Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30486 * 1 3 3 Si 1.86800 * 120.00030 * 2 1 4 4 H 1.48494 * 109.47101 * 274.98604 * 3 2 1 5 5 H 1.48504 * 109.47069 * 34.98923 * 3 2 1 6 6 H 1.48504 * 109.47219 * 154.98938 * 3 2 1 7 7 C 1.40643 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99810 * 173.59260 * 7 2 1 9 9 C 1.39423 * 119.99896 * 353.59781 * 7 2 1 10 10 C 1.38946 * 125.23348 * 186.79894 * 9 7 2 11 11 C 1.35556 * 114.53520 * 180.02562 * 10 9 7 12 12 C 1.37778 * 114.89805 * 359.97438 * 11 10 9 13 13 C 1.46481 * 125.08269 * 180.02562 * 12 11 10 14 14 O 1.21788 * 120.00247 * 354.67249 * 13 12 11 15 15 C 1.47661 * 119.99546 * 174.66996 * 13 12 11 16 16 C 1.39748 * 120.17275 * 104.49168 * 15 13 12 17 17 C 1.37833 * 119.87293 * 179.69604 * 16 15 13 18 18 C 1.38496 * 120.21884 * 0.57682 * 17 16 15 19 19 C 1.38252 * 120.35572 * 359.72179 * 18 17 16 20 20 C 1.38269 * 120.12286 * 359.97438 * 19 18 17 21 21 F 1.35100 * 120.10972 * 180.02562 * 20 19 18 22 22 S 1.75801 * 109.82790 * 0.26648 * 12 11 10 23 23 H 0.96997 * 119.99653 * 0.02562 * 1 2 3 24 24 H 1.07999 * 122.73027 * 0.05369 * 10 9 7 25 25 H 1.08008 * 122.54812 * 180.02562 * 11 10 9 26 26 H 1.08005 * 120.06825 * 359.97438 * 16 15 13 27 27 H 1.07993 * 119.89186 * 180.27927 * 17 16 15 28 28 H 1.08001 * 119.82108 * 179.74077 * 18 17 16 29 29 H 1.07994 * 119.93590 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2389 1.6177 0.0000 4 1 2.3810 2.1072 -1.3947 5 1 1.4930 2.6199 0.8029 6 1 3.5852 1.4120 0.5919 7 6 2.0080 -1.2180 0.0005 8 1 3.0830 -1.2210 -0.1038 9 6 1.3174 -2.4216 0.1357 10 6 1.9062 -3.6713 0.2844 11 6 1.0278 -4.6976 0.3972 12 6 -0.2999 -4.3329 0.3466 13 6 -1.4314 -5.2578 0.4467 14 8 -1.2344 -6.4589 0.4886 15 6 -2.8110 -4.7337 0.4968 16 6 -3.6355 -4.8175 -0.6283 17 6 -4.9243 -4.3320 -0.5727 18 6 -5.4006 -3.7508 0.5906 19 6 -4.5909 -3.6574 1.7073 20 6 -3.2977 -4.1454 1.6695 21 9 -2.5068 -4.0545 2.7610 22 16 -0.4327 -2.5925 0.1370 23 1 -0.4849 0.8401 -0.0004 24 1 2.9765 -3.8134 0.3085 25 1 1.3446 -5.7230 0.5185 26 1 -3.2652 -5.2659 -1.5384 27 1 -5.5632 -4.4007 -1.4407 28 1 -6.4102 -3.3687 0.6258 29 1 -4.9691 -3.2025 2.6108 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000167346.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = -53.680234 kcal Electronic energy + Delta-G solvation = -17971.208544 eV Core-core repulsion = 14864.314741 eV Total energy + Delta-G solvation = -3106.893803 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.036 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.44660 -38.96218 -37.35791 -35.79105 -34.11111 -31.14681 -30.30385 -29.32779 -26.23718 -23.71070 -22.39528 -22.19673 -19.91626 -18.57800 -17.63944 -17.12469 -16.17894 -16.00494 -15.52785 -15.04328 -14.77771 -14.16310 -13.97275 -13.61639 -13.17521 -12.95864 -12.62795 -12.53358 -12.01407 -11.95929 -11.76678 -11.48879 -11.38613 -11.12281 -10.97602 -10.62338 -10.11201 -9.78637 -9.11805 -8.80727 -8.76281 -8.39701 -7.64667 -7.34873 -6.94331 -4.85270 1.31036 1.44205 1.94204 2.71334 2.75768 2.82991 3.34110 3.43730 3.47304 3.79982 3.97011 4.16593 4.53465 4.77885 4.87550 5.00136 5.11515 5.40721 5.55363 5.98047 6.22507 6.30069 6.41392 6.47349 6.51407 6.59658 6.81002 6.93912 7.09197 7.25731 7.49282 7.70890 7.85805 8.17676 8.22285 8.66514 9.44398 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.021253 B = 0.006265 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.126163 B = 4468.531329 C = 5201.541843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.046 3.954 3 Si 0.940 3.060 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.350 4.350 8 H 0.103 0.897 9 C 0.038 3.962 10 C -0.337 4.337 11 C 0.010 3.990 12 C -0.479 4.479 13 C 0.465 3.535 14 O -0.511 6.511 15 C -0.148 4.148 16 C -0.063 4.063 17 C -0.136 4.136 18 C -0.091 4.091 19 C -0.159 4.159 20 C 0.130 3.870 21 F -0.129 7.129 22 S 0.157 5.843 23 H 0.305 0.695 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.222 2.543 -0.587 7.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.179 4.179 3 Si 0.762 3.238 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.386 4.386 8 H 0.121 0.879 9 C -0.084 4.084 10 C -0.359 4.359 11 C -0.019 4.019 12 C -0.594 4.594 13 C 0.353 3.647 14 O -0.396 6.396 15 C -0.150 4.150 16 C -0.081 4.081 17 C -0.154 4.154 18 C -0.109 4.109 19 C -0.178 4.178 20 C 0.111 3.889 21 F -0.107 7.107 22 S 0.417 5.583 23 H 0.118 0.882 24 H 0.127 0.873 25 H 0.122 0.878 26 H 0.150 0.850 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.539 2.936 -0.634 9.052 hybrid contribution 1.672 -0.178 0.380 1.724 sum -6.867 2.757 -0.253 7.404 Atomic orbital electron populations 1.68776 1.08110 1.31740 1.28698 1.26491 0.95210 1.03286 0.92940 0.85714 0.80363 0.77953 0.79797 1.18639 1.19237 1.17724 1.19563 0.96400 0.88930 1.33701 0.87892 1.22227 0.96061 0.95833 0.94274 1.19834 0.98444 0.91742 1.25897 1.19865 0.91447 0.97865 0.92765 1.24187 0.95817 1.00907 1.38527 1.18923 0.85747 0.87589 0.72487 1.90547 1.87320 1.17409 1.44307 1.20836 0.98236 1.01878 0.94088 1.21020 0.92891 0.97300 0.96913 1.21061 0.95714 1.00193 0.98407 1.21008 0.99447 0.98213 0.92269 1.21031 0.92675 1.03433 1.00646 1.17676 0.89061 0.98889 0.83309 1.91532 1.73720 1.93856 1.51615 1.84352 1.03882 0.95734 1.74321 0.88203 0.87330 0.87773 0.85040 0.85306 0.85234 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -16.71 10.66 55.59 0.59 -16.12 15 2 C 0.05 1.00 5.50 -17.22 -0.09 0.91 15 3 Si 0.94 15.82 29.57 -169.99 -5.03 10.79 15 4 H -0.26 -4.32 7.11 56.52 0.40 -3.92 15 5 H -0.27 -4.41 7.11 56.52 0.40 -4.01 15 6 H -0.25 -4.24 7.11 56.52 0.40 -3.84 15 7 C -0.35 -8.23 9.28 -38.23 -0.35 -8.59 15 8 H 0.10 2.24 7.86 -52.49 -0.41 1.83 15 9 C 0.04 0.98 6.18 -38.88 -0.24 0.74 15 10 C -0.34 -8.40 10.15 -40.28 -0.41 -8.81 15 11 C 0.01 0.26 9.87 -40.71 -0.40 -0.14 15 12 C -0.48 -12.22 6.42 -36.43 -0.23 -12.45 15 13 C 0.46 11.35 6.19 -32.42 -0.20 11.15 15 14 O -0.51 -13.40 17.59 5.11 0.09 -13.31 15 15 C -0.15 -3.07 5.04 -104.85 -0.53 -3.60 15 16 C -0.06 -1.08 9.79 -39.17 -0.38 -1.46 15 17 C -0.14 -1.84 10.03 -39.63 -0.40 -2.24 15 18 C -0.09 -1.18 10.04 -39.48 -0.40 -1.58 15 19 C -0.16 -2.42 10.01 -39.56 -0.40 -2.81 15 20 C 0.13 2.53 7.29 -38.94 -0.28 2.25 15 21 F -0.13 -2.74 16.83 2.25 0.04 -2.70 15 22 S 0.16 3.92 19.68 -107.50 -2.12 1.80 15 23 H 0.30 6.00 8.29 -40.82 -0.34 5.66 15 24 H 0.11 2.50 8.06 -52.49 -0.42 2.07 15 25 H 0.10 2.52 8.04 -52.48 -0.42 2.10 15 26 H 0.13 2.09 8.06 -52.48 -0.42 1.67 15 27 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.13 1.20 8.06 -52.49 -0.42 0.78 15 29 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15 LS Contribution 285.94 15.07 4.31 4.31 Total: -1.00 -28.89 285.94 -8.52 -37.40 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -2.08 Total: 4.48 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -4.32 Total: -26.65 kcal Atomic # 7 Polarization: -16.71 SS G_CDS: 0.59 Total: -16.12 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 15.82 SS G_CDS: -5.03 Total: 10.79 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -2.12 Total: 1.80 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.89 -8.52 -37.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000167346.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.277 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds