Wall clock time and date at job start Mon Mar 30 2020 01:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99932 * 2 1 4 4 H 1.09003 * 109.47425 * 329.99991 * 3 2 1 5 5 C 1.53005 * 109.47256 * 90.00247 * 3 2 1 6 6 C 1.52998 * 109.47189 * 180.02562 * 5 3 2 7 7 C 1.52990 * 109.47053 * 299.99592 * 6 5 3 8 8 C 1.53000 * 109.47267 * 60.00338 * 7 6 5 9 9 H 1.08999 * 109.47179 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.46988 * 59.99841 * 8 7 6 11 11 C 1.39683 * 120.00157 * 85.00292 * 10 8 7 12 12 C 1.39342 * 119.94957 * 359.97438 * 11 10 8 13 13 C 1.38478 * 120.42180 * 179.97438 * 12 11 10 14 14 C 1.37694 * 120.32664 * 359.97438 * 13 12 11 15 15 C 1.40748 * 119.88977 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.20394 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00320 * 24.33462 * 16 15 14 18 18 C 1.39937 * 120.00153 * 204.33152 * 16 15 14 19 19 N 1.30825 * 119.99565 * 17.74871 * 18 16 15 20 20 Si 1.86803 * 119.99809 * 197.74995 * 18 16 15 21 21 H 1.48498 * 109.47320 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.46792 * 120.00132 * 20 18 16 23 23 H 1.48498 * 109.46517 * 239.99702 * 20 18 16 24 24 C 1.38272 * 119.95266 * 179.72473 * 11 10 8 25 25 C 1.52998 * 109.46808 * 299.99812 * 8 7 6 26 26 H 1.09003 * 109.47126 * 299.99726 * 1 2 3 27 27 H 1.08998 * 109.47266 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47293 * 59.99820 * 1 2 3 29 29 H 1.08999 * 109.46701 * 299.99879 * 5 3 2 30 30 H 1.09003 * 109.47112 * 59.99552 * 5 3 2 31 31 H 1.08998 * 109.47090 * 59.99991 * 6 5 3 32 32 H 1.08999 * 109.46582 * 179.97438 * 6 5 3 33 33 H 1.09009 * 109.47282 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47498 * 300.00148 * 7 6 5 35 35 H 0.96997 * 119.99753 * 264.99941 * 10 8 7 36 36 H 1.08001 * 119.78896 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.83695 * 179.97438 * 13 12 11 38 38 H 1.07999 * 120.04921 * 179.97438 * 14 13 12 39 39 H 0.97001 * 119.99394 * 180.02562 * 19 18 16 40 40 H 1.07994 * 120.16408 * 0.02562 * 24 11 10 41 41 H 1.08998 * 109.47090 * 299.99658 * 25 8 7 42 42 H 1.09003 * 109.47118 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 2.8394 3.1694 1.4425 7 6 4.1879 3.1277 0.7211 8 6 3.9805 2.6619 -0.7214 9 1 4.9412 2.6327 -1.2354 10 7 3.0859 3.5942 -1.4118 11 6 3.6022 4.7507 -2.0010 12 6 4.9681 5.0168 -1.9311 13 6 5.4905 6.1601 -2.5122 14 6 4.6649 7.0468 -3.1666 15 6 3.2830 6.7912 -3.2453 16 6 2.4290 7.6976 -3.9152 17 1 2.8257 8.3484 -4.6804 18 6 1.0698 7.7513 -3.5867 19 7 0.6491 7.2417 -2.4576 20 14 -0.1438 8.5506 -4.7605 21 1 0.5797 9.0467 -5.9586 22 1 -1.1623 7.5525 -5.1747 23 1 -0.8136 9.6884 -4.0808 24 6 2.7577 5.6271 -2.6573 25 6 3.3588 1.2639 -0.7214 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.2569 1.8014 1.9563 30 1 2.8829 1.0774 1.9564 31 1 2.1737 3.8630 0.9289 32 1 2.9867 3.5014 2.4702 33 1 4.6311 4.1237 0.7215 34 1 4.8535 2.4341 1.2348 35 1 2.1351 3.4084 -1.4597 36 1 5.6238 4.3266 -1.4211 37 1 6.5506 6.3572 -2.4520 38 1 5.0769 7.9372 -3.6179 39 1 -0.2931 7.2786 -2.2301 40 1 1.6994 5.4201 -2.7153 41 1 4.0245 0.5703 -0.2077 42 1 3.2106 0.9321 -1.7490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313443162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:27 Heat of formation + Delta-G solvation = -41.620797 kcal Electronic energy + Delta-G solvation = -21598.947599 eV Core-core repulsion = 18542.669017 eV Total energy + Delta-G solvation = -3056.278582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.59944 -37.71971 -36.46235 -33.90226 -32.84095 -30.40902 -29.63548 -29.33512 -26.86733 -26.39232 -25.16912 -22.51369 -22.11697 -20.84682 -20.44129 -18.79726 -17.15271 -16.80983 -15.85484 -15.60241 -15.18991 -14.75346 -14.72514 -14.42295 -14.12358 -13.81979 -13.09567 -12.87477 -12.67682 -12.49591 -12.20795 -11.91876 -11.77778 -11.71557 -11.59308 -11.23834 -11.01628 -10.94649 -10.65876 -10.51176 -10.50113 -10.35604 -10.11709 -9.59623 -9.47610 -9.39769 -9.19972 -8.71957 -7.28207 -6.71561 -6.13073 -4.29104 2.86806 3.10566 3.16396 3.25563 3.35479 3.69598 3.98878 4.30620 4.73376 4.78334 4.82777 5.10151 5.19350 5.27512 5.35105 5.37799 5.43423 5.57539 5.62922 5.70017 5.75043 5.86953 5.94382 6.06062 6.08798 6.26315 6.32281 6.35717 6.50341 6.54008 6.64873 6.92150 7.14131 7.16335 7.17854 7.40920 7.46678 7.84335 7.98996 8.14133 8.20147 8.51951 8.72849 8.86879 9.03806 9.14783 10.27034 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.005169 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.584434 B = 5415.469790 C = 6495.961041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.089 3.911 4 H 0.062 0.938 5 C -0.136 4.136 6 C -0.113 4.113 7 C -0.136 4.136 8 C 0.164 3.836 9 H 0.079 0.921 10 N -0.753 5.753 11 C 0.218 3.782 12 C -0.299 4.299 13 C -0.066 4.066 14 C -0.258 4.258 15 C 0.139 3.861 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.078 3.922 19 N -0.793 5.793 20 Si 0.902 3.098 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.276 1.276 24 C -0.232 4.232 25 C -0.120 4.120 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.386 0.614 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.276 0.724 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 -10.798 6.122 12.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C 0.032 3.968 4 H 0.080 0.920 5 C -0.174 4.174 6 C -0.151 4.151 7 C -0.175 4.175 8 C 0.058 3.942 9 H 0.097 0.903 10 N -0.387 5.387 11 C 0.120 3.880 12 C -0.321 4.321 13 C -0.085 4.085 14 C -0.279 4.279 15 C 0.136 3.864 16 C -0.495 4.495 17 H 0.094 0.906 18 C -0.139 4.139 19 N -0.419 5.419 20 Si 0.727 3.273 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.202 1.202 24 C -0.256 4.256 25 C -0.158 4.158 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.220 0.780 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.346 -11.058 6.326 12.744 hybrid contribution -1.255 0.583 -0.336 1.424 sum -1.601 -10.475 5.990 12.172 Atomic orbital electron populations 1.22762 0.81421 1.02341 1.00079 1.87875 1.19399 1.28354 1.95127 1.22147 0.95066 0.83971 0.95646 0.92039 1.22015 1.00989 0.97686 0.96726 1.21401 0.97512 0.95941 1.00250 1.22046 0.96998 1.02205 0.96226 1.20597 0.94394 0.87130 0.92121 0.90265 1.44559 1.08260 1.23172 1.62684 1.17633 0.92373 0.85761 0.92271 1.19908 0.92986 1.02531 1.16717 1.20289 0.96751 0.94296 0.97191 1.20855 0.94671 1.01228 1.11120 1.17316 0.90908 0.90142 0.88022 1.19586 0.92429 1.18585 1.18873 0.90618 1.25862 0.99327 0.94200 0.94494 1.69879 1.16614 1.36163 1.19219 0.86364 0.80198 0.79260 0.81468 1.18454 1.19893 1.20150 1.20711 0.98777 0.96233 1.09902 1.21860 0.95537 0.97411 1.01038 0.94193 0.89945 0.93958 0.92342 0.91467 0.91078 0.92243 0.90945 0.92202 0.77981 0.89484 0.89735 0.89506 0.91361 0.86682 0.90443 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.39 -5.11 10.35 -35.23 -0.36 -5.47 16 3 C 0.09 1.16 2.44 -26.73 -0.07 1.10 16 4 H 0.06 0.85 6.15 -51.93 -0.32 0.53 16 5 C -0.14 -1.67 5.54 -26.73 -0.15 -1.82 16 6 C -0.11 -1.53 5.76 -26.74 -0.15 -1.69 16 7 C -0.14 -1.91 5.54 -26.74 -0.15 -2.06 16 8 C 0.16 2.47 2.48 -67.93 -0.17 2.31 16 9 H 0.08 1.24 6.47 -51.93 -0.34 0.91 16 10 N -0.75 -13.81 4.40 -52.22 -0.23 -14.04 16 11 C 0.22 4.96 6.63 -83.86 -0.56 4.40 16 12 C -0.30 -6.64 8.85 -39.08 -0.35 -6.99 16 13 C -0.07 -1.53 10.02 -39.69 -0.40 -1.92 16 14 C -0.26 -6.52 9.79 -38.83 -0.38 -6.90 16 15 C 0.14 3.78 5.57 -106.85 -0.60 3.18 16 16 C -0.46 -12.57 9.05 -37.74 -0.34 -12.91 16 17 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 18 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 19 N -0.79 -20.57 10.95 55.55 0.61 -19.97 16 20 Si 0.90 18.91 29.60 -169.99 -5.03 13.88 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 C -0.23 -6.01 8.53 -38.68 -0.33 -6.34 16 25 C -0.12 -1.58 5.26 -26.73 -0.14 -1.73 16 26 H 0.04 0.38 7.87 -51.93 -0.41 -0.03 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.12 7.60 -51.93 -0.39 0.73 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.17 7.69 -51.92 -0.40 0.77 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.39 6.92 6.87 -40.82 -0.28 6.64 16 36 H 0.09 1.73 6.07 -52.49 -0.32 1.42 16 37 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 39 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 40 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -27.86 330.05 -9.35 -37.21 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -6.54 Total: 11.48 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -2.77 Total: -28.06 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.38 Total: -34.01 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.36 Total: -5.47 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.86 -9.35 -37.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313443162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.413 kcal (2) G-P(sol) polarization free energy of solvation -27.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds