Wall clock time and date at job start Mon Mar 30 2020 01:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99932 * 2 1 4 4 H 1.09003 * 109.47425 * 329.99991 * 3 2 1 5 5 C 1.53005 * 109.47256 * 90.00247 * 3 2 1 6 6 C 1.52998 * 109.47189 * 180.02562 * 5 3 2 7 7 C 1.52990 * 109.47053 * 299.99592 * 6 5 3 8 8 C 1.53000 * 109.47267 * 60.00338 * 7 6 5 9 9 H 1.08999 * 109.47179 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.46988 * 59.99841 * 8 7 6 11 11 C 1.39683 * 120.00157 * 85.00292 * 10 8 7 12 12 C 1.39342 * 119.94957 * 359.97438 * 11 10 8 13 13 C 1.38478 * 120.42180 * 179.97438 * 12 11 10 14 14 C 1.37694 * 120.32664 * 359.97438 * 13 12 11 15 15 C 1.40748 * 119.88977 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.20394 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00320 * 24.33462 * 16 15 14 18 18 C 1.39937 * 120.00153 * 204.33152 * 16 15 14 19 19 N 1.30825 * 119.99565 * 17.74871 * 18 16 15 20 20 Si 1.86803 * 119.99809 * 197.74995 * 18 16 15 21 21 H 1.48498 * 109.47320 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.46792 * 120.00132 * 20 18 16 23 23 H 1.48498 * 109.46517 * 239.99702 * 20 18 16 24 24 C 1.38272 * 119.95266 * 179.72473 * 11 10 8 25 25 C 1.52998 * 109.46808 * 299.99812 * 8 7 6 26 26 H 1.09003 * 109.47126 * 299.99726 * 1 2 3 27 27 H 1.08998 * 109.47266 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47293 * 59.99820 * 1 2 3 29 29 H 1.08999 * 109.46701 * 299.99879 * 5 3 2 30 30 H 1.09003 * 109.47112 * 59.99552 * 5 3 2 31 31 H 1.08998 * 109.47090 * 59.99991 * 6 5 3 32 32 H 1.08999 * 109.46582 * 179.97438 * 6 5 3 33 33 H 1.09009 * 109.47282 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47498 * 300.00148 * 7 6 5 35 35 H 0.96997 * 119.99753 * 264.99941 * 10 8 7 36 36 H 1.08001 * 119.78896 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.83695 * 179.97438 * 13 12 11 38 38 H 1.07999 * 120.04921 * 179.97438 * 14 13 12 39 39 H 0.97001 * 119.99394 * 180.02562 * 19 18 16 40 40 H 1.07994 * 120.16408 * 0.02562 * 24 11 10 41 41 H 1.08998 * 109.47090 * 299.99658 * 25 8 7 42 42 H 1.09003 * 109.47118 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 2.8394 3.1694 1.4425 7 6 4.1879 3.1277 0.7211 8 6 3.9805 2.6619 -0.7214 9 1 4.9412 2.6327 -1.2354 10 7 3.0859 3.5942 -1.4118 11 6 3.6022 4.7507 -2.0010 12 6 4.9681 5.0168 -1.9311 13 6 5.4905 6.1601 -2.5122 14 6 4.6649 7.0468 -3.1666 15 6 3.2830 6.7912 -3.2453 16 6 2.4290 7.6976 -3.9152 17 1 2.8257 8.3484 -4.6804 18 6 1.0698 7.7513 -3.5867 19 7 0.6491 7.2417 -2.4576 20 14 -0.1438 8.5506 -4.7605 21 1 0.5797 9.0467 -5.9586 22 1 -1.1623 7.5525 -5.1747 23 1 -0.8136 9.6884 -4.0808 24 6 2.7577 5.6271 -2.6573 25 6 3.3588 1.2639 -0.7214 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.2569 1.8014 1.9563 30 1 2.8829 1.0774 1.9564 31 1 2.1737 3.8630 0.9289 32 1 2.9867 3.5014 2.4702 33 1 4.6311 4.1237 0.7215 34 1 4.8535 2.4341 1.2348 35 1 2.1351 3.4084 -1.4597 36 1 5.6238 4.3266 -1.4211 37 1 6.5506 6.3572 -2.4520 38 1 5.0769 7.9372 -3.6179 39 1 -0.2931 7.2786 -2.2301 40 1 1.6994 5.4201 -2.7153 41 1 4.0245 0.5703 -0.2077 42 1 3.2106 0.9321 -1.7490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313443162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:26 Heat of formation + Delta-G solvation = -56.154848 kcal Electronic energy + Delta-G solvation = -21599.577843 eV Core-core repulsion = 18542.669017 eV Total energy + Delta-G solvation = -3056.908826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79951 -39.28984 -37.75547 -35.64351 -34.44493 -31.62157 -31.34447 -30.74086 -28.44283 -27.33889 -27.07320 -23.76882 -23.21478 -22.60661 -22.08244 -20.20494 -18.86528 -18.13704 -17.20559 -16.98298 -16.41462 -16.35536 -16.14606 -15.87727 -15.29590 -14.93414 -14.71677 -14.56210 -14.05415 -13.81780 -13.70211 -13.35774 -13.06705 -13.04223 -12.85562 -12.73832 -12.63186 -12.49383 -12.08755 -11.98109 -11.71719 -11.59848 -11.46347 -11.33026 -11.16449 -11.05168 -10.55298 -10.31179 -9.22167 -8.61322 -7.86348 -6.30553 1.09288 1.36328 1.37893 1.52253 1.58131 2.22954 2.72105 2.81478 2.85989 3.71513 3.76018 3.90345 4.04082 4.17986 4.23319 4.33760 4.46298 4.50110 4.51515 4.56200 4.63557 4.66596 4.80374 4.83799 4.88792 5.00191 5.04531 5.06042 5.14996 5.21058 5.28211 5.33697 5.37002 5.41365 5.52135 5.63574 5.99083 6.14304 6.22587 6.23859 6.30096 6.60698 6.96537 7.07893 7.08647 7.27385 8.38931 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.005169 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.584434 B = 5415.469790 C = 6495.961041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.090 3.910 4 H 0.047 0.953 5 C -0.128 4.128 6 C -0.110 4.110 7 C -0.131 4.131 8 C 0.161 3.839 9 H 0.079 0.921 10 N -0.745 5.745 11 C 0.226 3.774 12 C -0.298 4.298 13 C -0.063 4.063 14 C -0.287 4.287 15 C 0.109 3.891 16 C -0.505 4.505 17 H 0.069 0.931 18 C 0.038 3.962 19 N -0.822 5.822 20 Si 0.977 3.023 21 H -0.260 1.260 22 H -0.265 1.265 23 H -0.266 1.266 24 C -0.261 4.261 25 C -0.113 4.113 26 H 0.047 0.953 27 H 0.102 0.898 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.387 0.613 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.284 0.716 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 -12.391 7.098 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.032 3.968 4 H 0.065 0.935 5 C -0.166 4.166 6 C -0.148 4.148 7 C -0.170 4.170 8 C 0.056 3.944 9 H 0.097 0.903 10 N -0.377 5.377 11 C 0.125 3.875 12 C -0.321 4.321 13 C -0.082 4.082 14 C -0.308 4.308 15 C 0.106 3.894 16 C -0.535 4.535 17 H 0.087 0.913 18 C -0.176 4.176 19 N -0.448 5.448 20 Si 0.798 3.202 21 H -0.184 1.184 22 H -0.190 1.190 23 H -0.191 1.191 24 C -0.285 4.285 25 C -0.151 4.151 26 H 0.066 0.934 27 H 0.121 0.879 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.221 0.779 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.163 -12.688 7.329 14.654 hybrid contribution -1.255 0.965 -0.548 1.676 sum -1.418 -11.722 6.782 13.617 Atomic orbital electron populations 1.22945 0.80106 1.03795 1.00331 1.87844 1.20856 1.28054 1.95216 1.22090 0.94720 0.83929 0.96024 0.93506 1.21940 1.01549 0.96810 0.96286 1.21351 0.96696 0.96272 1.00479 1.22000 0.97692 1.01644 0.95673 1.20817 0.93766 0.87446 0.92375 0.90308 1.44666 1.08889 1.22286 1.61883 1.17720 0.92505 0.86306 0.91009 1.20246 0.93033 1.02690 1.16082 1.20656 0.98181 0.93698 0.95674 1.21003 0.94562 1.02367 1.12877 1.17695 0.92045 0.90852 0.88794 1.19817 0.94019 1.19756 1.19905 0.91263 1.26673 1.00499 0.94592 0.95867 1.69932 1.17440 1.36904 1.20491 0.85245 0.77513 0.78499 0.78932 1.18409 1.18951 1.19087 1.20639 0.98389 0.97324 1.12176 1.21778 0.95995 0.96194 1.01095 0.93438 0.87947 0.94255 0.91714 0.90076 0.93995 0.91003 0.93138 0.89254 0.77915 0.86595 0.86517 0.89503 0.90592 0.88503 0.88350 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.82 113.37 1.23 1.69 16 2 O -0.40 -9.67 10.35 -148.98 -1.54 -11.21 16 3 C 0.09 2.19 2.44 30.60 0.07 2.26 16 4 H 0.05 1.27 6.15 -2.39 -0.01 1.25 16 5 C -0.13 -2.82 5.54 30.60 0.17 -2.65 16 6 C -0.11 -2.80 5.76 30.59 0.18 -2.62 16 7 C -0.13 -3.40 5.54 30.59 0.17 -3.23 16 8 C 0.16 4.56 2.48 44.99 0.11 4.67 16 9 H 0.08 2.27 6.47 -2.39 -0.02 2.25 16 10 N -0.75 -27.16 4.40 -319.12 -1.40 -28.57 16 11 C 0.23 10.34 6.63 38.16 0.25 10.59 16 12 C -0.30 -12.93 8.85 22.59 0.20 -12.73 16 13 C -0.06 -2.87 10.02 22.20 0.22 -2.65 16 14 C -0.29 -14.90 9.79 22.75 0.22 -14.68 16 15 C 0.11 6.16 5.57 -21.31 -0.12 6.04 16 16 C -0.51 -28.55 9.05 23.46 0.21 -28.34 16 17 H 0.07 3.83 7.91 -2.91 -0.02 3.80 16 18 C 0.04 2.00 5.14 85.25 0.44 2.44 16 19 N -0.82 -43.98 10.95 21.82 0.24 -43.74 16 20 Si 0.98 39.54 29.60 68.60 2.03 41.57 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 24 C -0.26 -14.01 8.53 22.86 0.20 -13.82 16 25 C -0.11 -2.71 5.26 30.59 0.16 -2.55 16 26 H 0.05 0.82 7.87 -2.39 -0.02 0.80 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 0.76 8.09 -2.39 -0.02 0.74 16 29 H 0.06 1.35 7.87 -2.39 -0.02 1.34 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.31 7.60 -2.39 -0.02 1.29 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.54 7.69 -2.38 -0.02 1.53 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.39 14.07 6.87 -92.71 -0.64 13.43 16 36 H 0.12 4.32 6.07 -2.91 -0.02 4.30 16 37 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 38 H 0.09 4.34 8.06 -2.91 -0.02 4.31 16 39 H 0.28 13.70 8.30 -92.71 -0.77 12.93 16 40 H 0.10 5.45 6.16 -2.91 -0.02 5.44 16 41 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -61.73 330.05 3.41 -58.33 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: 0.37 Total: 39.21 kcal Atomic # 6 Polarization: -59.30 SS G_CDS: 3.71 Total: -55.59 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -1.17 Total: -72.31 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -1.54 Total: -11.21 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -61.73 3.41 -58.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313443162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.170 kcal (2) G-P(sol) polarization free energy of solvation -61.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds