Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00501 * 2 1 4 4 C 1.53002 * 109.47339 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47035 * 63.66194 * 4 3 2 6 6 C 1.36933 * 120.00304 * 266.92072 * 5 4 3 7 7 H 1.07993 * 120.00442 * 143.38769 * 6 5 4 8 8 C 1.38825 * 119.99650 * 323.39205 * 6 5 4 9 9 N 1.31615 * 119.99680 * 160.00494 * 8 6 5 10 10 Si 1.86794 * 119.99805 * 340.00238 * 8 6 5 11 11 H 1.48498 * 109.47016 * 95.26330 * 10 8 6 12 12 H 1.48499 * 109.47009 * 215.25933 * 10 8 6 13 13 H 1.48500 * 109.47452 * 335.26341 * 10 8 6 14 14 C 1.46503 * 119.99798 * 86.92130 * 5 4 3 15 15 C 1.53004 * 109.46941 * 90.00133 * 14 5 4 16 16 H 1.08994 * 115.55233 * 29.27569 * 15 14 5 17 17 C 1.53001 * 117.49840 * 243.60405 * 15 14 5 18 18 C 1.52998 * 60.00299 * 252.48740 * 17 15 14 19 19 H 1.09002 * 117.49857 * 107.48802 * 18 17 15 20 20 C 1.50699 * 117.50005 * 252.50971 * 18 17 15 21 21 C 1.38237 * 119.99809 * 8.33340 * 20 18 17 22 22 C 1.38228 * 119.99984 * 179.78813 * 21 20 18 23 23 C 1.38240 * 120.00046 * 0.44258 * 22 21 20 24 24 C 1.38242 * 119.99851 * 359.80979 * 23 22 21 25 25 C 1.38234 * 119.99900 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.46920 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46623 * 300.00221 * 1 2 3 28 28 H 1.08994 * 109.46760 * 59.99826 * 1 2 3 29 29 H 1.09006 * 109.47044 * 59.99940 * 3 2 1 30 30 H 1.09007 * 109.46854 * 300.00143 * 3 2 1 31 31 H 1.08992 * 109.47168 * 303.65763 * 4 3 2 32 32 H 1.09008 * 109.46914 * 183.66246 * 4 3 2 33 33 H 0.97006 * 119.99737 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47312 * 329.99927 * 14 5 4 35 35 H 1.09000 * 109.46993 * 209.99704 * 14 5 4 36 36 H 1.09002 * 117.49838 * 359.97438 * 17 15 14 37 37 H 1.08999 * 117.50106 * 144.99652 * 17 15 14 38 38 H 1.08005 * 119.99924 * 359.97438 * 21 20 18 39 39 H 1.07997 * 120.00633 * 180.27508 * 22 21 20 40 40 H 1.07997 * 120.00443 * 179.83444 * 23 22 21 41 41 H 1.07992 * 119.99957 * 180.02562 * 24 23 22 42 42 H 1.07996 * 120.00359 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9734 0.5352 -1.2387 6 6 4.1550 -0.8216 -1.2732 7 1 3.8961 -1.3787 -2.1614 8 6 4.6720 -1.4809 -0.1664 9 7 4.4899 -2.7771 -0.0282 10 14 5.6260 -0.5286 1.1267 11 1 4.7125 -0.1439 2.2324 12 1 6.7195 -1.3792 1.6614 13 1 6.2045 0.6944 0.5144 14 6 4.2170 1.3376 -2.4401 15 6 5.6781 1.7911 -2.4628 16 1 6.3851 1.1239 -1.9700 17 6 5.9525 3.2942 -2.3841 18 6 6.1648 2.5459 -3.7016 19 1 5.4440 2.7194 -4.5007 20 6 7.5850 2.3100 -4.1469 21 6 8.6341 2.6076 -3.2974 22 6 9.9367 2.3871 -3.7041 23 6 10.1906 1.8775 -4.9638 24 6 9.1416 1.5847 -5.8153 25 6 7.8388 1.8011 -5.4068 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8531 0.5879 0.8544 32 1 3.9788 2.1782 0.0650 33 1 4.8515 -3.2379 0.7451 34 1 3.5654 2.2114 -2.4317 35 1 4.0089 0.7377 -3.3260 36 1 5.0922 3.9601 -2.3164 37 1 6.8402 3.6159 -1.8394 38 1 8.4360 3.0097 -2.3147 39 1 10.7562 2.6154 -3.0389 40 1 11.2083 1.7076 -5.2827 41 1 9.3398 1.1862 -6.7992 42 1 7.0192 1.5720 -6.0718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453603079.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = 15.771252 kcal Electronic energy + Delta-G solvation = -21233.528540 eV Core-core repulsion = 18179.738664 eV Total energy + Delta-G solvation = -3053.789876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54872 -39.09802 -38.14782 -36.60829 -33.63644 -31.84530 -31.67214 -30.57767 -27.99373 -27.12990 -24.70635 -24.68249 -23.38800 -22.91890 -21.40637 -20.87283 -18.74126 -18.05419 -17.58472 -17.08632 -16.49656 -16.26104 -15.93361 -15.74546 -15.51930 -15.02581 -14.97148 -14.66811 -14.19985 -14.17945 -13.80284 -13.67830 -13.17149 -12.99437 -12.94675 -12.49103 -12.41763 -12.29992 -12.20876 -12.01970 -11.81733 -11.67623 -11.40742 -11.26769 -10.73638 -10.58078 -10.34614 -9.79825 -9.39217 -8.70099 -8.07386 -5.43547 0.45616 0.52526 1.30369 1.40778 1.51091 2.48760 2.73213 3.12673 3.15908 3.22207 3.42416 3.80185 3.99087 4.09557 4.16384 4.22389 4.28766 4.30919 4.38444 4.43111 4.55541 4.61821 4.62435 4.63379 4.64871 4.72294 4.76853 4.88230 4.93342 5.00254 5.03064 5.12474 5.17140 5.20987 5.27294 5.48638 5.62438 5.63936 5.78896 6.03675 6.15910 6.25867 6.59050 7.09172 7.74506 8.13065 9.13709 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.004912 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.371803 B = 5699.408715 C = 6264.618373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.047 3.953 4 C 0.125 3.875 5 N -0.604 5.604 6 C -0.223 4.223 7 H 0.033 0.967 8 C -0.023 4.023 9 N -0.957 5.957 10 Si 0.942 3.058 11 H -0.281 1.281 12 H -0.319 1.319 13 H -0.251 1.251 14 C 0.182 3.818 15 C -0.158 4.158 16 H 0.067 0.933 17 C -0.158 4.158 18 C -0.115 4.115 19 H 0.124 0.876 20 C -0.061 4.061 21 C -0.141 4.141 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.124 4.124 25 C -0.131 4.131 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.088 0.912 33 H 0.256 0.744 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.595 16.130 -6.933 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.031 4.031 4 C 0.000 4.000 5 N -0.326 5.326 6 C -0.353 4.353 7 H 0.051 0.949 8 C -0.217 4.217 9 N -0.603 5.603 10 Si 0.772 3.228 11 H -0.209 1.209 12 H -0.249 1.249 13 H -0.174 1.174 14 C 0.057 3.943 15 C -0.179 4.179 16 H 0.086 0.914 17 C -0.195 4.195 18 C -0.134 4.134 19 H 0.142 0.858 20 C -0.061 4.061 21 C -0.159 4.159 22 C -0.146 4.146 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.149 4.149 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.718 15.853 -6.862 17.670 hybrid contribution 0.251 -0.296 0.895 0.976 sum 3.969 15.556 -5.967 17.127 Atomic orbital electron populations 1.22803 0.81255 1.02485 1.00289 1.88210 1.19964 1.28699 1.95260 1.23248 0.95608 0.84416 0.99864 1.21451 0.92289 0.97143 0.89072 1.44066 1.76856 1.03034 1.08669 1.18443 1.33956 0.82547 1.00378 0.94944 1.25930 0.99648 0.95575 1.00586 1.69992 1.48828 1.10607 1.30884 0.85892 0.78163 0.78991 0.79712 1.20911 1.24893 1.17442 1.20582 0.91134 0.94043 0.88584 1.23208 0.99605 0.94675 1.00393 0.91443 1.23259 1.03713 0.93864 0.98638 1.21196 0.94082 1.05752 0.92341 0.85838 1.19437 0.93824 0.98246 0.94575 1.21263 0.93149 1.01524 0.99955 1.21416 0.96640 0.99381 0.97147 1.21461 1.00211 0.99646 0.94120 1.21454 0.92370 0.99598 1.00797 1.21232 0.97904 0.99804 0.95986 0.90614 0.93068 0.93509 0.92328 0.92682 0.94898 0.89371 0.93538 0.90788 0.93970 0.86549 0.88806 0.86076 0.84457 0.83843 0.83883 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.40 -17.66 10.27 -148.98 -1.53 -19.19 16 3 C 0.05 1.71 6.29 71.98 0.45 2.16 16 4 C 0.13 5.17 4.79 86.38 0.41 5.59 16 5 N -0.60 -28.00 2.07 -702.00 -1.45 -29.45 16 6 C -0.22 -12.96 9.57 84.04 0.80 -12.16 16 7 H 0.03 2.14 8.06 -2.91 -0.02 2.11 16 8 C -0.02 -1.38 5.34 84.87 0.45 -0.93 16 9 N -0.96 -62.94 13.97 21.66 0.30 -62.64 16 10 Si 0.94 48.37 24.83 68.60 1.70 50.08 16 11 H -0.28 -13.93 6.69 99.48 0.67 -13.27 16 12 H -0.32 -16.89 7.11 99.48 0.71 -16.18 16 13 H -0.25 -11.92 7.11 99.48 0.71 -11.22 16 14 C 0.18 6.78 5.96 86.38 0.52 7.29 16 15 C -0.16 -5.47 5.65 -10.79 -0.06 -5.53 16 16 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 17 C -0.16 -4.12 9.50 30.59 0.29 -3.83 16 18 C -0.12 -3.20 5.76 -11.54 -0.07 -3.27 16 19 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 20 C -0.06 -1.74 5.61 -19.87 -0.11 -1.85 16 21 C -0.14 -3.90 9.30 22.27 0.21 -3.69 16 22 C -0.13 -3.08 10.05 22.27 0.22 -2.85 16 23 C -0.14 -3.00 10.05 22.27 0.22 -2.77 16 24 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 25 C -0.13 -3.42 9.74 22.27 0.22 -3.20 16 26 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.03 1.57 3.10 -2.39 -0.01 1.56 16 32 H 0.09 2.99 8.10 -2.38 -0.02 2.97 16 33 H 0.26 16.09 8.31 -92.70 -0.77 15.32 16 34 H 0.07 2.25 7.80 -2.39 -0.02 2.23 16 35 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 36 H 0.12 2.49 8.03 -2.39 -0.02 2.47 16 37 H 0.09 2.35 6.17 -2.39 -0.01 2.34 16 38 H 0.12 3.21 6.02 -2.91 -0.02 3.19 16 39 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 40 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 41 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -73.87 343.55 5.00 -68.88 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.94 Total: 17.83 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 5.03 Total: -25.50 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -1.15 Total: -92.09 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -1.53 Total: -19.19 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 1.70 Total: 50.08 kcal Total: -73.87 5.00 -68.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453603079.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.647 kcal (2) G-P(sol) polarization free energy of solvation -73.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds