Wall clock time and date at job start Mon Mar 30 2020 01:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.76192 * 102.99967 * 180.02562 * 11 10 9 13 13 C 1.38929 * 120.07997 * 359.72325 * 12 11 10 14 14 C 1.38204 * 119.92460 * 179.77185 * 13 12 11 15 15 Cl 1.73601 * 119.96829 * 180.27360 * 14 13 12 16 16 C 1.38428 * 120.07179 * 0.50708 * 14 13 12 17 17 C 1.38274 * 120.14977 * 359.74400 * 16 14 13 18 18 C 1.38186 * 120.08457 * 0.02562 * 17 16 14 19 19 Cl 1.73599 * 120.04160 * 179.97438 * 18 17 16 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.08006 * 120.03719 * 0.02562 * 13 12 11 26 26 H 1.07999 * 119.92406 * 179.72692 * 16 14 13 27 27 H 1.08003 * 119.95439 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 16 1.3384 -5.2331 0.0021 12 6 2.6270 -6.4347 0.0025 13 6 3.9561 -6.0303 -0.0035 14 6 4.9644 -6.9755 0.0016 15 17 6.6256 -6.4715 0.0012 16 6 4.6511 -8.3239 0.0021 17 6 3.3292 -8.7298 0.0028 18 6 2.3161 -7.7901 0.0025 19 17 0.6569 -8.3009 0.0028 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 4.2012 -4.9784 -0.0081 26 1 5.4409 -9.0605 0.0016 27 1 3.0884 -9.7826 0.0028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019847575.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:53 Heat of formation + Delta-G solvation = -8.215879 kcal Electronic energy + Delta-G solvation = -13868.262314 eV Core-core repulsion = 11189.243519 eV Total energy + Delta-G solvation = -2679.018795 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.984 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.33643 -36.84577 -36.25452 -33.84643 -31.66354 -30.91016 -30.46270 -25.47407 -23.32643 -22.93606 -21.14139 -18.02189 -16.73076 -16.34661 -15.95952 -15.17150 -14.59700 -14.34873 -14.09476 -13.72605 -13.71256 -12.55091 -12.48790 -12.22258 -11.97401 -11.65350 -11.18818 -11.08608 -11.04783 -10.97907 -10.70045 -10.42349 -9.87979 -9.78468 -9.76490 -9.21791 -8.82993 -8.49418 -7.23153 -6.13413 -4.18792 0.77652 0.94022 1.67141 1.85638 2.17594 2.87852 3.24074 3.26740 3.31669 3.33838 4.36086 4.51627 4.80260 5.04194 5.09818 5.22501 5.48425 5.63721 5.76215 5.86819 5.92476 5.96446 6.31341 6.53293 7.42773 7.49320 7.80779 8.16854 8.85267 9.45860 10.97295 Molecular weight = 275.98amu Principal moments of inertia in cm(-1) A = 0.018154 B = 0.004869 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.012279 B = 5749.757674 C = 7271.322847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.039 3.961 10 C -0.095 4.095 11 S -0.088 6.088 12 C -0.061 4.061 13 C -0.120 4.120 14 C -0.009 4.009 15 Cl -0.064 7.064 16 C -0.120 4.120 17 C -0.080 4.080 18 C -0.029 4.029 19 Cl -0.049 7.049 20 H 0.264 0.736 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.147 0.853 26 H 0.141 0.859 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -17.432 0.001 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.243 4.243 11 S 0.162 5.838 12 C -0.176 4.176 13 C -0.145 4.145 14 C -0.038 4.038 15 Cl -0.036 7.036 16 C -0.143 4.143 17 C -0.101 4.101 18 C -0.064 4.064 19 Cl -0.020 7.020 20 H 0.074 0.926 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.165 0.835 26 H 0.158 0.842 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.614 -17.328 0.001 18.547 hybrid contribution 1.866 1.083 0.000 2.157 sum 8.480 -16.245 0.001 18.325 Atomic orbital electron populations 1.69948 1.06092 1.27174 1.49566 1.25002 0.94910 0.99354 0.94849 0.86562 0.79533 0.82627 0.78756 1.20076 1.21112 1.20073 1.21006 0.93020 0.90000 1.52372 0.92328 1.18912 0.93262 0.89078 0.98780 1.24207 1.02703 0.93159 1.04221 1.86059 1.09938 0.98970 1.88826 1.21987 0.97652 0.96314 1.01633 1.21171 0.89905 1.00602 1.02854 1.20861 0.85527 0.94047 1.03362 1.98381 1.16869 1.91518 1.96783 1.20904 0.96474 0.93925 1.03012 1.20882 0.90691 0.99351 0.99130 1.20474 0.86636 0.92079 1.07193 1.98379 1.16537 1.90446 1.96646 0.92591 0.95291 0.95286 0.90266 0.90263 0.83532 0.84163 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.52 -14.18 9.11 -34.44 -0.31 -14.50 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.04 0.96 4.98 -27.88 -0.14 0.82 15 10 C -0.10 -1.88 4.27 37.16 0.16 -1.72 15 11 S -0.09 -1.58 20.83 -107.50 -2.24 -3.81 15 12 C -0.06 -0.93 6.11 -39.02 -0.24 -1.17 15 13 C -0.12 -1.71 9.14 -39.34 -0.36 -2.07 15 14 C -0.01 -0.11 6.32 -39.52 -0.25 -0.36 15 15 Cl -0.06 -0.74 28.95 -51.86 -1.50 -2.24 15 16 C -0.12 -1.25 9.83 -39.50 -0.39 -1.64 15 17 C -0.08 -0.86 9.82 -39.59 -0.39 -1.25 15 18 C -0.03 -0.40 6.34 -39.30 -0.25 -0.65 15 19 Cl -0.05 -0.65 27.83 -51.86 -1.44 -2.09 15 20 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 21 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 22 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 23 H 0.08 1.50 7.74 -51.92 -0.40 1.09 15 24 H 0.08 1.50 7.76 -51.92 -0.40 1.09 15 25 H 0.15 2.13 5.88 -52.48 -0.31 1.83 15 26 H 0.14 1.08 8.06 -52.49 -0.42 0.66 15 27 H 0.14 1.13 8.06 -52.48 -0.42 0.70 15 LS Contribution 282.96 15.07 4.26 4.26 Total: -1.00 -28.18 282.96 -9.81 -38.00 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -2.35 Total: -3.94 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -2.26 Total: -20.91 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.24 Total: -3.81 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -2.94 Total: -4.33 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.18 -9.81 -38.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019847575.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.783 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds