Wall clock time and date at job start Mon Mar 30 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.46906 * 55.00224 * 6 5 4 8 8 N 1.46898 * 109.47092 * 295.00148 * 6 5 4 9 9 C 1.46905 * 110.99865 * 155.00007 * 8 6 5 10 10 C 1.52998 * 109.46951 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.47215 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99951 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00559 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99381 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00498 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46859 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47166 * 120.00221 * 15 13 11 18 18 H 1.48501 * 109.46833 * 240.00147 * 15 13 11 19 19 C 1.50699 * 109.47482 * 174.99860 * 6 5 4 20 20 C 1.38236 * 119.99912 * 79.72929 * 19 6 5 21 21 C 1.38233 * 120.00045 * 179.78941 * 20 19 6 22 22 C 1.38233 * 119.99944 * 0.44003 * 21 20 19 23 23 C 1.38233 * 120.00018 * 359.81457 * 22 21 20 24 24 C 1.38232 * 120.00107 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 27 27 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 28 28 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 29 29 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 30 30 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 31 31 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 33 33 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 36 36 H 1.00895 * 111.00265 * 278.94995 * 8 6 5 37 37 H 1.09003 * 109.46905 * 299.99465 * 9 8 6 38 38 H 1.08999 * 109.47700 * 60.00069 * 9 8 6 39 39 H 1.09001 * 109.47379 * 299.99921 * 10 9 8 40 40 H 1.09003 * 109.47381 * 60.00107 * 10 9 8 41 41 H 0.96999 * 119.99702 * 179.97438 * 14 13 11 42 42 H 1.08006 * 119.99710 * 359.97438 * 20 19 6 43 43 H 1.08005 * 119.99852 * 180.27043 * 21 20 19 44 44 H 1.08007 * 119.99899 * 179.83549 * 22 21 20 45 45 H 1.08003 * 120.00170 * 180.02562 * 23 22 21 46 46 H 1.07994 * 120.00242 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6098 2.8851 -0.0013 7 1 5.9725 2.2963 -0.8439 8 7 6.1006 2.2989 1.2531 9 6 7.4479 1.7391 1.0808 10 6 7.9237 1.1386 2.4052 11 6 9.3055 0.5638 2.2284 12 1 9.7955 0.6215 1.2677 13 6 9.9447 -0.0347 3.2934 14 7 9.3482 -0.1045 4.4634 15 14 11.6578 -0.7466 3.0745 16 1 12.1034 -0.5419 1.6728 17 1 12.5991 -0.0643 3.9983 18 1 11.6324 -2.2000 3.3781 19 6 6.1121 4.3006 -0.1245 20 6 6.1421 5.1225 0.9866 21 6 6.6069 6.4195 0.8745 22 6 7.0330 6.8976 -0.3506 23 6 6.9980 6.0774 -1.4627 24 6 6.5374 4.7790 -1.3498 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9337 0.9285 0.8891 33 1 3.9329 0.9289 -0.8909 34 1 3.7162 3.3994 -0.8895 35 1 3.7170 3.3984 0.8904 36 1 6.0836 2.9768 2.0001 37 1 7.4233 0.9613 0.3176 38 1 8.1329 2.5290 0.7727 39 1 7.9481 1.9161 3.1688 40 1 7.2386 0.3486 2.7129 41 1 9.7977 -0.5260 5.2126 42 1 5.8053 4.7503 1.9428 43 1 6.6344 7.0603 1.7435 44 1 7.3936 7.9118 -0.4387 45 1 7.3314 6.4507 -2.4198 46 1 6.5104 4.1380 -2.2185 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181750585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:16 Heat of formation + Delta-G solvation = -30.429796 kcal Electronic energy + Delta-G solvation = -20850.703373 eV Core-core repulsion = 17930.743164 eV Total energy + Delta-G solvation = -2919.960209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62327 -38.04582 -36.64708 -35.30663 -33.53506 -31.98109 -31.81254 -30.38379 -28.27196 -26.03298 -24.76082 -23.57611 -22.63718 -22.26041 -21.72276 -21.09361 -18.52190 -18.06447 -16.78085 -16.59117 -16.37980 -16.07727 -15.71926 -15.25881 -15.13831 -14.70213 -14.53919 -14.25863 -14.19870 -13.94915 -13.89119 -13.46543 -13.15615 -12.99321 -12.85222 -12.60910 -12.41754 -12.35705 -12.17573 -11.97388 -11.83631 -11.72406 -11.59607 -11.38752 -11.30176 -11.27584 -11.17237 -10.57523 -9.82478 -9.60576 -9.27180 -8.20927 -6.32120 0.45135 0.50003 1.39117 1.39555 1.52907 2.39784 2.88254 3.12517 3.37004 3.66175 3.96358 4.06643 4.11846 4.16252 4.24612 4.28625 4.31496 4.46525 4.53258 4.57416 4.60993 4.65060 4.72062 4.78818 4.89823 4.93259 5.00482 5.06835 5.09437 5.12549 5.15055 5.20069 5.27354 5.31221 5.42977 5.45993 5.55709 5.57555 5.60150 5.62570 5.67683 5.69746 5.81160 6.12289 6.16028 6.30185 6.53350 6.84839 7.37016 8.91407 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.009268 B = 0.004865 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.569788 B = 5754.099797 C = 8225.090441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.112 4.112 4 C -0.110 4.110 5 C -0.087 4.087 6 C 0.125 3.875 7 H 0.077 0.923 8 N -0.679 5.679 9 C 0.090 3.910 10 C 0.034 3.966 11 C -0.543 4.543 12 H 0.057 0.943 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.965 3.035 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.276 1.276 19 C -0.116 4.116 20 C -0.134 4.134 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.123 4.123 24 C -0.127 4.127 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.336 0.664 37 H 0.056 0.944 38 H 0.009 0.991 39 H -0.012 1.012 40 H -0.004 1.004 41 H 0.264 0.736 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 10.600 -12.496 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.150 4.150 4 C -0.147 4.147 5 C -0.125 4.125 6 C 0.015 3.985 7 H 0.095 0.905 8 N -0.309 5.309 9 C -0.039 4.039 10 C -0.003 4.003 11 C -0.582 4.582 12 H 0.075 0.925 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.118 4.118 20 C -0.152 4.152 21 C -0.144 4.144 22 C -0.149 4.149 23 C -0.141 4.141 24 C -0.146 4.146 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.156 0.844 37 H 0.074 0.926 38 H 0.028 0.972 39 H 0.007 0.993 40 H 0.014 0.986 41 H 0.073 0.927 42 H 0.135 0.865 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.162 0.838 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.203 9.913 -12.419 20.660 hybrid contribution 1.527 0.248 0.465 1.615 sum -11.676 10.161 -11.954 19.557 Atomic orbital electron populations 1.21759 0.95067 1.01849 1.01999 1.21548 0.96484 0.96955 1.01589 1.21568 0.94754 0.96727 1.01938 1.21451 0.95299 0.96278 1.01692 1.21448 0.91874 0.97311 1.01900 1.20698 0.96165 0.88933 0.92688 0.90465 1.60772 1.24741 1.38834 1.06591 1.21719 0.87436 0.96447 0.98308 1.18894 0.94580 0.94447 0.92399 1.21617 1.02170 1.37695 0.96673 0.92457 1.25950 1.02447 0.96377 0.94804 1.70113 1.39728 1.45238 1.01996 0.85397 0.78962 0.78084 0.78592 1.18689 1.20280 1.20201 1.20826 0.99377 0.97238 0.94365 1.21102 1.00960 0.94792 0.98362 1.21395 0.98660 0.95557 0.98773 1.21469 0.99916 1.00927 0.92614 1.21462 0.99127 0.93725 0.99781 1.21287 0.99450 0.96722 0.97105 0.92498 0.92775 0.92152 0.92156 0.93139 0.92389 0.91387 0.92839 0.92757 0.90789 0.92305 0.84416 0.92560 0.97238 0.99328 0.98585 0.92746 0.86516 0.84623 0.83835 0.83812 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.91 71.98 0.71 -1.75 16 2 C -0.13 -2.57 5.93 30.59 0.18 -2.39 16 3 C -0.11 -2.31 5.21 30.59 0.16 -2.15 16 4 C -0.11 -2.73 5.10 30.59 0.16 -2.57 16 5 C -0.09 -2.13 4.87 30.59 0.15 -1.98 16 6 C 0.13 3.62 2.22 44.17 0.10 3.72 16 7 H 0.08 2.28 7.66 -2.39 -0.02 2.26 16 8 N -0.68 -24.45 5.69 -495.45 -2.82 -27.27 16 9 C 0.09 3.93 5.42 86.30 0.47 4.39 16 10 C 0.03 1.88 5.23 29.85 0.16 2.03 16 11 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 12 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 13 C 0.00 0.13 5.46 84.66 0.46 0.59 16 14 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 15 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 16 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 C -0.12 -3.22 4.71 -19.87 -0.09 -3.31 16 20 C -0.13 -3.69 9.11 22.27 0.20 -3.48 16 21 C -0.13 -3.02 10.05 22.27 0.22 -2.79 16 22 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 23 C -0.12 -2.64 10.05 22.27 0.22 -2.41 16 24 C -0.13 -3.12 9.67 22.27 0.22 -2.90 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.63 7.75 -2.39 -0.02 1.61 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.34 12.10 6.36 -89.70 -0.57 11.53 16 37 H 0.06 2.45 8.06 -2.39 -0.02 2.43 16 38 H 0.01 0.42 8.00 -2.39 -0.02 0.40 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.12 3.23 6.53 -2.91 -0.02 3.21 16 43 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 44 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 46 H 0.13 2.78 8.04 -2.91 -0.02 2.75 16 Total: -1.00 -65.34 372.26 3.60 -61.74 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.34 Total: 24.92 kcal Atomic # 6 Polarization: -52.89 SS G_CDS: 3.77 Total: -49.12 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -2.53 Total: -84.57 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.34 3.60 -61.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181750585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.311 kcal (2) G-P(sol) polarization free energy of solvation -65.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds