Wall clock time and date at job start Mon Mar 30 2020 02:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46094 * 2 1 4 4 C 1.53037 * 109.46371 * 119.98175 * 2 1 3 5 5 C 1.53116 * 109.27773 * 60.82288 * 4 2 1 6 6 C 1.53115 * 109.16273 * 57.65788 * 5 4 2 7 7 H 1.08992 * 109.50686 * 62.28395 * 6 5 4 8 8 C 1.53007 * 109.53695 * 182.38457 * 6 5 4 9 9 N 1.46896 * 109.46616 * 294.82158 * 8 6 5 10 10 C 1.53036 * 109.27608 * 302.34164 * 6 5 4 11 11 N 1.46847 * 109.45726 * 240.02324 * 2 1 3 12 12 C 1.39080 * 110.99617 * 65.83837 * 11 2 1 13 13 C 1.38742 * 119.65704 * 91.80880 * 12 11 2 14 14 C 1.40773 * 118.67081 * 180.02562 * 13 12 11 15 15 C 1.41552 * 120.99792 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00224 * 197.59147 * 15 14 13 17 17 C 1.40029 * 119.99655 * 17.58553 * 15 14 13 18 18 N 1.30747 * 119.99715 * 18.25372 * 17 15 14 19 19 Si 1.86802 * 120.00008 * 198.24863 * 17 15 14 20 20 H 1.48495 * 109.46697 * 60.00382 * 19 17 15 21 21 H 1.48498 * 109.47189 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47381 * 300.00368 * 19 17 15 23 23 C 1.41191 * 118.01413 * 0.02562 * 14 13 12 24 24 C 1.36557 * 119.14332 * 0.02562 * 23 14 13 25 25 N 1.32094 * 121.26876 * 359.71746 * 24 23 14 26 26 H 1.09002 * 109.46576 * 301.71749 * 1 2 3 27 27 H 1.08998 * 109.47450 * 61.71397 * 1 2 3 28 28 H 1.09000 * 109.47276 * 181.72329 * 1 2 3 29 29 H 1.09001 * 109.50239 * 300.88252 * 4 2 1 30 30 H 1.08995 * 109.50381 * 180.76464 * 4 2 1 31 31 H 1.09003 * 109.52363 * 297.74986 * 5 4 2 32 32 H 1.09003 * 109.57462 * 177.59362 * 5 4 2 33 33 H 1.08998 * 109.46785 * 54.81956 * 8 6 5 34 34 H 1.08997 * 109.47128 * 174.82295 * 8 6 5 35 35 H 1.00905 * 110.99821 * 179.97438 * 9 8 6 36 36 H 1.00901 * 111.00107 * 303.94823 * 9 8 6 37 37 H 1.08997 * 109.46396 * 179.19504 * 10 6 5 38 38 H 1.09002 * 109.46269 * 299.17723 * 10 6 5 39 39 H 1.08007 * 120.66495 * 359.97438 * 13 12 11 40 40 H 0.97006 * 119.99230 * 179.97438 * 18 17 15 41 41 H 1.07994 * 120.42696 * 180.02562 * 23 14 13 42 42 H 1.08003 * 119.36517 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2498 5 6 1.5441 -2.1696 1.2354 6 6 2.0264 -2.8533 -0.0469 7 1 3.1161 -2.8754 -0.0598 8 6 1.4859 -4.2837 -0.0986 9 7 2.0699 -5.0677 0.9978 10 6 1.5169 -2.0705 -1.2592 11 7 2.0192 -0.6918 -1.1994 12 6 1.6841 0.0112 -2.3517 13 6 2.5724 0.9419 -2.8709 14 6 2.2119 1.6420 -4.0377 15 6 3.0804 2.6026 -4.6092 16 1 2.6974 3.3247 -5.3151 17 6 4.4361 2.6167 -4.2591 18 7 4.9793 1.5641 -3.7057 19 14 5.4685 4.1395 -4.5828 20 1 4.8951 5.2926 -3.8435 21 1 6.8607 3.9002 -4.1249 22 1 5.4706 4.4360 -6.0379 23 6 0.9575 1.3582 -4.6204 24 6 0.1488 0.4255 -4.0367 25 7 0.5207 -0.2170 -2.9441 26 1 -0.3632 0.5403 0.8742 27 1 -0.3634 0.4870 -0.9049 28 1 -0.3634 -1.0272 0.0309 29 1 1.6640 -0.2165 2.1399 30 1 3.1298 -0.7096 1.2574 31 1 0.4546 -2.1820 1.2672 32 1 1.9397 -2.6997 2.1018 33 1 0.4010 -4.2661 0.0051 34 1 1.7524 -4.7386 -1.0526 35 1 1.7280 -6.0169 0.9857 36 1 3.0780 -5.0457 0.9610 37 1 1.8705 -2.5465 -2.1737 38 1 0.4269 -2.0604 -1.2530 39 1 3.5213 1.1261 -2.3890 40 1 5.9186 1.5738 -3.4636 41 1 0.6418 1.8721 -5.5162 42 1 -0.8113 0.2053 -4.4797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164468310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:45 Heat of formation + Delta-G solvation = 25.771670 kcal Electronic energy + Delta-G solvation = -21986.748662 eV Core-core repulsion = 18965.685188 eV Total energy + Delta-G solvation = -3021.063474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.84217 -37.78615 -35.27385 -34.10734 -32.48052 -30.96634 -30.43524 -28.54762 -27.05280 -25.97301 -24.03299 -23.43527 -21.77224 -21.06828 -20.18929 -18.47052 -17.39529 -16.03920 -15.49049 -15.38362 -14.93595 -14.64840 -14.53110 -14.29964 -14.11715 -13.55736 -13.07812 -12.74373 -12.59811 -12.50443 -12.33213 -11.92665 -11.77421 -11.51886 -11.37795 -11.16451 -11.06867 -10.84801 -10.59328 -10.30270 -10.17504 -10.07766 -10.00448 -9.67731 -9.39096 -8.69321 -8.38625 -7.98250 -7.85072 -7.10625 -6.81514 -4.58351 2.71380 2.87025 3.01668 3.03740 3.26028 3.84354 4.37736 4.57451 4.71084 5.03841 5.17030 5.25214 5.48279 5.57705 5.63855 5.70472 5.81034 5.86651 5.90441 5.95044 6.07995 6.13764 6.16915 6.29132 6.34649 6.43369 6.55824 6.56252 6.65152 6.74010 6.86363 6.92591 6.95249 7.07919 7.21671 7.30317 7.38212 7.57738 7.67884 7.78478 7.99145 8.26916 8.66230 8.76374 8.83180 9.62603 10.04690 Molecular weight = 275.17amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.005054 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.806200 B = 5538.301839 C = 5946.187699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.088 3.912 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.103 4.103 6 C -0.084 4.084 7 H 0.072 0.928 8 C 0.067 3.933 9 N -0.849 5.849 10 C 0.074 3.926 11 N -0.469 5.469 12 C 0.275 3.725 13 C -0.196 4.196 14 C 0.126 3.874 15 C -0.450 4.450 16 H 0.081 0.919 17 C 0.076 3.924 18 N -0.773 5.773 19 Si 0.911 3.089 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.282 4.282 24 C 0.110 3.890 25 N -0.601 5.601 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.337 0.663 36 H 0.339 0.661 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.140 0.860 40 H 0.284 0.716 41 H 0.097 0.903 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.331 -6.181 7.487 9.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.020 4.020 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.140 4.140 6 C -0.103 4.103 7 H 0.090 0.910 8 C -0.064 4.064 9 N -0.378 5.378 10 C -0.055 4.055 11 N -0.190 5.190 12 C 0.053 3.947 13 C -0.220 4.220 14 C 0.117 3.883 15 C -0.481 4.481 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.398 5.398 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.189 1.189 23 C -0.305 4.305 24 C -0.045 4.045 25 N -0.320 5.320 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.157 0.843 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.512 -6.418 8.468 10.918 hybrid contribution 0.643 0.697 -1.551 1.818 sum -1.869 -5.721 6.917 9.169 Atomic orbital electron populations 1.22453 0.97277 1.02005 1.01912 1.21629 0.93070 0.97802 0.89489 0.90515 1.21617 1.01199 0.95737 0.96361 1.21500 1.00277 0.94831 0.97404 1.21214 1.00699 0.92912 0.95484 0.90956 1.21782 0.99473 0.93689 0.91431 1.58709 1.12477 1.17338 1.49274 1.21808 0.98681 0.88362 0.96614 1.60064 1.57032 1.01496 1.00387 1.19364 0.89621 0.94287 0.91422 1.22006 1.01333 1.00800 0.97859 1.17768 0.90829 0.89980 0.89706 1.19606 0.92479 1.13406 1.22599 0.90131 1.26012 0.98715 0.96814 0.92881 1.69783 1.13830 1.27270 1.28914 0.86313 0.78351 0.81890 0.79925 1.18668 1.20124 1.18872 1.21532 0.99292 1.06075 1.03637 1.21305 0.97549 0.93458 0.92173 1.67302 1.18508 1.32331 1.13892 0.93578 0.91313 0.92348 0.92055 0.91455 0.92476 0.91434 0.91241 0.95601 0.85161 0.84869 0.91865 0.93084 0.84269 0.90453 0.88459 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.10 37.16 0.30 -2.78 16 2 C 0.09 1.58 2.90 -67.72 -0.20 1.39 16 3 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 4 C -0.11 -1.65 5.61 -26.65 -0.15 -1.80 16 5 C -0.10 -1.42 4.84 -26.61 -0.13 -1.55 16 6 C -0.08 -1.22 2.49 -90.54 -0.23 -1.45 16 7 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 8 C 0.07 0.83 6.18 -3.82 -0.02 0.81 16 9 N -0.85 -8.79 9.14 -10.37 -0.09 -8.88 16 10 C 0.07 1.34 3.90 -3.83 -0.01 1.33 16 11 N -0.47 -9.64 4.58 -165.74 -0.76 -10.40 16 12 C 0.28 6.59 4.99 -154.98 -0.77 5.82 16 13 C -0.20 -5.14 8.78 -38.44 -0.34 -5.48 16 14 C 0.13 3.34 5.67 -106.56 -0.60 2.73 16 15 C -0.45 -11.71 9.13 -37.65 -0.34 -12.05 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 17 C 0.08 1.87 5.23 -17.34 -0.09 1.78 16 18 N -0.77 -19.56 10.62 55.55 0.59 -18.97 16 19 Si 0.91 18.12 29.60 -169.99 -5.03 13.08 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 23 C -0.28 -6.89 9.85 -39.07 -0.38 -7.27 16 24 C 0.11 2.54 11.10 -18.05 -0.20 2.34 16 25 N -0.60 -14.15 7.73 -12.82 -0.10 -14.25 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.39 6.41 -51.93 -0.33 1.05 16 28 H 0.06 0.98 4.80 -51.93 -0.25 0.73 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.80 6.52 -51.93 -0.34 0.46 16 32 H 0.07 0.89 7.83 -51.93 -0.41 0.48 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.34 2.83 9.08 -39.29 -0.36 2.48 16 36 H 0.34 3.25 8.99 -39.29 -0.35 2.90 16 37 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.05 0.96 5.88 -51.93 -0.31 0.66 16 39 H 0.14 3.81 5.80 -52.48 -0.30 3.51 16 40 H 0.28 6.54 8.29 -40.82 -0.34 6.20 16 41 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 42 H 0.11 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -27.23 324.45 -10.10 -37.33 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -6.42 Total: 13.38 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.17 Total: -16.19 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.36 Total: -52.50 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.23 -10.10 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164468310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.102 kcal (2) G-P(sol) polarization free energy of solvation -27.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds