39 -0.02 2.44 16 33 H 0.11 4.50 8.06 -2.92 -0.02 4.47 16 34 H 0.09 4.62 8.06 -2.91 -0.02 4.60 16 35 H 0.29 13.84 8.30 -92.71 -0.77 13.08 16 36 H 0.10 5.63 6.15 -2.91 -0.02 5.61 16 37 H 0.10 4.25 7.63 -2.91 -0.02 4.23 16 38 H 0.05 1.15 7.82 -2.39 -0.02 1.13 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 0.76 7.99 -2.39 -0.02 0.74 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 42 H 0.40 2.84 9.12 -74.06 -0.68 2.16 16 Total: -1.00 -64.29 338.29 -0.38 -64.67 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.32 Total: 28.00 kcal Atomic # 6 Polarization: -59.74 SS G_CDS: 3.70 Total: -56.04 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -4.41 Total: -65.79 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -2.03 Total: -12.16 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -64.29 -0.38 -64.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362062160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.123 kcal (2) G-P(sol) polarization free energy of solvation -64.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds