Wall clock time and date at job start Mon Mar 30 2020 01:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.76192 * 102.99967 * 180.02562 * 11 10 9 13 13 C 1.38929 * 120.07997 * 359.72325 * 12 11 10 14 14 C 1.38204 * 119.92460 * 179.77185 * 13 12 11 15 15 Cl 1.73601 * 119.96829 * 180.27360 * 14 13 12 16 16 C 1.38428 * 120.07179 * 0.50708 * 14 13 12 17 17 C 1.38274 * 120.14977 * 359.74400 * 16 14 13 18 18 C 1.38186 * 120.08457 * 0.02562 * 17 16 14 19 19 Cl 1.73599 * 120.04160 * 179.97438 * 18 17 16 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.08006 * 120.03719 * 0.02562 * 13 12 11 26 26 H 1.07999 * 119.92406 * 179.72692 * 16 14 13 27 27 H 1.08003 * 119.95439 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 16 1.3384 -5.2331 0.0021 12 6 2.6270 -6.4347 0.0025 13 6 3.9561 -6.0303 -0.0035 14 6 4.9644 -6.9755 0.0016 15 17 6.6256 -6.4715 0.0012 16 6 4.6511 -8.3239 0.0021 17 6 3.3292 -8.7298 0.0028 18 6 2.3161 -7.7901 0.0025 19 17 0.6569 -8.3009 0.0028 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 4.2012 -4.9784 -0.0081 26 1 5.4409 -9.0605 0.0016 27 1 3.0884 -9.7826 0.0028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019847575.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:53 Heat of formation + Delta-G solvation = -21.569509 kcal Electronic energy + Delta-G solvation = -13868.841371 eV Core-core repulsion = 11189.243519 eV Total energy + Delta-G solvation = -2679.597852 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.984 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.33051 -37.82339 -37.24235 -35.84702 -33.17557 -32.33486 -31.49903 -27.43093 -24.35053 -24.17130 -22.82190 -19.11550 -18.72236 -17.50297 -17.00103 -16.54755 -16.30989 -15.81163 -15.19694 -15.04256 -15.01682 -14.10852 -13.71017 -13.53172 -13.26858 -12.98117 -12.97642 -12.50235 -12.34851 -12.10668 -12.05671 -12.04352 -11.73639 -11.41465 -11.03116 -10.87148 -10.61119 -9.82501 -8.56634 -8.24926 -6.38257 -0.22658 -0.04670 0.37865 0.88549 1.07427 1.41058 1.43667 1.51414 1.52750 2.26550 2.39364 3.09003 3.55953 3.92256 4.05375 4.11971 4.12787 4.24641 4.54254 4.63237 4.76753 4.93616 5.01935 5.33598 5.40782 5.43104 5.70447 6.07683 6.75084 7.31407 8.86597 Molecular weight = 275.98amu Principal moments of inertia in cm(-1) A = 0.018154 B = 0.004869 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.012279 B = 5749.757674 C = 7271.322847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.045 3.955 10 C -0.080 4.080 11 S -0.115 6.115 12 C -0.077 4.077 13 C -0.130 4.130 14 C -0.016 4.016 15 Cl -0.056 7.056 16 C -0.101 4.101 17 C -0.069 4.069 18 C -0.037 4.037 19 Cl -0.051 7.051 20 H 0.266 0.734 21 H 0.002 0.998 22 H 0.002 0.998 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.177 0.823 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.334 -19.015 0.002 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.006 3.994 10 C -0.228 4.228 11 S 0.133 5.867 12 C -0.192 4.192 13 C -0.156 4.156 14 C -0.044 4.044 15 Cl -0.027 7.027 16 C -0.122 4.122 17 C -0.089 4.089 18 C -0.071 4.071 19 Cl -0.022 7.022 20 H 0.075 0.925 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.155 0.845 26 H 0.195 0.805 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.894 -18.933 0.002 20.918 hybrid contribution 1.236 1.394 0.000 1.863 sum 10.130 -17.539 0.002 20.254 Atomic orbital electron populations 1.70088 1.07888 1.28187 1.50746 1.25972 0.95754 1.03390 0.94314 0.85443 0.78226 0.77731 0.79334 1.18994 1.20882 1.18987 1.21479 0.93745 0.91170 1.51858 0.91358 1.18670 0.93576 0.91043 0.96096 1.23777 1.01334 0.92912 1.04758 1.85983 1.11415 0.98931 1.90410 1.21815 0.96887 0.96063 1.04447 1.21140 0.90120 1.00748 1.03542 1.20986 0.85567 0.94602 1.03269 1.98389 1.15938 1.91625 1.96717 1.21363 0.97304 0.93647 0.99912 1.21299 0.89933 1.00503 0.97167 1.20716 0.87312 0.91814 1.07220 1.98382 1.16930 1.90252 1.96665 0.92504 0.97998 0.97992 0.89679 0.89680 0.84529 0.80529 0.80362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.54 15 2 C 0.00 0.26 5.46 84.66 0.46 0.72 15 3 Si 0.97 43.20 29.54 68.60 2.03 45.23 15 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 15 7 C -0.54 -30.00 9.11 25.60 0.23 -29.76 15 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 15 9 C 0.04 2.33 4.98 29.85 0.15 2.48 15 10 C -0.08 -3.25 4.27 71.98 0.31 -2.94 15 11 S -0.12 -4.22 20.83 -56.49 -1.18 -5.40 15 12 C -0.08 -2.31 6.11 22.63 0.14 -2.17 15 13 C -0.13 -3.58 9.14 22.43 0.21 -3.38 15 14 C -0.02 -0.34 6.32 22.31 0.14 -0.20 15 15 Cl -0.06 -1.14 28.95 -2.72 -0.08 -1.22 15 16 C -0.10 -1.68 9.83 22.32 0.22 -1.46 15 17 C -0.07 -1.21 9.82 22.27 0.22 -1.00 15 18 C -0.04 -0.92 6.34 22.45 0.14 -0.78 15 19 Cl -0.05 -1.30 27.83 -2.72 -0.08 -1.37 15 20 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 21 H 0.00 0.09 8.14 -2.39 -0.02 0.07 15 22 H 0.00 0.10 8.14 -2.39 -0.02 0.08 15 23 H 0.08 3.29 7.74 -2.39 -0.02 3.27 15 24 H 0.08 3.29 7.76 -2.39 -0.02 3.27 15 25 H 0.14 3.96 5.88 -2.91 -0.02 3.94 15 26 H 0.18 1.72 8.06 -2.91 -0.02 1.70 15 27 H 0.18 1.90 8.06 -2.91 -0.02 1.88 15 Total: -1.00 -62.14 282.96 4.38 -57.75 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: 1.19 Total: -0.96 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 2.22 Total: -38.49 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.28 Total: -55.54 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -4.22 SS G_CDS: -1.18 Total: -5.40 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.15 Total: -2.59 kcal Total: -62.14 4.38 -57.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019847575.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.183 kcal (2) G-P(sol) polarization free energy of solvation -62.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds