Wall clock time and date at job start Mon Mar 30 2020 01:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 C 1.50701 * 109.47024 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00074 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99965 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99665 * 0.02562 * 8 6 5 10 10 C 1.46497 * 119.99736 * 179.97438 * 8 6 5 11 11 C 1.50700 * 109.47135 * 90.00581 * 10 8 6 12 12 H 1.08006 * 119.99958 * 359.97438 * 11 10 8 13 13 C 1.37876 * 120.00496 * 179.97438 * 11 10 8 14 14 N 1.31512 * 119.99611 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00364 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47277 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46962 * 119.99819 * 15 13 11 18 18 H 1.48500 * 109.47356 * 239.99801 * 15 13 11 19 19 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 20 20 C 1.38237 * 119.99747 * 59.72563 * 19 2 1 21 21 C 1.38240 * 119.99788 * 179.81066 * 20 19 2 22 22 C 1.38236 * 119.99657 * 0.39831 * 21 20 19 23 23 C 1.38230 * 120.00403 * 359.85459 * 22 21 20 24 24 C 1.38232 * 120.00112 * 240.00114 * 19 2 1 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 31 31 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 32 32 H 1.09007 * 109.46899 * 90.00337 * 9 8 6 33 33 H 1.09002 * 109.46998 * 209.99454 * 9 8 6 34 34 H 1.08994 * 109.47697 * 329.99988 * 9 8 6 35 35 H 1.09000 * 109.47208 * 210.00077 * 10 8 6 36 36 H 1.09001 * 109.47844 * 330.00503 * 10 8 6 37 37 H 0.96995 * 120.00379 * 179.97438 * 14 13 11 38 38 H 1.08003 * 120.00234 * 0.02562 * 20 19 2 39 39 H 1.07995 * 119.99993 * 180.23158 * 21 20 19 40 40 H 1.08005 * 119.99783 * 179.83592 * 22 21 20 41 41 H 1.08000 * 120.00473 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.99991 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 6 2.1383 -0.6412 -3.7257 7 8 2.7588 -1.6775 -3.6167 8 7 1.8975 -0.1252 -4.9473 9 6 1.1475 1.1263 -5.0789 10 6 2.3869 -0.8152 -6.1433 11 6 1.3414 -1.7877 -6.6253 12 1 0.4061 -1.8825 -6.0936 13 6 1.5788 -2.5564 -7.7451 14 7 2.7174 -2.4405 -8.3928 15 14 0.2831 -3.7622 -8.3421 16 1 -0.8996 -3.7019 -7.4461 17 1 -0.1253 -3.4057 -9.7246 18 1 0.8439 -5.1372 -8.3306 19 6 2.0323 -0.7104 1.2305 20 6 1.6936 -2.0322 1.4521 21 6 2.1576 -2.6850 2.5788 22 6 2.9535 -2.0136 3.4881 23 6 3.2878 -0.6903 3.2691 24 6 2.8270 -0.0386 2.1405 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 0.5490 0.1471 -2.5390 31 1 2.0700 1.0675 -2.4494 32 1 1.8395 1.9684 -5.0601 33 1 0.6021 1.1255 -6.0227 34 1 0.4430 1.2165 -4.2522 35 1 2.5919 -0.0848 -6.9260 36 1 3.3022 -1.3558 -5.9021 37 1 2.8847 -2.9815 -9.1803 38 1 1.0694 -2.5559 0.7432 39 1 1.8961 -3.7187 2.7501 40 1 3.3138 -2.5228 4.3697 41 1 3.9092 -0.1656 3.9797 42 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129366070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:07 Heat of formation + Delta-G solvation = -51.176267 kcal Electronic energy + Delta-G solvation = -20663.501417 eV Core-core repulsion = 17606.808479 eV Total energy + Delta-G solvation = -3056.692938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81908 -40.18211 -36.96785 -36.42991 -34.73538 -32.35813 -31.74025 -30.15797 -29.32907 -27.32792 -26.36491 -24.69418 -23.64135 -22.93600 -20.69561 -19.89916 -18.71228 -17.98953 -17.51591 -17.05243 -16.73560 -16.31541 -15.90644 -15.80473 -15.08735 -14.74652 -14.47195 -14.33271 -14.11201 -13.92681 -13.77877 -13.46875 -13.41099 -13.22089 -13.04500 -12.79525 -12.71715 -12.45916 -12.41759 -12.22143 -12.06947 -11.80182 -11.67740 -11.48727 -11.33718 -10.66494 -10.55789 -9.77260 -9.54148 -9.39535 -8.23661 -6.38968 0.50517 0.54660 1.35020 1.37646 1.49589 1.89051 2.33096 2.49423 2.93328 3.05476 3.71753 3.74747 3.92743 4.16697 4.19375 4.25016 4.32916 4.37356 4.49935 4.54725 4.60330 4.69286 4.72165 4.74357 4.76828 4.97675 5.00483 5.07945 5.08223 5.11631 5.21718 5.22360 5.26570 5.40728 5.44162 5.56331 5.64055 5.67023 5.81743 5.85565 6.05507 6.18236 6.69461 6.82811 7.27675 7.52945 8.83622 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025457 B = 0.003398 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.634258 B = 8239.169049 C = 8645.942726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 H 0.099 0.901 4 C -0.087 4.087 5 C -0.122 4.122 6 C 0.488 3.512 7 O -0.604 6.604 8 N -0.614 5.614 9 C 0.078 3.922 10 C 0.257 3.743 11 C -0.542 4.542 12 H 0.053 0.947 13 C 0.005 3.995 14 N -0.930 5.930 15 Si 0.970 3.030 16 H -0.266 1.266 17 H -0.268 1.268 18 H -0.282 1.282 19 C -0.085 4.085 20 C -0.133 4.133 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.127 4.127 24 C -0.128 4.128 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.022 0.978 36 H -0.006 1.006 37 H 0.267 0.733 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 9.502 22.007 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.062 4.062 3 H 0.117 0.883 4 C -0.125 4.125 5 C -0.162 4.162 6 C 0.278 3.722 7 O -0.486 6.486 8 N -0.345 5.345 9 C -0.064 4.064 10 C 0.135 3.865 11 C -0.581 4.581 12 H 0.072 0.928 13 C -0.194 4.194 14 N -0.570 5.570 15 Si 0.794 3.206 16 H -0.190 1.190 17 H -0.193 1.193 18 H -0.208 1.208 19 C -0.085 4.085 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.146 4.146 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.040 0.960 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.513 8.942 21.884 24.067 hybrid contribution -0.116 -1.131 -0.912 1.458 sum -4.629 7.811 20.972 22.853 Atomic orbital electron populations 1.21907 0.93317 1.02062 1.02880 1.20162 0.96742 0.99355 0.89901 0.88323 1.21281 1.00311 0.98441 0.92491 1.21762 1.03834 1.00741 0.89835 1.21654 0.79548 0.85035 0.85959 1.90628 1.44023 1.26624 1.87347 1.48239 1.54542 1.25342 1.06388 1.21949 0.96403 0.84182 1.03874 1.18736 0.93893 0.91607 0.82229 1.21748 1.02474 1.22698 1.11140 0.92849 1.25907 0.98000 0.98881 0.96617 1.70061 1.25229 1.41810 1.19883 0.85334 0.78716 0.78114 0.78442 1.19016 1.19258 1.20779 1.20071 0.97679 0.94382 0.96413 1.21202 1.00863 0.95044 0.97973 1.21407 0.98363 1.00597 0.94705 1.21442 0.98611 0.95307 1.00007 1.21467 0.99965 0.95124 0.97895 1.21368 0.97852 1.00878 0.94492 0.91603 0.90710 0.93415 0.93543 0.93495 0.86582 0.86179 0.91103 0.91813 0.88370 0.95958 0.98797 0.92389 0.86717 0.85110 0.84301 0.83968 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.76 71.98 0.63 -1.81 16 2 C -0.04 -0.85 2.56 -11.54 -0.03 -0.88 16 3 H 0.10 1.53 7.88 -2.39 -0.02 1.51 16 4 C -0.09 -2.39 3.72 30.60 0.11 -2.27 16 5 C -0.12 -3.26 4.01 29.85 0.12 -3.14 16 6 C 0.49 20.63 7.67 87.66 0.67 21.30 16 7 O -0.60 -32.55 15.56 -3.03 -0.05 -32.59 16 8 N -0.61 -26.49 2.86 -851.14 -2.43 -28.92 16 9 C 0.08 2.28 10.24 127.77 1.31 3.58 16 10 C 0.26 14.31 5.16 85.63 0.44 14.75 16 11 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 12 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 13 C 0.00 0.27 5.46 84.65 0.46 0.74 16 14 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 15 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 19 C -0.09 -1.85 4.78 -19.87 -0.09 -1.94 16 20 C -0.13 -3.08 8.76 22.27 0.20 -2.89 16 21 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 22 C -0.14 -2.45 10.05 22.27 0.22 -2.23 16 23 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 24 C -0.13 -2.41 9.67 22.27 0.22 -2.20 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.07 6.57 -2.39 -0.02 1.06 16 27 H 0.05 0.91 7.38 -2.39 -0.02 0.89 16 28 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 29 H 0.05 1.50 7.54 -2.39 -0.02 1.48 16 30 H 0.12 2.49 5.82 -2.39 -0.01 2.48 16 31 H 0.12 2.39 8.11 -2.39 -0.02 2.37 16 32 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 34 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 35 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 36 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 37 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.11 2.72 7.16 -2.91 -0.02 2.69 16 39 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.14 1.99 7.95 -2.91 -0.02 1.96 16 Total: -1.00 -78.21 345.97 5.76 -72.45 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.98 Total: 11.80 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 4.95 Total: -13.26 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -2.15 Total: -86.07 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.05 Total: -32.59 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -78.21 5.76 -72.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129366070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.273 kcal (2) G-P(sol) polarization free energy of solvation -78.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds