Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00501 * 2 1 4 4 C 1.53002 * 109.47339 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47035 * 63.66194 * 4 3 2 6 6 C 1.36933 * 120.00304 * 266.92072 * 5 4 3 7 7 H 1.07993 * 120.00442 * 143.38769 * 6 5 4 8 8 C 1.38825 * 119.99650 * 323.39205 * 6 5 4 9 9 N 1.31615 * 119.99680 * 160.00494 * 8 6 5 10 10 Si 1.86794 * 119.99805 * 340.00238 * 8 6 5 11 11 H 1.48498 * 109.47016 * 95.26330 * 10 8 6 12 12 H 1.48499 * 109.47009 * 215.25933 * 10 8 6 13 13 H 1.48500 * 109.47452 * 335.26341 * 10 8 6 14 14 C 1.46503 * 119.99798 * 86.92130 * 5 4 3 15 15 C 1.53004 * 109.46941 * 90.00133 * 14 5 4 16 16 H 1.08994 * 115.55233 * 29.27569 * 15 14 5 17 17 C 1.53001 * 117.49840 * 243.60405 * 15 14 5 18 18 C 1.52998 * 60.00299 * 252.48740 * 17 15 14 19 19 H 1.09002 * 117.49857 * 107.48802 * 18 17 15 20 20 C 1.50699 * 117.50005 * 252.50971 * 18 17 15 21 21 C 1.38237 * 119.99809 * 8.33340 * 20 18 17 22 22 C 1.38228 * 119.99984 * 179.78813 * 21 20 18 23 23 C 1.38240 * 120.00046 * 0.44258 * 22 21 20 24 24 C 1.38242 * 119.99851 * 359.80979 * 23 22 21 25 25 C 1.38234 * 119.99900 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.46920 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46623 * 300.00221 * 1 2 3 28 28 H 1.08994 * 109.46760 * 59.99826 * 1 2 3 29 29 H 1.09006 * 109.47044 * 59.99940 * 3 2 1 30 30 H 1.09007 * 109.46854 * 300.00143 * 3 2 1 31 31 H 1.08992 * 109.47168 * 303.65763 * 4 3 2 32 32 H 1.09008 * 109.46914 * 183.66246 * 4 3 2 33 33 H 0.97006 * 119.99737 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47312 * 329.99927 * 14 5 4 35 35 H 1.09000 * 109.46993 * 209.99704 * 14 5 4 36 36 H 1.09002 * 117.49838 * 359.97438 * 17 15 14 37 37 H 1.08999 * 117.50106 * 144.99652 * 17 15 14 38 38 H 1.08005 * 119.99924 * 359.97438 * 21 20 18 39 39 H 1.07997 * 120.00633 * 180.27508 * 22 21 20 40 40 H 1.07997 * 120.00443 * 179.83444 * 23 22 21 41 41 H 1.07992 * 119.99957 * 180.02562 * 24 23 22 42 42 H 1.07996 * 120.00359 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9734 0.5352 -1.2387 6 6 4.1550 -0.8216 -1.2732 7 1 3.8961 -1.3787 -2.1614 8 6 4.6720 -1.4809 -0.1664 9 7 4.4899 -2.7771 -0.0282 10 14 5.6260 -0.5286 1.1267 11 1 4.7125 -0.1439 2.2324 12 1 6.7195 -1.3792 1.6614 13 1 6.2045 0.6944 0.5144 14 6 4.2170 1.3376 -2.4401 15 6 5.6781 1.7911 -2.4628 16 1 6.3851 1.1239 -1.9700 17 6 5.9525 3.2942 -2.3841 18 6 6.1648 2.5459 -3.7016 19 1 5.4440 2.7194 -4.5007 20 6 7.5850 2.3100 -4.1469 21 6 8.6341 2.6076 -3.2974 22 6 9.9367 2.3871 -3.7041 23 6 10.1906 1.8775 -4.9638 24 6 9.1416 1.5847 -5.8153 25 6 7.8388 1.8011 -5.4068 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8531 0.5879 0.8544 32 1 3.9788 2.1782 0.0650 33 1 4.8515 -3.2379 0.7451 34 1 3.5654 2.2114 -2.4317 35 1 4.0089 0.7377 -3.3260 36 1 5.0922 3.9601 -2.3164 37 1 6.8402 3.6159 -1.8394 38 1 8.4360 3.0097 -2.3147 39 1 10.7562 2.6154 -3.0389 40 1 11.2083 1.7076 -5.2827 41 1 9.3398 1.1862 -6.7992 42 1 7.0192 1.5720 -6.0718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453603079.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = 34.482248 kcal Electronic energy + Delta-G solvation = -21232.717170 eV Core-core repulsion = 18179.738664 eV Total energy + Delta-G solvation = -3052.978506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.46878 -37.58072 -36.82032 -34.94896 -31.52964 -30.82913 -30.53042 -29.05574 -26.27614 -25.66445 -23.62532 -22.93155 -22.29973 -21.38790 -20.16112 -19.48452 -17.01195 -16.68313 -15.93720 -15.44916 -15.26496 -14.82295 -14.68163 -14.39145 -14.07871 -13.72301 -13.38657 -13.19772 -12.88934 -12.70300 -12.43159 -12.12233 -11.77304 -11.56259 -11.28271 -11.21602 -10.93066 -10.81118 -10.73167 -10.62016 -10.47309 -10.07378 -9.68973 -9.48752 -9.38857 -8.88839 -8.79696 -8.39437 -8.29214 -6.77967 -5.82221 -3.23497 1.48021 1.52838 3.38516 3.53001 3.56156 3.80765 4.38869 4.56576 4.64366 4.78288 4.99870 5.02144 5.09181 5.22669 5.28309 5.40137 5.45360 5.60363 5.64827 5.72306 5.76492 5.77958 5.92922 5.96891 6.02470 6.07414 6.11268 6.16115 6.18837 6.20421 6.30666 6.32019 6.50879 6.59007 6.62220 6.62630 6.76338 6.83246 6.98190 7.13804 7.97216 8.19883 8.52086 9.08685 9.85796 10.21616 11.34229 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.004912 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.371803 B = 5699.408715 C = 6264.618373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.349 6.349 3 C 0.046 3.954 4 C 0.134 3.866 5 N -0.593 5.593 6 C -0.248 4.248 7 H 0.077 0.923 8 C 0.039 3.961 9 N -0.903 5.903 10 Si 0.875 3.125 11 H -0.288 1.288 12 H -0.305 1.305 13 H -0.269 1.269 14 C 0.179 3.821 15 C -0.132 4.132 16 H 0.108 0.892 17 C -0.181 4.181 18 C -0.130 4.130 19 H 0.108 0.892 20 C -0.035 4.035 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.135 4.135 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.078 0.922 27 H 0.026 0.974 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 12.888 -6.510 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.033 4.033 4 C 0.008 3.992 5 N -0.314 5.314 6 C -0.376 4.376 7 H 0.095 0.905 8 C -0.161 4.161 9 N -0.545 5.545 10 Si 0.707 3.293 11 H -0.217 1.217 12 H -0.234 1.234 13 H -0.193 1.193 14 C 0.052 3.948 15 C -0.153 4.153 16 H 0.126 0.874 17 C -0.218 4.218 18 C -0.149 4.149 19 H 0.126 0.874 20 C -0.035 4.035 21 C -0.141 4.141 22 C -0.136 4.136 23 C -0.153 4.153 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.097 0.903 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.363 12.542 -6.421 14.485 hybrid contribution 0.398 0.692 0.911 1.211 sum 3.761 13.233 -5.510 14.820 Atomic orbital electron populations 1.22648 0.83798 1.01884 0.98288 1.88293 1.16921 1.26595 1.94797 1.23263 0.97493 0.85009 0.97550 1.21307 0.90201 0.96402 0.91306 1.44009 1.76206 1.04425 1.06779 1.18651 1.36342 0.80220 1.02416 0.90507 1.25338 0.98031 0.94865 0.97839 1.69841 1.46356 1.08626 1.29645 0.86972 0.80118 0.80141 0.82087 1.21683 1.23392 1.19347 1.20545 0.89418 0.93803 0.91026 1.23714 1.01708 0.92920 0.96979 0.87354 1.23152 1.02753 0.96406 0.99478 1.21144 0.93670 1.07721 0.92384 0.87359 1.19264 0.93690 0.96823 0.93700 1.21090 0.92381 1.00833 0.99823 1.21089 0.96570 0.99652 0.96315 1.21065 0.98823 1.00844 0.94551 1.21089 0.92805 1.00202 0.99592 1.20967 0.96734 0.99764 0.96023 0.90311 0.95569 0.95228 0.95370 0.94577 0.91982 0.92792 0.93052 0.94115 0.92321 0.88980 0.89402 0.86100 0.86430 0.86532 0.86332 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.79 10.27 -35.23 -0.36 -8.16 16 3 C 0.05 0.90 6.29 37.16 0.23 1.13 16 4 C 0.13 2.90 4.79 -4.04 -0.02 2.88 16 5 N -0.59 -13.85 2.07 -173.24 -0.36 -14.21 16 6 C -0.25 -6.95 9.57 -15.06 -0.14 -7.09 16 7 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 8 C 0.04 1.14 5.34 -17.43 -0.09 1.05 16 9 N -0.90 -28.30 13.97 55.49 0.78 -27.53 16 10 Si 0.88 22.69 24.83 -169.99 -4.22 18.46 16 11 H -0.29 -7.36 6.69 56.52 0.38 -6.98 16 12 H -0.31 -8.11 7.11 56.52 0.40 -7.71 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.18 3.43 5.96 -4.04 -0.02 3.41 16 15 C -0.13 -2.36 5.65 -90.61 -0.51 -2.87 16 16 H 0.11 2.31 8.14 -51.93 -0.42 1.89 16 17 C -0.18 -2.63 9.50 -26.73 -0.25 -2.89 16 18 C -0.13 -1.93 5.76 -91.77 -0.53 -2.46 16 19 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 20 C -0.03 -0.52 5.61 -104.62 -0.59 -1.10 16 21 C -0.12 -1.78 9.30 -39.59 -0.37 -2.15 16 22 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 23 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 24 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 25 C -0.12 -1.60 9.74 -39.58 -0.39 -1.98 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.06 1.52 3.10 -51.93 -0.16 1.36 16 32 H 0.05 1.02 8.10 -51.92 -0.42 0.60 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.04 0.69 7.80 -51.93 -0.41 0.28 16 35 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 36 H 0.09 1.20 8.03 -51.93 -0.42 0.79 16 37 H 0.09 1.23 6.17 -51.93 -0.32 0.90 16 38 H 0.12 1.67 6.02 -52.48 -0.32 1.35 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -32.29 343.55 -8.44 -40.73 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.69 Total: 1.80 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.76 Total: -16.28 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.42 Total: -41.74 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.36 Total: -8.16 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.22 Total: 18.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.29 -8.44 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453603079.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.213 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds